Clone AT01267 Report

Search the DGRC for AT01267

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:12
Well:67
Vector:pOTB7
Associated Gene/TranscriptCG13611-RA
Protein status:AT01267.pep: gold
Preliminary Size:1434
Sequenced Size:1566

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13611 2002-01-01 Sim4 clustering to Release 2
CG13611 2002-06-12 Blastp of sequenced clone
CG13611 2003-01-01 Sim4 clustering to Release 3
CG13611 2008-04-29 Release 5.5 accounting
CG13611 2008-08-15 Release 5.9 accounting
CG13611 2008-12-18 5.12 accounting

Clone Sequence Records

AT01267.complete Sequence

1566 bp (1566 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122061

> AT01267.complete
GCGAGTTTTCAAATTTCTCAGTGAAATGAAGTGAGCATACAAATTGTTGG
CTGGACTAAATGGATTTGCCCTTTGGCACACAGACTCCGGAACTAGATGT
ACTGATTGTGGGCGGGGGCCTCTCGGGCCTGGCCTCTGCCCTGAAAATCC
TGGCCATGGAGAGCACCCTGAAGGTGAGAATGATTGAGGCTAGCGATGCC
TTGGGCGGCCTGATGGGCCAGAATAGCACCCGACTGGTGGATGCAGCACA
GCAGGACATGCTGGCCCTCCTGACCCTCATTCACTTGTCACCGCGGCGGC
GGAGGAGCATCAGTGGCAGTCTTCGGAGATGCTGGGATCTGGATCGTGGA
CTCACAGCTATGCCGGCCAAATTTGAACTAGGACGATACATCGATATGCT
GGACTTACGGATGCCCAAGTTTCGCTCGAAACGATTCAATCTTCGTGAGC
GAGTGTCCAACATGGAGCAGCACATTTGCCACCATTTGTTCTTTAGCAAG
TCAAGGAACTTCATGTTGAACCTGGTGCAGCTGGTCTGCGGTGTTCCTGC
CAATGAGGTGGACTACGATGTCTTTATGTCCGTCTGCAGCTCCTGTGGTG
GTCTCAAAGTTCTGATTGACTTCTACTTCACCTACCCCACAAGCTTCTAT
GAGATATCCACTCAGATGCTGATAGAGAACATTTTGGAGCAGCTGCAATT
TATCAAGATTATCCTAAACTGCAGAGCCGTCAGATTAGAGCACTTTAAGA
ACTATGTCCAGGTGACGGATGATCAGGGTAACAAGCACACGGCTCAGGCT
GCGATCCTGGCCATTCCCTGGAACAAGGTGCAGAAGTTGCACTTCGAGCC
GCGCATACCAAAGGTCTTCCTACCACGGACGACATCCAGATCTGGCCGAA
AGGGCCGCCAGGTGATCAGCCAGTTTCAGTTGCGATACGGCAAGTCCGTT
TGGACGGATCTCGGTTACTCCGGCAACTTTCTCAGCTCCCAGCCGATGGT
CAGTGGTCACGAGTGTCGGATGTCCAGCTTTTGCGGCTACGTGCTGCACT
TGCCGGAGGATCAGGACGAAGTGCTGCAAGATGTCGTCGATCTGTTGGCC
GAACACTTCGGCGAGGAGATGCGCCAGCCACTGGAGTGCCAGTGCTTCAC
GGATGAGCTGAATGTGGCGCAGCATAAGCCGCAGACCAAGCCCTGGCATC
GGGTCATCTGGTCCAGTTCCTCGGCCGTGGGCACCAGCTATCGCAGCCTG
ATGGGTGGTGCGGTGCAGAGTGGCTTCCGTGCGGCGGTGAATGCCGTCTT
TGTGGTGCGACCGCAGGTGGTCAGCTGGAAGGACATGCTCGTCGAGCAGC
CAAAGAATGGCCAGGATGTTGTCTCCGCCGGCAGAATTAGGGGACTCCTC
AGTCGCCTCAATCTCTACAATGTCACCTTCTACAGCTTCTTTGTGATCGG
ACTCATCTGGCTGCTGAACCTGGGTTATGCCAGGTCAATCTAGGGGATTA
CCACACCTGTGTACATATGTATCTATAGAAATTAAATGGTTGTTTTTGAA
AAAAAAAAAAAAAAAA

AT01267.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13611-RA 1748 CG13611-RA 87..1636 1..1550 7750 100 Plus
CG13611.a 1655 CG13611.a 1..1554 1..1550 7685 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20104022..20104947 623..1548 4630 100 Plus
chr3R 27901430 chr3R 20102943..20103381 1..439 2195 100 Plus
chr3R 27901430 chr3R 20103441..20103623 440..622 915 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:36:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24280651..24281578 623..1550 4640 100 Plus
3R 32079331 3R 24279572..24280010 1..439 2195 100 Plus
3R 32079331 3R 24280070..24280252 440..622 915 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24021482..24022409 623..1550 4640 100 Plus
3R 31820162 3R 24020403..24020841 1..439 2195 100 Plus
3R 31820162 3R 24020901..24021083 440..622 915 100 Plus
Blast to na_te.dros performed 2019-03-16 18:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1059..1131 1461..1537 123 66.2 Plus

AT01267.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:56:58 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20102943..20103381 1..439 100 -> Plus
chr3R 20103441..20103623 440..622 100 -> Plus
chr3R 20104022..20104947 623..1548 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:47:35 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 1..1434 60..1493 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:24:20 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 1..1434 60..1493 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:03 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 1..1434 60..1493 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:57 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 1..1434 60..1493 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:35 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 1..1434 60..1493 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:51:48 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 1..1548 1..1548 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:24:20 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 1..1548 1..1548 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:03 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 1..1548 1..1548 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:58 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 1..1548 1..1548 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:35 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
CG13611-RA 1..1548 1..1548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:58 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24279572..24280010 1..439 100 -> Plus
3R 24280070..24280252 440..622 100 -> Plus
3R 24280651..24281576 623..1548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:58 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24279572..24280010 1..439 100 -> Plus
3R 24280070..24280252 440..622 100 -> Plus
3R 24280651..24281576 623..1548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:58 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24279572..24280010 1..439 100 -> Plus
3R 24280070..24280252 440..622 100 -> Plus
3R 24280651..24281576 623..1548 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:03 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20105294..20105732 1..439 100 -> Plus
arm_3R 20105792..20105974 440..622 100 -> Plus
arm_3R 20106373..20107298 623..1548 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:58 Download gff for AT01267.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24020403..24020841 1..439 100 -> Plus
3R 24020901..24021083 440..622 100 -> Plus
3R 24021482..24022407 623..1548 100   Plus

AT01267.pep Sequence

Translation from 59 to 1492

> AT01267.pep
MDLPFGTQTPELDVLIVGGGLSGLASALKILAMESTLKVRMIEASDALGG
LMGQNSTRLVDAAQQDMLALLTLIHLSPRRRRSISGSLRRCWDLDRGLTA
MPAKFELGRYIDMLDLRMPKFRSKRFNLRERVSNMEQHICHHLFFSKSRN
FMLNLVQLVCGVPANEVDYDVFMSVCSSCGGLKVLIDFYFTYPTSFYEIS
TQMLIENILEQLQFIKIILNCRAVRLEHFKNYVQVTDDQGNKHTAQAAIL
AIPWNKVQKLHFEPRIPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVWTD
LGYSGNFLSSQPMVSGHECRMSSFCGYVLHLPEDQDEVLQDVVDLLAEHF
GEEMRQPLECQCFTDELNVAQHKPQTKPWHRVIWSSSSAVGTSYRSLMGG
AVQSGFRAAVNAVFVVRPQVVSWKDMLVEQPKNGQDVVSAGRIRGLLSRL
NLYNVTFYSFFVIGLIWLLNLGYARSI*

AT01267.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16121-PA 477 GF16121-PA 1..476 1..476 1923 72.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11273-PA 477 GG11273-PA 1..476 1..476 2370 91.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14186-PA 532 GH14186-PA 60..531 1..473 1304 52.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
shps-PA 477 CG13611-PA 1..477 1..477 2478 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22096-PA 477 GI22096-PA 1..477 1..477 1187 51.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23363-PA 481 GL23363-PA 5..477 3..476 1518 59.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12404-PA 481 GA12404-PA 5..477 3..476 1537 60.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26582-PA 477 GM26582-PA 1..477 1..477 2485 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21084-PA 477 GD21084-PA 1..477 1..477 2486 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24210-PA 475 GJ24210-PA 1..472 1..474 1335 52.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11738-PA 478 GK11738-PA 1..477 1..477 1569 59.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23466-PA 478 GE23466-PA 1..477 1..476 2308 88.9 Plus

AT01267.hyp Sequence

Translation from 59 to 1492

> AT01267.hyp
MDLPFGTQTPELDVLIVGGGLSGLASALKILAMESTLKVRMIEASDALGG
LMGQNSTRLVDAAQQDMLALLTLIHLSPRRRRSISGSLRRCWDLDRGLTA
MPAKFELGRYIDMLDLRMPKFRSKRFNLRERVSNMEQHICHHLFFSKSRN
FMLNLVQLVCGVPANEVDYDVFMSVCSSCGGLKVLIDFYFTYPTSFYEIS
TQMLIENILEQLQFIKIILNCRAVRLEHFKNYVQVTDDQGNKHTAQAAIL
AIPWNKVQKLHFEPRIPKVFLPRTTSRSGRKGRQVISQFQLRYGKSVWTD
LGYSGNFLSSQPMVSGHECRMSSFCGYVLHLPEDQDEVLQDVVDLLAEHF
GEEMRQPLECQCFTDELNVAQHKPQTKPWHRVIWSSSSAVGTSYRSLMGG
AVQSGFRAAVNAVFVVRPQVVSWKDMLVEQPKNGQDVVSAGRIRGLLSRL
NLYNVTFYSFFVIGLIWLLNLGYARSI*

AT01267.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13611-PA 477 CG13611-PA 1..477 1..477 2478 100 Plus