Clone AT01380 Report

Search the DGRC for AT01380

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:13
Well:80
Vector:pOTB7
Associated Gene/TranscriptCG12857-RA
Protein status:AT01380.pep: gold
Preliminary Size:1323
Sequenced Size:1615

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12857 2002-01-01 Sim4 clustering to Release 2
CG12857 2002-04-21 Blastp of sequenced clone
CG12857 2003-01-01 Sim4 clustering to Release 3
CG12857 2008-04-29 Release 5.5 accounting
CG12857 2008-08-15 Release 5.9 accounting
CG12857 2008-12-18 5.12 accounting

Clone Sequence Records

AT01380.complete Sequence

1615 bp (1615 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113191

> AT01380.complete
GTAGCCGTGCAGTCAAAAATCCAAAACAAGAAAACCAAATTTCGAAATGG
AGGAGCTAATGAGGCAGAACGGACAGAAATGCGAGAGGCAGGAACTCACC
TGCAGCGTTTTATTTACCAATCCCAAGCTTAGTGCCGAGAAGTTATCCTC
CAATGATGAAATAAACTCCATTGCGAGATTCGTATCGAAGGCGGAGGATC
TCGAAATGCATAGAGTGTTCAGTAAGATATCAAAGAATGGTGTCGAGGAG
ACCACGTCTCTGAATCGCTCCCTCTTCGAGTTCGGTCATAATTTCGAGGA
TGCCGATGGCTGGCTGAAACTGGAGCAGCCTTGCAAGGATCGGCTGGCCA
CGGTGCTGCGCTACATGTTCGAGTCCCATCTGAAGACCACTGTGCAGATA
GAAATCAACAATATGTACTTCAATTGCCACTTCATCGTGCTGCAGGTGTA
CTCTCGCTTCTTTAGTGAACTGGAGATGATTCCGCTGCTGGTCACCCTGC
CCGAGAAGATCGTGTCCCAGAAGGCCTTTATGCTCTCCTACAAATGGATG
CTGAGCGATGAGCCCGTCCTGGAGCTGGCTCACATTGTGGAGGTCTATGT
GGCCGCCACTTATTTGAGGATCTCTGGTCTGGCGGCGCATTGTTGGAAAT
ATTTCGATGATGAGGAATACTACAACGAGGATACGGCATGTGTCCTATAC
GTCGAGTCGAAGGACAATCCCGCCATGGATGTAGTTCGCAATTTGATGCT
GACTAGGATCCGCAAGTTTCTGCTCACCTTTGTGGCCACCAGGGATTTCC
TCGATCTGCCGACCTCCCATCTGATTTTTTTGCTCGAATCCGATCAAATC
TGTGTGAACACCGAGATTGAGGTTTTCTTTATAGCTGTTCGATGGCTGGG
TCACGATTGGAACAAGAGGAAAGTGCACGTACGTCGTTTAATGTCCTGTA
TTCGATTCAACCTGATGCCATTGTGGTATCTACTATATGCGCGACGGGAG
GAGGATCACCCGTTGGTGATGAAGCTGATTTTCAACCCGGAGGTGGAGTA
CAAGATCGACGAATCCATATCGAGAATAACGTCGCGCATGTACGAGGATG
CCTTGGAGGGCAATGACGCACAGAGTGAGGAATACGCAAGTGATTCCGGA
CAGCGAAACTGGATATGCGATAGCTTGTGCAGCTATTATCACGGCGTCGG
TTGTCCCAATACCCGGGAAATTCGTTTCAAACACTTCGAGGATTACCTTT
CGGAATTACAACAATGCTCCAAAGATCACTGGTCTCAGGTGATATTTCAG
GACCCGAGTAAAAAGATTGACTGTTGCAGCACAAGGAAGATAAAATCGGA
CGATTTTGTTGCCGATTAACTATTGAGTTTGAATAGTAACGACTAGAATT
CAAATTTGCGGGCTTCAGTTTGTGCTAGTATAACAACTTGGCACACTTTT
CTGTTATACATTGTACACTTCGTTCATTTGATATTTATGAAACAAATCAG
CATATTTTTAATAATATATTTTTTAAAATGTACATCAACATTTTAAAAAA
AAAGCAAGTGGTTTAATAAATATAATTAATATTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

AT01380.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12857-RA 1620 CG12857-RA 37..1620 1..1584 7920 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10645959..10646711 873..121 3765 100 Minus
chr2R 21145070 chr2R 10645193..10645907 1584..870 3560 99.9 Minus
chr2R 21145070 chr2R 10646769..10646888 120..1 600 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:36:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14758673..14759425 873..121 3765 100 Minus
2R 25286936 2R 14757906..14758621 1585..870 3580 100 Minus
2R 25286936 2R 14759483..14759602 120..1 600 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14759872..14760624 873..121 3765 100 Minus
2R 25260384 2R 14759105..14759820 1585..870 3580 100 Minus
2R 25260384 2R 14760682..14760801 120..1 600 100 Minus
Blast to na_te.dros performed 2019-03-16 22:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 4496..4629 1444..1582 140 60.4 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 4554..4677 1455..1579 127 56.8 Plus
Dbuz\ISBu3 993 Dbuz\ISBu3 ISBU3 993bp 400..449 11..59 121 74 Plus
Tabor 7345 Tabor TABOR 7345bp 2393..2465 22..95 115 63.5 Plus
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 792..865 1552..1477 114 63.2 Minus
hopper 1435 hopper DMTRDNA 1435bp Derived from X80025 (g510507) (Rel. 44, Last updated, Version 11). 164..208 1503..1549 112 76.6 Plus

AT01380.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:52:15 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10645217..10645905 872..1560 95 <- Minus
chr2R 10645961..10646711 121..871 100 <- Minus
chr2R 10646769..10646888 1..120 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:47:45 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
CG12857-RA 1..1323 47..1369 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:02:55 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
CG12857-RA 1..1323 47..1369 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:14:07 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
CG12857-RA 1..1323 47..1369 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:13 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
CG12857-RA 1..1323 47..1369 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:03 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
CG12857-RA 1..1323 47..1369 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:43:27 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
CG12857-RA 1..1431 9..1439 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:02:55 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
CG12857-RA 1..1431 9..1439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:07 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
CG12857-RA 1..1584 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:13 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
CG12857-RA 1..1431 9..1439 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:03 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
CG12857-RA 1..1584 1..1584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:52:15 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14757907..14758619 872..1584 100 <- Minus
2R 14758675..14759425 121..871 100 <- Minus
2R 14759483..14759602 1..120 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:52:15 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14757907..14758619 872..1584 100 <- Minus
2R 14758675..14759425 121..871 100 <- Minus
2R 14759483..14759602 1..120 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:52:15 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14757907..14758619 872..1584 100 <- Minus
2R 14758675..14759425 121..871 100 <- Minus
2R 14759483..14759602 1..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:07 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10645412..10646124 872..1584 100 <- Minus
arm_2R 10646180..10646930 121..871 100 <- Minus
arm_2R 10646988..10647107 1..120 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:30 Download gff for AT01380.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14759106..14759818 872..1584 100 <- Minus
2R 14759874..14760624 121..871 100 <- Minus
2R 14760682..14760801 1..120 100   Minus

AT01380.hyp Sequence

Translation from 46 to 1368

> AT01380.hyp
MEELMRQNGQKCERQELTCSVLFTNPKLSAEKLSSNDEINSIARFVSKAE
DLEMHRVFSKISKNGVEETTSLNRSLFEFGHNFEDADGWLKLEQPCKDRL
ATVLRYMFESHLKTTVQIEINNMYFNCHFIVLQVYSRFFSELEMIPLLVT
LPEKIVSQKAFMLSYKWMLSDEPVLELAHIVEVYVAATYLRISGLAAHCW
KYFDDEEYYNEDTACVLYVESKDNPAMDVVRNLMLTRIRKFLLTFVATRD
FLDLPTSHLIFLLESDQICVNTEIEVFFIAVRWLGHDWNKRKVHVRRLMS
CIRFNLMPLWYLLYARREEDHPLVMKLIFNPEVEYKIDESISRITSRMYE
DALEGNDAQSEEYASDSGQRNWICDSLCSYYHGVGCPNTREIRFKHFEDY
LSELQQCSKDHWSQVIFQDPSKKIDCCSTRKIKSDDFVAD*

AT01380.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12857-PA 440 CG12857-PA 1..440 1..440 2331 100 Plus
CG12857-PB 293 CG12857-PB 1..277 1..277 1431 99.6 Plus
CG30357-PA 451 CG30357-PA 81..443 70..431 491 33.7 Plus
CG9970-PA 484 CG9970-PA 140..450 107..406 290 27.8 Plus
CG10801-PA 558 CG10801-PA 207..515 116..424 272 24.1 Plus

AT01380.pep Sequence

Translation from 46 to 1368

> AT01380.pep
MEELMRQNGQKCERQELTCSVLFTNPKLSAEKLSSNDEINSIARFVSKAE
DLEMHRVFSKISKNGVEETTSLNRSLFEFGHNFEDADGWLKLEQPCKDRL
ATVLRYMFESHLKTTVQIEINNMYFNCHFIVLQVYSRFFSELEMIPLLVT
LPEKIVSQKAFMLSYKWMLSDEPVLELAHIVEVYVAATYLRISGLAAHCW
KYFDDEEYYNEDTACVLYVESKDNPAMDVVRNLMLTRIRKFLLTFVATRD
FLDLPTSHLIFLLESDQICVNTEIEVFFIAVRWLGHDWNKRKVHVRRLMS
CIRFNLMPLWYLLYARREEDHPLVMKLIFNPEVEYKIDESISRITSRMYE
DALEGNDAQSEEYASDSGQRNWICDSLCSYYHGVGCPNTREIRFKHFEDY
LSELQQCSKDHWSQVIFQDPSKKIDCCSTRKIKSDDFVAD*

AT01380.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13514-PA 442 GF13514-PA 1..438 1..431 1376 58.4 Plus
Dana\GF12567-PA 929 GF12567-PA 164..541 13..412 462 31.4 Plus
Dana\GF16288-PA 409 GF16288-PA 82..398 107..427 449 30.7 Plus
Dana\GF21107-PA 555 GF21107-PA 184..552 60..431 368 27.6 Plus
Dana\GF11239-PA 434 GF11239-PA 112..424 90..405 360 29.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22401-PA 441 GG22401-PA 1..437 1..433 1875 80.4 Plus
Dere\GG10620-PA 844 GG10620-PA 121..469 74..421 463 30.7 Plus
Dere\GG11552-PA 413 GG11552-PA 86..402 107..427 404 29.6 Plus
Dere\GG19913-PA 428 GG19913-PA 131..428 115..413 380 32.1 Plus
Dere\GG17626-PA 485 GG17626-PA 152..483 89..431 359 27.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21146-PA 430 GH21146-PA 1..428 1..426 1203 54.6 Plus
Dgri\GH16425-PA 330 GH16425-PA 33..308 116..404 255 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12857-PA 440 CG12857-PA 1..440 1..440 2331 100 Plus
CG12857-PB 293 CG12857-PB 1..277 1..277 1431 99.6 Plus
CG30357-PA 451 CG30357-PA 81..443 70..431 491 33.7 Plus
CG9970-PA 484 CG9970-PA 140..450 107..406 290 27.8 Plus
CG10801-PA 558 CG10801-PA 207..515 116..424 272 24.1 Plus
CG14785-PA 470 CG14785-PA 218..465 185..428 258 29.1 Plus
CG10801-PB 527 CG10801-PB 207..484 116..424 257 25 Plus
CG10752-PA 539 CG10752-PA 55..358 104..419 244 22.6 Plus
CG8260-PB 409 CG8260-PB 94..381 118..404 225 26.2 Plus
CG8260-PA 415 CG8260-PA 100..387 118..404 225 26.2 Plus
CG12692-PC 553 CG12692-PC 44..336 95..381 206 24.7 Plus
CG12692-PB 553 CG12692-PB 44..336 95..381 206 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18745-PA 431 GI18745-PA 1..427 1..426 1275 58 Plus
Dmoj\GI23030-PA 407 GI23030-PA 67..394 97..427 438 28.6 Plus
Dmoj\GI20387-PA 503 GI20387-PA 168..498 93..428 367 31 Plus
Dmoj\GI14906-PA 464 GI14906-PA 63..455 12..428 362 26.1 Plus
Dmoj\GI15701-PA 466 GI15701-PA 68..457 12..428 358 25.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10625-PA 336 GL10625-PA 1..319 92..413 984 54.3 Plus
Dper\GL23923-PA 391 GL23923-PA 5..351 36..404 378 28.8 Plus
Dper\GL14381-PA 481 GL14381-PA 161..476 98..428 308 27.1 Plus
Dper\GL21489-PA 439 GL21489-PA 13..425 5..427 291 24 Plus
Dper\GL25890-PA 427 GL25890-PA 53..404 64..406 290 26.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11860-PA 399 GA11860-PA 1..382 1..413 1083 49.2 Plus
Dpse\GA30461-PA 451 GA30461-PA 78..434 74..428 428 33.6 Plus
Dpse\GA27108-PA 385 GA27108-PA 5..382 36..432 375 28.7 Plus
Dpse\GA13243-PA 481 GA13243-PA 161..476 98..428 305 27.1 Plus
Dpse\GA27347-PA 339 GA27347-PA 10..330 87..422 286 26.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20186-PA 444 GM20186-PA 1..444 1..440 2117 88.1 Plus
Dsec\GM14096-PA 465 GM14096-PA 109..335 95..322 303 31.4 Plus
Dsec\GM18977-PA 485 GM18977-PA 162..480 98..428 272 24.9 Plus
Dsec\GM12292-PA 571 GM12292-PA 216..519 116..419 233 26 Plus
Dsec\GM24620-PA 547 GM24620-PA 42..254 100..313 213 25.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25659-PA 444 GD25659-PA 1..444 1..440 2104 87.2 Plus
Dsim\GD13368-PA 465 GD13368-PA 109..335 95..322 303 31.4 Plus
Dsim\GD12686-PA 557 GD12686-PA 42..349 100..419 243 23.4 Plus
Dsim\GD16641-PA 570 GD16641-PA 215..543 116..436 238 26.7 Plus
Dsim\GD16301-PA 565 GD16301-PA 57..298 108..342 186 23.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21767-PA 429 GJ21767-PA 1..425 1..426 1282 57.9 Plus
Dvir\GJ24621-PA 415 GJ24621-PA 55..414 74..440 456 28.7 Plus
Dvir\GJ22113-PA 500 GJ22113-PA 155..494 93..427 391 28.9 Plus
Dvir\GJ15232-PA 469 GJ15232-PA 69..442 13..412 363 27.5 Plus
Dvir\GJ15338-PA 463 GJ15338-PA 63..454 13..428 347 26.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19618-PA 440 GK19618-PA 1..435 1..437 1314 58.5 Plus
Dwil\GK11754-PA 437 GK11754-PA 2..397 36..427 437 28.5 Plus
Dwil\GK21566-PA 757 GK21566-PA 70..361 135..427 392 32.1 Plus
Dwil\GK19524-PA 376 GK19524-PA 67..368 120..419 338 31.7 Plus
Dwil\GK14125-PA 450 GK14125-PA 108..430 95..406 315 26.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12290-PA 446 GE12290-PA 1..446 1..440 1912 80.5 Plus
Dyak\GE22796-PA 828 GE22796-PA 110..452 74..415 488 33 Plus
Dyak\GE23737-PA 355 GE23737-PA 2..344 88..427 454 31.3 Plus
Dyak\GE11436-PA 431 GE11436-PA 111..431 90..413 358 31.4 Plus
Dyak\GE17529-PA 485 GE17529-PA 152..479 89..427 358 29.2 Plus