Clone AT01605 Report

Search the DGRC for AT01605

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:16
Well:5
Vector:pOTB7
Associated Gene/TranscriptCG14689-RA
Protein status:AT01605.pep: gold
Preliminary Size:1365
Sequenced Size:1680

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14689 2002-01-01 Sim4 clustering to Release 2
CG14689 2002-05-18 Blastp of sequenced clone
CG14689 2003-01-01 Sim4 clustering to Release 3
CG14689 2008-04-29 Release 5.5 accounting
CG14689 2008-08-15 Release 5.9 accounting
CG14689 2008-12-18 5.12 accounting

Clone Sequence Records

AT01605.complete Sequence

1680 bp (1680 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118667

> AT01605.complete
CTTTGTACACACTTTACCACTAATTATAGAAACAGATACAGAAATACATA
ACAGAAAAAACCTTTAAAAACACAATTATAATTAAAAATATTCAAAAAAA
GACTGAGTCATGAAGAGAGTCCATGTGGACAACTACACACCGAAGTACTA
TAGTGGCAAGTGGTCCTGGAGCGCCGAAAAGGATTGCCTGGAATTCGAGC
CGCACAACGATCTGGAGAATGCCAGGGAGCGCTACATCACCACCAATGGC
TATAAGTTCCTGCGCATCATCGACCAGGAGGAGGAGCTTATCTTCCGGCA
GGCTTACGTGCGGGATACGGGCACCTATGACTTTGACACCTTGGTGATCA
ACGACATCCGTGACCTGGTCCTCTTCCTGATGCCCAGCGATTTTCTGACC
TACCGGTTCGTGGAGTTCATGCACCGCCCGGCGGTTCACCGTCTGATCCA
TGCGCTCATCATTTATTTCGAATACTTTCTGCGTATGGTGGAGTTTGTGC
TGGTGCGGCGCGACGAATTGGCCGATCAGATCCAGAGCGATCAGACCATC
GATATGAAGAAGACATTCTCGATCTATCTCAGTCAGTATCGCCTCCTGGT
GGCCCGCAACTACAGTGTGATTCTGAAGGGAGAGGGCGATATGGCCAAAT
ACTACCATATGAAGGAGATTATCAATATTTCGGATACCAGTCGCGACCGC
GTCTTCCACGAGCAGTTTCTGGCCGTGATGACCCAGATTGTTTGGATCTG
CATGCATCGCCGTGCGTACAATGTCATTGAGATGGAAATGAACCGTCTGT
TTCGTTCCGATCACTTTGTTATGGCACGTCCGGAGTATCTGAGCTTTACG
CCGGCGGAGCGCAGTTTACTGTACGGTCGGAACCATAAAATCGTTAACTA
TCGCACCCAGATATCGCCGCTCGTCCAGGAGTTGGAGCACGTGGCGGAGG
AGGACATGCCCATCCTGTGGATTGGCGAGCGAAAGTACCGAGGCAACGAC
AAGCGCATTGCCGAGATGGAGCTGGAGTACATTGTGCCGGGACCACAGCT
GCGTATGATCGATGTGGCACACGGCATACTGGGACATCCGAAGGATCTGT
ACAACACCATCCTAGACCTGGACTGGCCCACAGTTCGCTACTCAAACTTT
TCGCTTGGCTACGATCCGTACCACATCATTCGCCAGCCGCACTTGGACAT
TCCCAAGATCGACGCCTTGAAAGCGCGCAAGATGAATGAAAACTACGAGC
ATTTCTACAAGGTGTATCGCATCTACGAGCCGCACAGCGTGCAGATCCTG
CAGAAGTGGCTCAAGCGGGACAAGCTCGTCCAGTTCTATCGCTCCGGGGG
ACTGCTGCTCACCAACGTGGTATCCCGGTGCGAGAAGGAACTGGCCGAAA
AGGTACCGGTAACCAAGGTCGACCAGGTCATATCCAATTACTTTAAGGTG
AAGTCCAGGCTGCGCAAGGGATCTCCATATGAACCGGACAACGTTAGCAT
CACCTCCTCGCGGATCGGGGGCTTCAATTCGCCGCGCCAAAAGAAAACGC
CACAGGAATACTATTTCGATTGATTTGAGGTCGTACACATCCATTAGGTT
TTCAAGAGACTTCAAATACTTCAAAATTATTTATTCGTGAATAAAATACT
TATAAATCTTGAAAAAAAAAAAAAAAAAAA

AT01605.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14689-RA 1664 CG14689-RA 1..1664 1..1664 8320 100 Plus
CG31391-RA 1708 CG31391-RA 87..279 110..302 470 82.9 Plus
CG31467.a 1647 CG31467.a 142..322 122..302 395 81.2 Plus
CG31467.a 1647 CG31467.a 939..1179 913..1153 320 75.5 Plus
CG31391-RA 1708 CG31391-RA 997..1136 1014..1153 250 78.5 Plus
CG31391-RA 1708 CG31391-RA 836..970 853..987 210 77 Plus
CG31467.a 1647 CG31467.a 730..846 704..820 195 77.7 Plus
CG31391-RA 1708 CG31391-RA 686..803 703..820 185 77.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6535132..6536792 1661..1 8305 100 Minus
chr3R 27901430 chr3R 6529485..6530534 1153..110 815 72.3 Minus
chr3R 27901430 chr3R 6531229..6531856 1153..526 485 71.8 Minus
chr3R 27901430 chr3R 6532086..6532266 302..122 395 81.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:37:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10709585..10711248 1664..1 8320 100 Minus
3R 32079331 3R 10703940..10704560 1153..533 600 73.1 Minus
3R 32079331 3R 10704797..10704989 302..110 470 82.9 Minus
3R 32079331 3R 10705685..10706312 1153..526 470 71.7 Minus
3R 32079331 3R 10706542..10706722 302..122 395 81.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10450416..10452079 1664..1 8320 100 Minus
3R 31820162 3R 10445628..10445820 302..110 470 82.9 Minus
3R 31820162 3R 10447373..10447553 302..122 395 81.2 Minus
3R 31820162 3R 10446516..10446756 1153..913 320 75.5 Minus
3R 31820162 3R 10444771..10444910 1153..1014 250 78.5 Minus
3R 31820162 3R 10444937..10445071 987..853 210 77 Minus
3R 31820162 3R 10446849..10446965 820..704 195 77.7 Minus
3R 31820162 3R 10445104..10445221 820..703 185 77.1 Minus
Blast to na_te.dros performed on 2019-03-16 09:18:24 has no hits.

AT01605.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:19:39 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6535132..6536792 1..1661 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:48:11 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 1..1464 110..1573 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:28 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 1..1464 110..1573 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:56:06 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 1..1464 110..1573 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:39:50 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 1..1464 110..1573 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:59 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 1..1464 110..1573 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:23:29 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 1..1661 1..1661 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:27 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 1..1661 1..1661 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:06 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 1..1661 1..1661 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:39:50 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 1..1661 1..1661 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:59 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14689-RA 1..1661 1..1661 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:19:39 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10709588..10711248 1..1661 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:19:39 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10709588..10711248 1..1661 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:19:39 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10709588..10711248 1..1661 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:06 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6535310..6536970 1..1661 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:12:11 Download gff for AT01605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10450419..10452079 1..1661 100   Minus

AT01605.hyp Sequence

Translation from 109 to 1572

> AT01605.hyp
MKRVHVDNYTPKYYSGKWSWSAEKDCLEFEPHNDLENARERYITTNGYKF
LRIIDQEEELIFRQAYVRDTGTYDFDTLVINDIRDLVLFLMPSDFLTYRF
VEFMHRPAVHRLIHALIIYFEYFLRMVEFVLVRRDELADQIQSDQTIDMK
KTFSIYLSQYRLLVARNYSVILKGEGDMAKYYHMKEIINISDTSRDRVFH
EQFLAVMTQIVWICMHRRAYNVIEMEMNRLFRSDHFVMARPEYLSFTPAE
RSLLYGRNHKIVNYRTQISPLVQELEHVAEEDMPILWIGERKYRGNDKRI
AEMELEYIVPGPQLRMIDVAHGILGHPKDLYNTILDLDWPTVRYSNFSLG
YDPYHIIRQPHLDIPKIDALKARKMNENYEHFYKVYRIYEPHSVQILQKW
LKRDKLVQFYRSGGLLLTNVVSRCEKELAEKVPVTKVDQVISNYFKVKSR
LRKGSPYEPDNVSITSSRIGGFNSPRQKKTPQEYYFD*

AT01605.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14689-PA 487 CG14689-PA 1..487 1..487 2577 100 Plus
CG31391-PA 480 CG31391-PA 1..478 1..477 1723 67.7 Plus
CG31467-PA 480 CG31467-PA 1..469 1..469 1685 68.2 Plus

AT01605.pep Sequence

Translation from 109 to 1572

> AT01605.pep
MKRVHVDNYTPKYYSGKWSWSAEKDCLEFEPHNDLENARERYITTNGYKF
LRIIDQEEELIFRQAYVRDTGTYDFDTLVINDIRDLVLFLMPSDFLTYRF
VEFMHRPAVHRLIHALIIYFEYFLRMVEFVLVRRDELADQIQSDQTIDMK
KTFSIYLSQYRLLVARNYSVILKGEGDMAKYYHMKEIINISDTSRDRVFH
EQFLAVMTQIVWICMHRRAYNVIEMEMNRLFRSDHFVMARPEYLSFTPAE
RSLLYGRNHKIVNYRTQISPLVQELEHVAEEDMPILWIGERKYRGNDKRI
AEMELEYIVPGPQLRMIDVAHGILGHPKDLYNTILDLDWPTVRYSNFSLG
YDPYHIIRQPHLDIPKIDALKARKMNENYEHFYKVYRIYEPHSVQILQKW
LKRDKLVQFYRSGGLLLTNVVSRCEKELAEKVPVTKVDQVISNYFKVKSR
LRKGSPYEPDNVSITSSRIGGFNSPRQKKTPQEYYFD*

AT01605.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20669-PA 487 GF20669-PA 1..487 1..487 2285 85.8 Plus
Dana\GF17445-PA 465 GF17445-PA 1..464 1..462 1706 66.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17274-PA 487 GG17274-PA 1..487 1..487 2531 95.9 Plus
Dere\GG17278-PA 477 GG17278-PA 1..472 1..471 1726 68.1 Plus
Dere\GG17277-PA 483 GG17277-PA 1..454 1..453 1703 69.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17359-PA 490 GH17359-PA 1..490 1..487 1812 67.7 Plus
Dgri\GH17029-PA 487 GH17029-PA 1..485 1..486 1530 57.9 Plus
Dgri\GH13925-PA 208 GH13925-PA 1..206 277..486 531 46.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14689-PA 487 CG14689-PA 1..487 1..487 2577 100 Plus
CG31391-PA 480 CG31391-PA 1..478 1..477 1723 67.7 Plus
CG31467-PA 480 CG31467-PA 1..469 1..469 1685 68.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23898-PA 491 GI23898-PA 1..490 1..487 1698 63.5 Plus
Dmoj\GI11569-PA 480 GI11569-PA 1..480 1..487 1576 59.8 Plus
Dmoj\GI21012-PA 486 GI21012-PA 1..467 1..467 1533 60.2 Plus
Dmoj\GI12233-PA 477 GI12233-PA 1..455 1..453 1532 61.4 Plus
Dmoj\GI21013-PA 453 GI21013-PA 1..449 1..452 1225 50.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12631-PA 489 GL12631-PA 1..489 1..487 1940 72.5 Plus
Dper\GL12630-PA 455 GL12630-PA 1..454 1..453 1592 64.9 Plus
Dper\GL12629-PA 456 GL12629-PA 1..455 1..453 1525 63.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13178-PA 489 GA13178-PA 1..489 1..487 1940 72.5 Plus
Dpse\GA27575-PA 455 GA27575-PA 1..454 1..453 1586 64.9 Plus
Dpse\GA27574-PA 456 GA27574-PA 1..455 1..453 1525 63.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26158-PA 487 GM26158-PA 1..487 1..487 2600 99.6 Plus
Dsec\GM26162-PA 480 GM26162-PA 1..468 1..467 1735 68.7 Plus
Dsec\GM26161-PA 480 GM26161-PA 1..472 1..475 1710 68.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20711-PA 487 GD20711-PA 1..487 1..487 2607 99.8 Plus
Dsim\GD20715-PA 480 GD20715-PA 1..468 1..467 1735 68.7 Plus
Dsim\GD20714-PA 480 GD20714-PA 1..472 1..475 1708 68.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23991-PA 494 GJ23991-PA 1..492 1..487 1788 66.7 Plus
Dvir\GJ11249-PA 484 GJ11249-PA 1..484 1..487 1673 64.5 Plus
Dvir\GJ21935-PA 500 GJ21935-PA 1..486 1..486 1617 62 Plus
Dvir\GJ21936-PA 458 GJ21936-PA 1..455 1..453 1576 62.9 Plus
Dvir\GJ23990-PA 487 GJ23990-PA 1..487 1..487 1518 59.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11284-PA 498 GK11284-PA 1..479 1..476 1941 74 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24675-PA 487 GE24675-PA 1..487 1..487 2563 97.7 Plus
Dyak\GE24680-PA 483 GE24680-PA 1..482 1..480 1722 66.9 Plus
Dyak\GE24679-PA 484 GE24679-PA 1..454 1..453 1680 69.1 Plus