BDGP Sequence Production Resources |
Search the DGRC for AT01380
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 13 |
Well: | 80 |
Vector: | pOTB7 |
Associated Gene/Transcript | CG12857-RA |
Protein status: | AT01380.pep: gold |
Preliminary Size: | 1323 |
Sequenced Size: | 1615 |
Gene | Date | Evidence |
---|---|---|
CG12857 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12857 | 2002-04-21 | Blastp of sequenced clone |
CG12857 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12857 | 2008-04-29 | Release 5.5 accounting |
CG12857 | 2008-08-15 | Release 5.9 accounting |
CG12857 | 2008-12-18 | 5.12 accounting |
1615 bp (1615 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113191
> AT01380.complete GTAGCCGTGCAGTCAAAAATCCAAAACAAGAAAACCAAATTTCGAAATGG AGGAGCTAATGAGGCAGAACGGACAGAAATGCGAGAGGCAGGAACTCACC TGCAGCGTTTTATTTACCAATCCCAAGCTTAGTGCCGAGAAGTTATCCTC CAATGATGAAATAAACTCCATTGCGAGATTCGTATCGAAGGCGGAGGATC TCGAAATGCATAGAGTGTTCAGTAAGATATCAAAGAATGGTGTCGAGGAG ACCACGTCTCTGAATCGCTCCCTCTTCGAGTTCGGTCATAATTTCGAGGA TGCCGATGGCTGGCTGAAACTGGAGCAGCCTTGCAAGGATCGGCTGGCCA CGGTGCTGCGCTACATGTTCGAGTCCCATCTGAAGACCACTGTGCAGATA GAAATCAACAATATGTACTTCAATTGCCACTTCATCGTGCTGCAGGTGTA CTCTCGCTTCTTTAGTGAACTGGAGATGATTCCGCTGCTGGTCACCCTGC CCGAGAAGATCGTGTCCCAGAAGGCCTTTATGCTCTCCTACAAATGGATG CTGAGCGATGAGCCCGTCCTGGAGCTGGCTCACATTGTGGAGGTCTATGT GGCCGCCACTTATTTGAGGATCTCTGGTCTGGCGGCGCATTGTTGGAAAT ATTTCGATGATGAGGAATACTACAACGAGGATACGGCATGTGTCCTATAC GTCGAGTCGAAGGACAATCCCGCCATGGATGTAGTTCGCAATTTGATGCT GACTAGGATCCGCAAGTTTCTGCTCACCTTTGTGGCCACCAGGGATTTCC TCGATCTGCCGACCTCCCATCTGATTTTTTTGCTCGAATCCGATCAAATC TGTGTGAACACCGAGATTGAGGTTTTCTTTATAGCTGTTCGATGGCTGGG TCACGATTGGAACAAGAGGAAAGTGCACGTACGTCGTTTAATGTCCTGTA TTCGATTCAACCTGATGCCATTGTGGTATCTACTATATGCGCGACGGGAG GAGGATCACCCGTTGGTGATGAAGCTGATTTTCAACCCGGAGGTGGAGTA CAAGATCGACGAATCCATATCGAGAATAACGTCGCGCATGTACGAGGATG CCTTGGAGGGCAATGACGCACAGAGTGAGGAATACGCAAGTGATTCCGGA CAGCGAAACTGGATATGCGATAGCTTGTGCAGCTATTATCACGGCGTCGG TTGTCCCAATACCCGGGAAATTCGTTTCAAACACTTCGAGGATTACCTTT CGGAATTACAACAATGCTCCAAAGATCACTGGTCTCAGGTGATATTTCAG GACCCGAGTAAAAAGATTGACTGTTGCAGCACAAGGAAGATAAAATCGGA CGATTTTGTTGCCGATTAACTATTGAGTTTGAATAGTAACGACTAGAATT CAAATTTGCGGGCTTCAGTTTGTGCTAGTATAACAACTTGGCACACTTTT CTGTTATACATTGTACACTTCGTTCATTTGATATTTATGAAACAAATCAG CATATTTTTAATAATATATTTTTTAAAATGTACATCAACATTTTAAAAAA AAAGCAAGTGGTTTAATAAATATAATTAATATTTAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12857-RA | 1620 | CG12857-RA | 37..1620 | 1..1584 | 7920 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10645959..10646711 | 873..121 | 3765 | 100 | Minus |
chr2R | 21145070 | chr2R | 10645193..10645907 | 1584..870 | 3560 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 10646769..10646888 | 120..1 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14758673..14759425 | 873..121 | 3765 | 100 | Minus |
2R | 25286936 | 2R | 14757906..14758621 | 1585..870 | 3580 | 100 | Minus |
2R | 25286936 | 2R | 14759483..14759602 | 120..1 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14759872..14760624 | 873..121 | 3765 | 100 | Minus |
2R | 25260384 | 2R | 14759105..14759820 | 1585..870 | 3580 | 100 | Minus |
2R | 25260384 | 2R | 14760682..14760801 | 120..1 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 4496..4629 | 1444..1582 | 140 | 60.4 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 4554..4677 | 1455..1579 | 127 | 56.8 | Plus |
Dbuz\ISBu3 | 993 | Dbuz\ISBu3 ISBU3 993bp | 400..449 | 11..59 | 121 | 74 | Plus |
Tabor | 7345 | Tabor TABOR 7345bp | 2393..2465 | 22..95 | 115 | 63.5 | Plus |
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 792..865 | 1552..1477 | 114 | 63.2 | Minus |
hopper | 1435 | hopper DMTRDNA 1435bp Derived from X80025 (g510507) (Rel. 44, Last updated, Version 11). | 164..208 | 1503..1549 | 112 | 76.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10645217..10645905 | 872..1560 | 95 | <- | Minus |
chr2R | 10645961..10646711 | 121..871 | 100 | <- | Minus |
chr2R | 10646769..10646888 | 1..120 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12857-RA | 1..1323 | 47..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12857-RA | 1..1323 | 47..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12857-RA | 1..1323 | 47..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12857-RA | 1..1323 | 47..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12857-RA | 1..1323 | 47..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12857-RA | 1..1431 | 9..1439 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12857-RA | 1..1431 | 9..1439 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12857-RA | 1..1584 | 1..1584 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12857-RA | 1..1431 | 9..1439 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12857-RA | 1..1584 | 1..1584 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14757907..14758619 | 872..1584 | 100 | <- | Minus |
2R | 14758675..14759425 | 121..871 | 100 | <- | Minus |
2R | 14759483..14759602 | 1..120 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14757907..14758619 | 872..1584 | 100 | <- | Minus |
2R | 14758675..14759425 | 121..871 | 100 | <- | Minus |
2R | 14759483..14759602 | 1..120 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14757907..14758619 | 872..1584 | 100 | <- | Minus |
2R | 14758675..14759425 | 121..871 | 100 | <- | Minus |
2R | 14759483..14759602 | 1..120 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10645412..10646124 | 872..1584 | 100 | <- | Minus |
arm_2R | 10646180..10646930 | 121..871 | 100 | <- | Minus |
arm_2R | 10646988..10647107 | 1..120 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14759106..14759818 | 872..1584 | 100 | <- | Minus |
2R | 14759874..14760624 | 121..871 | 100 | <- | Minus |
2R | 14760682..14760801 | 1..120 | 100 | Minus |
Translation from 46 to 1368
> AT01380.hyp MEELMRQNGQKCERQELTCSVLFTNPKLSAEKLSSNDEINSIARFVSKAE DLEMHRVFSKISKNGVEETTSLNRSLFEFGHNFEDADGWLKLEQPCKDRL ATVLRYMFESHLKTTVQIEINNMYFNCHFIVLQVYSRFFSELEMIPLLVT LPEKIVSQKAFMLSYKWMLSDEPVLELAHIVEVYVAATYLRISGLAAHCW KYFDDEEYYNEDTACVLYVESKDNPAMDVVRNLMLTRIRKFLLTFVATRD FLDLPTSHLIFLLESDQICVNTEIEVFFIAVRWLGHDWNKRKVHVRRLMS CIRFNLMPLWYLLYARREEDHPLVMKLIFNPEVEYKIDESISRITSRMYE DALEGNDAQSEEYASDSGQRNWICDSLCSYYHGVGCPNTREIRFKHFEDY LSELQQCSKDHWSQVIFQDPSKKIDCCSTRKIKSDDFVAD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12857-PA | 440 | CG12857-PA | 1..440 | 1..440 | 2331 | 100 | Plus |
CG12857-PB | 293 | CG12857-PB | 1..277 | 1..277 | 1431 | 99.6 | Plus |
CG30357-PA | 451 | CG30357-PA | 81..443 | 70..431 | 491 | 33.7 | Plus |
CG9970-PA | 484 | CG9970-PA | 140..450 | 107..406 | 290 | 27.8 | Plus |
CG10801-PA | 558 | CG10801-PA | 207..515 | 116..424 | 272 | 24.1 | Plus |
Translation from 46 to 1368
> AT01380.pep MEELMRQNGQKCERQELTCSVLFTNPKLSAEKLSSNDEINSIARFVSKAE DLEMHRVFSKISKNGVEETTSLNRSLFEFGHNFEDADGWLKLEQPCKDRL ATVLRYMFESHLKTTVQIEINNMYFNCHFIVLQVYSRFFSELEMIPLLVT LPEKIVSQKAFMLSYKWMLSDEPVLELAHIVEVYVAATYLRISGLAAHCW KYFDDEEYYNEDTACVLYVESKDNPAMDVVRNLMLTRIRKFLLTFVATRD FLDLPTSHLIFLLESDQICVNTEIEVFFIAVRWLGHDWNKRKVHVRRLMS CIRFNLMPLWYLLYARREEDHPLVMKLIFNPEVEYKIDESISRITSRMYE DALEGNDAQSEEYASDSGQRNWICDSLCSYYHGVGCPNTREIRFKHFEDY LSELQQCSKDHWSQVIFQDPSKKIDCCSTRKIKSDDFVAD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13514-PA | 442 | GF13514-PA | 1..438 | 1..431 | 1376 | 58.4 | Plus |
Dana\GF12567-PA | 929 | GF12567-PA | 164..541 | 13..412 | 462 | 31.4 | Plus |
Dana\GF16288-PA | 409 | GF16288-PA | 82..398 | 107..427 | 449 | 30.7 | Plus |
Dana\GF21107-PA | 555 | GF21107-PA | 184..552 | 60..431 | 368 | 27.6 | Plus |
Dana\GF11239-PA | 434 | GF11239-PA | 112..424 | 90..405 | 360 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22401-PA | 441 | GG22401-PA | 1..437 | 1..433 | 1875 | 80.4 | Plus |
Dere\GG10620-PA | 844 | GG10620-PA | 121..469 | 74..421 | 463 | 30.7 | Plus |
Dere\GG11552-PA | 413 | GG11552-PA | 86..402 | 107..427 | 404 | 29.6 | Plus |
Dere\GG19913-PA | 428 | GG19913-PA | 131..428 | 115..413 | 380 | 32.1 | Plus |
Dere\GG17626-PA | 485 | GG17626-PA | 152..483 | 89..431 | 359 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21146-PA | 430 | GH21146-PA | 1..428 | 1..426 | 1203 | 54.6 | Plus |
Dgri\GH16425-PA | 330 | GH16425-PA | 33..308 | 116..404 | 255 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12857-PA | 440 | CG12857-PA | 1..440 | 1..440 | 2331 | 100 | Plus |
CG12857-PB | 293 | CG12857-PB | 1..277 | 1..277 | 1431 | 99.6 | Plus |
CG30357-PA | 451 | CG30357-PA | 81..443 | 70..431 | 491 | 33.7 | Plus |
CG9970-PA | 484 | CG9970-PA | 140..450 | 107..406 | 290 | 27.8 | Plus |
CG10801-PA | 558 | CG10801-PA | 207..515 | 116..424 | 272 | 24.1 | Plus |
CG14785-PA | 470 | CG14785-PA | 218..465 | 185..428 | 258 | 29.1 | Plus |
CG10801-PB | 527 | CG10801-PB | 207..484 | 116..424 | 257 | 25 | Plus |
CG10752-PA | 539 | CG10752-PA | 55..358 | 104..419 | 244 | 22.6 | Plus |
CG8260-PB | 409 | CG8260-PB | 94..381 | 118..404 | 225 | 26.2 | Plus |
CG8260-PA | 415 | CG8260-PA | 100..387 | 118..404 | 225 | 26.2 | Plus |
CG12692-PC | 553 | CG12692-PC | 44..336 | 95..381 | 206 | 24.7 | Plus |
CG12692-PB | 553 | CG12692-PB | 44..336 | 95..381 | 206 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18745-PA | 431 | GI18745-PA | 1..427 | 1..426 | 1275 | 58 | Plus |
Dmoj\GI23030-PA | 407 | GI23030-PA | 67..394 | 97..427 | 438 | 28.6 | Plus |
Dmoj\GI20387-PA | 503 | GI20387-PA | 168..498 | 93..428 | 367 | 31 | Plus |
Dmoj\GI14906-PA | 464 | GI14906-PA | 63..455 | 12..428 | 362 | 26.1 | Plus |
Dmoj\GI15701-PA | 466 | GI15701-PA | 68..457 | 12..428 | 358 | 25.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10625-PA | 336 | GL10625-PA | 1..319 | 92..413 | 984 | 54.3 | Plus |
Dper\GL23923-PA | 391 | GL23923-PA | 5..351 | 36..404 | 378 | 28.8 | Plus |
Dper\GL14381-PA | 481 | GL14381-PA | 161..476 | 98..428 | 308 | 27.1 | Plus |
Dper\GL21489-PA | 439 | GL21489-PA | 13..425 | 5..427 | 291 | 24 | Plus |
Dper\GL25890-PA | 427 | GL25890-PA | 53..404 | 64..406 | 290 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11860-PA | 399 | GA11860-PA | 1..382 | 1..413 | 1083 | 49.2 | Plus |
Dpse\GA30461-PA | 451 | GA30461-PA | 78..434 | 74..428 | 428 | 33.6 | Plus |
Dpse\GA27108-PA | 385 | GA27108-PA | 5..382 | 36..432 | 375 | 28.7 | Plus |
Dpse\GA13243-PA | 481 | GA13243-PA | 161..476 | 98..428 | 305 | 27.1 | Plus |
Dpse\GA27347-PA | 339 | GA27347-PA | 10..330 | 87..422 | 286 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20186-PA | 444 | GM20186-PA | 1..444 | 1..440 | 2117 | 88.1 | Plus |
Dsec\GM14096-PA | 465 | GM14096-PA | 109..335 | 95..322 | 303 | 31.4 | Plus |
Dsec\GM18977-PA | 485 | GM18977-PA | 162..480 | 98..428 | 272 | 24.9 | Plus |
Dsec\GM12292-PA | 571 | GM12292-PA | 216..519 | 116..419 | 233 | 26 | Plus |
Dsec\GM24620-PA | 547 | GM24620-PA | 42..254 | 100..313 | 213 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25659-PA | 444 | GD25659-PA | 1..444 | 1..440 | 2104 | 87.2 | Plus |
Dsim\GD13368-PA | 465 | GD13368-PA | 109..335 | 95..322 | 303 | 31.4 | Plus |
Dsim\GD12686-PA | 557 | GD12686-PA | 42..349 | 100..419 | 243 | 23.4 | Plus |
Dsim\GD16641-PA | 570 | GD16641-PA | 215..543 | 116..436 | 238 | 26.7 | Plus |
Dsim\GD16301-PA | 565 | GD16301-PA | 57..298 | 108..342 | 186 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21767-PA | 429 | GJ21767-PA | 1..425 | 1..426 | 1282 | 57.9 | Plus |
Dvir\GJ24621-PA | 415 | GJ24621-PA | 55..414 | 74..440 | 456 | 28.7 | Plus |
Dvir\GJ22113-PA | 500 | GJ22113-PA | 155..494 | 93..427 | 391 | 28.9 | Plus |
Dvir\GJ15232-PA | 469 | GJ15232-PA | 69..442 | 13..412 | 363 | 27.5 | Plus |
Dvir\GJ15338-PA | 463 | GJ15338-PA | 63..454 | 13..428 | 347 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19618-PA | 440 | GK19618-PA | 1..435 | 1..437 | 1314 | 58.5 | Plus |
Dwil\GK11754-PA | 437 | GK11754-PA | 2..397 | 36..427 | 437 | 28.5 | Plus |
Dwil\GK21566-PA | 757 | GK21566-PA | 70..361 | 135..427 | 392 | 32.1 | Plus |
Dwil\GK19524-PA | 376 | GK19524-PA | 67..368 | 120..419 | 338 | 31.7 | Plus |
Dwil\GK14125-PA | 450 | GK14125-PA | 108..430 | 95..406 | 315 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12290-PA | 446 | GE12290-PA | 1..446 | 1..440 | 1912 | 80.5 | Plus |
Dyak\GE22796-PA | 828 | GE22796-PA | 110..452 | 74..415 | 488 | 33 | Plus |
Dyak\GE23737-PA | 355 | GE23737-PA | 2..344 | 88..427 | 454 | 31.3 | Plus |
Dyak\GE11436-PA | 431 | GE11436-PA | 111..431 | 90..413 | 358 | 31.4 | Plus |
Dyak\GE17529-PA | 485 | GE17529-PA | 152..479 | 89..427 | 358 | 29.2 | Plus |