Clone AT01314 Report

Search the DGRC for AT01314

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:13
Well:14
Vector:pOTB7
Associated Gene/TranscriptCG13203-RD
Protein status:AT01314.pep: gold
Preliminary Size:1614
Sequenced Size:1643

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13203 2002-01-01 Sim4 clustering to Release 2
CG13203 2003-01-01 Sim4 clustering to Release 3
CG13203 2008-04-29 Stopped prior to 5.5

Clone Sequence Records

AT01314.complete Sequence

1643 bp assembled on 2009-02-02

GenBank Submission: BT058040.1

> AT01314.complete
GAGTAGGTCACTCGAAACTTTCCATTTTCATTTCCCACTTTCCTCATGCA
TTTCCATTTCCATTTCGATTTCGATATCCCCAAACGTTACACTCTGTAGC
TACAATATTCATTATCCGTTTGCAGCAGCGCCAAGGCGGACAAGAATCGC
ATTAATCTGAATATAGTGCTGTCGCAGACCATAAGGGCCACCAACGAGAG
AGAGCAGGAACCGGAACCGGAAGTGGACGCGGACCTGGAAGCGGAGCGAG
CCAGCGATATCGAGGGCAGCCATCCGGTTGAGAACCCGGACATCCAATTG
AGCATCTCGCCGGCGCTGACCGTCCAGCGGCGTCCGCCTTTGGTGCGTGC
TATGTCCGCTCCGGTCCGCGGACTGGACGAGAGCAGCAAGGGCGTCATAG
CCGCCAGCAAGCGCAGCCAGCAGAAATTGCGTCGACGCAAGATCTTCACG
AGAACGCCCTCGTCCTCCGTACCGCTCGATGTCATCGGGGACAACTCTAC
GTCCTCGTCCTCCGTCGCCGGAAACGCATCCAAGAAGGCTTTGAATCGGG
CACGCAGCGTCGTTGCACCCGATGTGATTACCCTGGTGTCCCTGTTGAGT
TCCGAGGGCAGCGACTCCGAGCGGGAGGATAACAGTTCAGTGGCGGTATC
ATCGCCGCCAACTGGCGGGTCGGATAAACAAACATCGGGCGCCTCGCAGC
GAAGGGCGCCTTTGTTGAGGAAGACGGGCAAATCGGTCTCGTTTCAAGAC
AGCTATCCGCCCACCTTCCAACTGGCCTCCAAGGAGTACTCGCACATGAT
ACGCCGCGGTTCGATAGCACCTCTGGCAGCCCGAATCCGAGCCAATCGAC
CGCCCACAGCGCCGCCAGTTTCCATTTTCCTAACCGACGTCCAGGCCAAA
ATGGACCAGCAGCCGAAGAAGGAGGGTGGAGCTGACCCACCCGTTGTCAC
CTTATCGCCGGACGAGGCCAAGAAGGAGAACAATAACAACGCGGCCAATT
GCGAGGACCAACAACCGCAGCCGGATCACAACTATCCGGCGTATGTGCGC
AGTCTGAAGGAACGCGAGTGCTGGAAGTTGCACCAGAAGATGGGAGCCAA
GGGCGTCAGTGTGAGCTATGAAACGGTGTTGAGGGGTATGCTCACGCCCA
CCGAGTTCCGGCACTTTCAAAAGCAGCGGGAGCAGGAGGAGGCCCGAGTT
CTCGAGGAGGCGGAGGCCGCCGAAGCGGCTGCTGCAGCCGCAATCCTTGA
GAGCGGCGAAAAGGATGGTCGCAAGCCTCCAGTCACGGCCATCGAACGCC
TCTCGGAAGCTCTGCTCCAGAGCAAGTAGGGAACTGACGGATGGGAAACC
AAGTTCCAGTTCCATGGAATCCGACCATTTAATTGCATTTGCCCCCAGAG
GATGTAGTAGCAGTAGTGGAGCACTCGTTAAAACGCAATCGCACCTCGCT
GAGACACCATATCCGGCGTCCACGCGTAGTTCTAGATGGTACCGTAGACC
CATTGAACCCGTATTTACTGTATGGCGGAACTCAAGCTTATGTGGACGCT
GAGCCTGGCCAATAATTGTAGACCCAACGTAGATCCTTAACAATAAAGAG
TACTAGAAGACACCTCAAAGCCAGAAAAAAAAAAAAAAAAAAA

AT01314.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13203.a 1617 CG13203.a 1..1617 1..1624 7870 99 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7263678..7264566 736..1624 4430 99.9 Plus
chr2R 21145070 chr2R 7262633..7263368 1..736 3575 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:36:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11376228..11377110 736..1625 4295 99.1 Plus
2R 25286936 2R 11375183..11375918 1..736 3575 99 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11377427..11378217 736..1526 3940 99.8 Plus
2R 25260384 2R 11376382..11377117 1..736 3575 99 Plus
2R 25260384 2R 11378217..11378309 1533..1625 465 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:35:22 has no hits.

AT01314.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:36:10 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7262633..7263368 1..736 99 -> Plus
chr2R 7263679..7264566 737..1624 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:04 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RA 423..1614 126..1329 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:33:54 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RC 423..1626 126..1329 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:14:47 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RC 423..1626 126..1329 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:45:22 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RC 423..1626 126..1329 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-02 18:58:39 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RA 423..1902 126..1624 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:33:53 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RD 1..1617 1..1624 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:47 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RD 1..1617 1..1624 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:45:22 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
CG13203-RD 1..1617 1..1624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:10 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11375183..11375918 1..736 99 -> Plus
2R 11376229..11377109 737..1624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:10 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11375183..11375918 1..736 99 -> Plus
2R 11376229..11377109 737..1624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:10 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11375183..11375918 1..736 99 -> Plus
2R 11376229..11377109 737..1624 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:47 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7262688..7263423 1..736 99 -> Plus
arm_2R 7263734..7264614 737..1624 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:07:11 Download gff for AT01314.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11376382..11377117 1..736 99 -> Plus
2R 11377428..11378308 737..1624 99   Plus

AT01314.pep Sequence

Translation from 351 to 1328

> AT01314.pep
MSAPVRGLDESSKGVIAASKRSQQKLRRRKIFTRTPSSSVPLDVIGDNST
SSSSVAGNASKKALNRARSVVAPDVITLVSLLSSEGSDSEREDNSSVAVS
SPPTGGSDKQTSGASQRRAPLLRKTGKSVSFQDSYPPTFQLASKEYSHMI
RRGSIAPLAARIRANRPPTAPPVSIFLTDVQAKMDQQPKKEGGADPPVVT
LSPDEAKKENNNNAANCEDQQPQPDHNYPAYVRSLKERECWKLHQKMGAK
GVSVSYETVLRGMLTPTEFRHFQKQREQEEARVLEEAEAAEAAAAAAILE
SGEKDGRKPPVTAIERLSEALLQSK*

AT01314.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12552-PA 554 GF12552-PA 215..554 1..325 1197 82.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20200-PA 542 GG20200-PA 223..542 1..325 1392 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21385-PA 620 GH21385-PA 277..618 1..323 934 63.7 Plus
Dgri\GH13940-PA 310 GH13940-PA 1..308 31..323 844 62.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13203-PD 325 CG13203-PD 1..325 1..325 1627 100 Plus
CG13203-PC 541 CG13203-PC 217..541 1..325 1627 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18562-PA 571 GI18562-PA 242..569 1..323 885 65.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11689-PA 554 GL11689-PA 223..554 1..325 968 72.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12118-PB 332 GA12118-PB 1..332 1..325 970 72.2 Plus
Dpse\GA12118-PA 554 GA12118-PA 223..554 1..325 968 72.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21287-PA 535 GM21287-PA 217..535 1..325 1623 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10795-PA 532 GD10795-PA 217..532 1..318 1624 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20355-PA 542 GJ20355-PA 227..540 1..323 906 65.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21415-PA 570 GK21415-PA 227..570 1..325 839 65.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12360-PA 549 GE12360-PA 224..549 1..325 1412 94.2 Plus

AT01314.hyp Sequence

Translation from 351 to 1328

> AT01314.hyp
MSAPVRGLDESSKGVIAASKRSQQKLRRRKIFTRTPSSSVPLDVIGDNST
SSSSVAGNASKKALNRARSVVAPDVITLVSLLSSEGSDSEREDNSSVAVS
SPPTGGSDKQTSGASQRRAPLLRKTGKSVSFQDSYPPTFQLASKEYSHMI
RRGSIAPLAARIRANRPPTAPPVSIFLTDVQAKMDQQPKKEGGADPPVVT
LSPDEAKKENNNNAANCEDQQPQPDHNYPAYVRSLKERECWKLHQKMGAK
GVSVSYETVLRGMLTPTEFRHFQKQREQEEARVLEEAEAAEAAAAAAILE
SGEKDGRKPPVTAIERLSEALLQSK*

AT01314.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13203-PD 325 CG13203-PD 1..325 1..325 1627 100 Plus
CG13203-PC 541 CG13203-PC 217..541 1..325 1627 100 Plus