Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT01237.complete Sequence
635 bp assembled on 2009-07-28
GenBank Submission: BT088964.1
> AT01237.complete
ACGAGCACTAGCACACGAATAGATTTTCCACAACGTTGAGCATATGCAAA
CATCTAAATTCTACGGTTCTACATTCGATTCCATTCGATTCGATTACGAT
TGCCCTCGTTTTTCAGTTTTCTTCGAGATCCGTTTCTATGGCTAAAATAA
ATCTTTGGTTGGGTAAACTCCGTGACTCTGTTCTGTCCAGGCTGCAGAGC
ATCAAGAAACCCCTACCCCTTCCTTCGACCAAGGGCCCCCTCAATGCCAA
TGAAACCTCAAATTCCGAAGGTAATATTAGTGACTTTCAGCAGGGCGATC
CAATAATTCCACCCATCGAAGCTAACAAAATGATACCGAGGCCTCAAAAT
GGATTCGTCAGCCGAGCCCTCTACTACCGAGGATACTACATTAGGCGTTA
AAGGATTCGTGCCTAACATGAAATTCAGTATAAATTGAAAATTTTACACA
CCGGACTCGTAGTCTCGGATTAACCAAATCGAGCCTTGAAACACCGGCTA
TGTTACAAATTAGCTCAGTAATTTCTTGAACTTTAACAAATCATCAGCAG
TGAAATAAGCATGTGCAACATTTGGTCTAAAATCAATCAATCAATAAACA
TTTGTACCTTTAAAAAAAAAAAAAAAAAAAAAAAA
AT01237.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33218-RA | 810 | CG33218-RA | 121..731 | 1..611 | 3040 | 99.8 | Plus |
CG33218.a | 1237 | CG33218.a | 548..1158 | 1..611 | 3040 | 99.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 2224335..2224750 | 196..611 | 2065 | 99.8 | Plus |
chrX | 22417052 | chrX | 2224083..2224279 | 1..197 | 955 | 99 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:36:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2330411..2330826 | 196..611 | 2080 | 100 | Plus |
X | 23542271 | X | 2330159..2330355 | 1..197 | 970 | 99.5 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 2338509..2338924 | 196..611 | 2080 | 100 | Plus |
X | 23527363 | X | 2338257..2338453 | 1..197 | 970 | 99.4 | Plus |
Blast to na_te.dros performed 2019-03-16 00:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker | 7256 | Stalker STALKER 7256bp | 1360..1403 | 109..151 | 109 | 75 | Plus |
AT01237.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:42:24 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 2224083..2224279 | 1..197 | 98 | -> | Plus |
chrX | 2224337..2224750 | 198..611 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:11:57 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33218-RA | 1..264 | 138..401 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:00:27 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33218-RA | 1..264 | 138..401 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 14:38:40 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33218-RA | 1..611 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:00:27 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33218-RA | 1..611 | 1..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:42:24 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2330159..2330355 | 1..197 | 99 | -> | Plus |
X | 2330413..2330826 | 198..611 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:42:24 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2330159..2330355 | 1..197 | 99 | -> | Plus |
X | 2330413..2330826 | 198..611 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:42:24 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2330159..2330355 | 1..197 | 99 | -> | Plus |
X | 2330413..2330826 | 198..611 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:17 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2224192..2224388 | 1..197 | 99 | -> | Plus |
arm_X | 2224446..2224859 | 198..611 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:17 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2224192..2224388 | 1..197 | 99 | -> | Plus |
arm_X | 2224446..2224859 | 198..611 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:17 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2224192..2224388 | 1..197 | 99 | -> | Plus |
arm_X | 2224446..2224859 | 198..611 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:52:20 Download gff for
AT01237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2338511..2338924 | 198..611 | 100 | | Plus |
X | 2338257..2338453 | 1..197 | 99 | -> | Plus |
AT01237.hyp Sequence
Translation from 137 to 400
> AT01237.hyp
MAKINLWLGKLRDSVLSRLQSIKKPLPLPSTKGPLNANETSNSEGNISDF
QQGDPIIPPIEANKMIPRPQNGFVSRALYYRGYYIRR*
Sequence AT01237.hyp has no blast hits.
AT01237.pep Sequence
Translation from 137 to 400
> AT01237.pep
MAKINLWLGKLRDSVLSRLQSIKKPLPLPSTKGPLNANETSNSEGNISDF
QQGDPIIPPIEANKMIPRPQNGFVSRALYYRGYYIRR*
AT01237.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19222-PA | 105 | GM19222-PA | 1..105 | 1..87 | 291 | 61.8 | Plus |