Clone AT01390 Report

Search the DGRC for AT01390

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:13
Well:90
Vector:pOTB7
Associated Gene/TranscriptCG8398-RC
Protein status:AT01390.pep: gold
Preliminary Size:1947
Sequenced Size:1658

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8398 2004-07-14 Blastp of sequenced clone
CG8398 2008-04-29 Release 5.5 accounting
CG8398 2008-08-15 Release 5.9 accounting
CG8398 2008-12-18 5.12 accounting

Clone Sequence Records

AT01390.complete Sequence

1658 bp (1658 high quality bases) assembled on 2004-07-14

GenBank Submission: BT015316

> AT01390.complete
CATATTTAAGTTCGACTTATGCCTTTCCGGGCCGAACACAAGGCAGAGGA
CGAGAAGGTGCAGATCACAGGTCCGGAGGACAACCAACACCAACAAAACA
ACAACAACAACGATTGGGAGCCGAACAGGATGGTGCTACCGTTTGGACTT
GGACCCGATGGCCATCACGTGGATGCCATTCAGAGTGCTCCGGCGCCCAG
TGCGCCCCCCGCCCACATGATGCCACCAGCCTACGCCCGGGGACAAACAA
ACATATACACAGGTGTTCCGATCATCGTGAATCCCTACATAGACTTCATC
GTGGTCAACGGGGATGATCGATACATGATCAGATGCGAACGAAAGTCGGT
ACTCGAGCGGAGCGTGGAGCTGGCCAAGCTTATCCACGCCGGTCCGAACA
GCGGTCGCAAGAGCGACAATCATTTCCAGATACTCAACGTGGACAAGAAC
GACTTCGAGCTGATCGTCCGCTACATGGAGAAGCACTTCATTCCCTACCG
CGATCACAAGCACCTGCTCAAGATACTGGAGCTATCCGATCGCTTCAACG
TTCCAGATCTGATAATCTACTGCATTCGCGAACTTGATCTCAGAATCTCG
AGCGCCACGGCACTGGACATCTTCAAGGCGCTGTGGTTCTACCAGGGCAT
CGCACTGACCAACCAGCACCAAACGGTGATCACCACCCAGGAGACGGGCC
AGCAGCTGGCCAGGAAGAAGGCGACCAAGGCGAAGGCGGCGGCCAAGCAG
CTGGCGGCTGCCAAGGCCTCTCAGTCCACCGAAAACGGAGCGGAGGGCGA
TGGAGCCCAGCAGAACCTCATTCCTAACCCAAATCCCTTTACCACCGAAG
ATTACGGCGTGGCGCTGCTGCACAACACGCTCCAGCTGATCGATATGCAC
GCAGAGCTGCAGCTTTCGATGCCGGAGATCAGTGATCTCAGGTTCGAGGA
GCTGGAGACGCTGGTCAAGAGGGATACCTTGCAGCTCAGGTCGGAGGTCA
CTCTGTTCGAGTGCCTGGCCACGTGGAGTCTGGCGGAGTGCGCCCGCAAG
CATATCGATGCCACGCCGGAGAACCGTCGCACTGTCCTCGGTCCACTATG
CCTCACACCTCGTTACTTGCGGATGACCGCCAGCGAATTCCGGCGATGCT
GCGAACGCCTGGAGCTACTGCCACCCACTGAGATATCTCTTATCACCGAC
GCCCTCGATGGCAAAAAGCTAAAGAACCTCACCGATCAGCAGGCGGAGCT
GCTGGAGAAGTTCCGCCAGCCGCGTGCCGAATACGCCCGGATGCCCGTCC
ACCTGAGCGACCGGAGCAGTCCGAAGAACTATCCCAAGAAGATGCGGCTG
GCCCACGAGGGTCGGCCCACGGAGGATGGATGCTGGGAGAAGGTGGGAAT
GAACTGTCTCCGCATCTTCGTCTGCATATTTGACTGATCCGAGCAGTCCG
ATGGGGAGGAGGAGGAGGAGGAGGAGGACGGCGATGAGGAGGAGGAAGAT
GATGGATCCGATGAGGAAAATGGAAATGGAAATAGAGGGGGCAGAAATCG
ACCCAGAGACAACGGAGGATGAGATGATGATCCCACATAGACTTGTTGCA
TTAAACGAATATTAGCGCTTATGAATTACTTAAAAAAAAAAAAAAAAAAA
AAAAAAAA

AT01390.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8398.i 2911 CG8398.i 375..1966 41..1632 7885 99.6 Plus
CG8398-RA 2089 CG8398-RA 375..1966 41..1632 7885 99.6 Plus
CG8398.h 2366 CG8398.h 375..1966 41..1632 7885 99.6 Plus
CG8398.i 2911 CG8398.i 52..92 1..41 205 100 Plus
CG8398-RA 2089 CG8398-RA 52..92 1..41 205 100 Plus
CG8398.h 2366 CG8398.h 52..92 1..41 205 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6609107..6609754 561..1208 3195 99.5 Plus
chr3L 24539361 chr3L 6608511..6609041 41..565 2500 98.5 Plus
chr3L 24539361 chr3L 6610214..6610635 1210..1631 2035 98.8 Plus
chr3L 24539361 chr3L 6601773..6601813 1..41 205 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:36:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6616666..6617316 561..1211 3240 99.8 Plus
3L 28110227 3L 6616076..6616600 41..565 2610 99.8 Plus
3L 28110227 3L 6617767..6618189 1210..1632 2055 99.1 Plus
3L 28110227 3L 6609364..6609404 1..41 205 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6609766..6610416 561..1211 3240 99.8 Plus
3L 28103327 3L 6609176..6609700 41..565 2610 99.8 Plus
3L 28103327 3L 6610867..6611289 1210..1632 2055 99 Plus
3L 28103327 3L 6602464..6602504 1..41 205 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:18:08 has no hits.

AT01390.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:19:11 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6601773..6601815 1..42 95 -> Plus
chr3L 6608513..6609037 43..561 98 -> Plus
chr3L 6609108..6609756 562..1210 99 -> Plus
chr3L 6610215..6610635 1211..1631 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:47:49 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 218..1614 41..1437 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:35:23 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 218..1614 41..1437 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:22:43 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 218..1614 41..1437 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:19:15 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 218..1614 41..1437 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:45 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 218..1614 41..1437 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:42:05 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RB 1..1618 1..1628 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:35:23 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RD 512..2094 41..1623 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:43 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 40..82 1..42 95 -> Plus
CG8398-RA 365..1953 43..1631 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:19:16 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RB 1..1618 1..1628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:45 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 40..82 1..42 95 -> Plus
CG8398-RA 365..1953 43..1631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:11 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6609364..6609406 1..42 95 -> Plus
3L 6616078..6616596 43..561 100 -> Plus
3L 6616667..6617315 562..1210 99 -> Plus
3L 6617768..6618188 1211..1631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:11 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6609364..6609406 1..42 95 -> Plus
3L 6616078..6616596 43..561 100 -> Plus
3L 6616667..6617315 562..1210 99 -> Plus
3L 6617768..6618188 1211..1631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:11 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6609364..6609406 1..42 95 -> Plus
3L 6616078..6616596 43..561 100 -> Plus
3L 6616667..6617315 562..1210 99 -> Plus
3L 6617768..6618188 1211..1631 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:43 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6602464..6602506 1..42 95 -> Plus
arm_3L 6609178..6609696 43..561 100 -> Plus
arm_3L 6609767..6610415 562..1210 99 -> Plus
arm_3L 6610868..6611288 1211..1631 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:56:28 Download gff for AT01390.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6609178..6609696 43..561 100 -> Plus
3L 6609767..6610415 562..1210 99 -> Plus
3L 6610868..6611288 1211..1631 99   Plus
3L 6602464..6602506 1..42 95 -> Plus

AT01390.hyp Sequence

Translation from 1 to 1436

> AT01390.hyp
IFKFDLCLSGPNTIAEDEKVQITGPEDNQHQQNNNNNDWEPNRMVLPFGL
GPDGHHVDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPIIVNPYIDFI
VVNGDDRYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNHFQILNVDKN
DFELIVRYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYCIRELDLRIS
SATALDIFKALWFYQGIALTNQHQTVITTQETGQQLARKKATKAKAAAKQ
LAAAKASQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLHNTLQLIDMH
AELQLSMPEISDLRFEELETLVKRDTLQLRSEVTLFECLATWSLAECARK
HIDATPENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLPPTEISLITD
ALDGKKLKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSPKNYPKKMRL
AHEGRPTEDGCWEKVGMNCLRIFVCIFD*

AT01390.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8398-PA 537 CG8398-PA 74..537 15..478 2443 100 Plus
CG8398-PE 435 CG8398-PE 1..435 44..478 2277 100 Plus
CG8398-PD 435 CG8398-PD 1..435 44..478 2277 100 Plus
CG8398-PC 435 CG8398-PC 1..435 44..478 2277 100 Plus

AT01390.pep Sequence

Translation from 18 to 1436

> AT01390.pep
MPFRAEHKAEDEKVQITGPEDNQHQQNNNNNDWEPNRMVLPFGLGPDGHH
VDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPIIVNPYIDFIVVNGDD
RYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNHFQILNVDKNDFELIV
RYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYCIRELDLRISSATALD
IFKALWFYQGIALTNQHQTVITTQETGQQLARKKATKAKAAAKQLAAAKA
SQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLHNTLQLIDMHAELQLS
MPEISDLRFEELETLVKRDTLQLRSEVTLFECLATWSLAECARKHIDATP
ENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLPPTEISLITDALDGKK
LKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSPKNYPKKMRLAHEGRP
TEDGCWEKVGMNCLRIFVCIFD*

AT01390.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23544-PA 586 GF23544-PA 97..522 27..456 1979 91.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15352-PA 568 GG15352-PA 77..523 10..458 2088 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15166-PA 539 GH15166-PA 105..539 38..472 1946 88.5 Plus
Dgri\GH13939-PA 376 GH13939-PA 1..376 96..472 1704 87.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
axed-PA 537 CG8398-PA 69..537 4..472 2448 99.1 Plus
axed-PE 435 CG8398-PE 1..435 38..472 2277 100 Plus
axed-PD 435 CG8398-PD 1..435 38..472 2277 100 Plus
axed-PC 435 CG8398-PC 1..435 38..472 2277 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12105-PA 576 GI12105-PA 148..576 38..472 1815 80 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13271-PA 354 GL13271-PA 186..354 304..472 814 87.6 Plus
Dper\GL13271-PA 354 GL13271-PA 108..186 34..112 396 87.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21046-PA 583 GA21046-PA 120..552 34..465 2002 89.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14792-PA 501 GM14792-PA 182..458 182..458 1451 98.9 Plus
Dsec\GM14792-PA 501 GM14792-PA 68..182 3..116 415 85.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13964-PA 567 GD13964-PA 68..524 3..458 2108 95.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13379-PA 514 GJ13379-PA 77..514 34..472 1943 85.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12549-PA 562 GK12549-PA 55..521 4..467 1992 83.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21571-PA 595 GE21571-PA 96..546 6..458 2079 95.4 Plus