Clone AT01668 Report

Search the DGRC for AT01668

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:16
Well:68
Vector:pOTB7
Associated Gene/TranscriptCG42675-RB
Protein status:AT01668.pep: gold
Preliminary Size:1773
Sequenced Size:1706

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10999 2002-09-24 Blastp of sequenced clone
CG10999 2003-01-01 Sim4 clustering to Release 3
CG10999 2008-04-29 Release 5.5 accounting
CG10999 2008-08-15 Release 5.9 accounting
CG10999 2008-12-18 5.12 accounting

Clone Sequence Records

AT01668.complete Sequence

1706 bp (1706 high quality bases) assembled on 2002-09-24

GenBank Submission: BT001256

> AT01668.complete
GTTCAATCGATTCAGATTTCGGCACCACATAGTGTTTAAGATCTATTGGC
AAATTTCAAACGTATTTTCCTTACCTTTCGCGAGTTTTTTCGGTCTAGAT
TTGTAGTTTTGTAAATACGATAACCGTTTACTTTAATCGAAGTTGTTCGT
TTTTGGCGAGATAAACTGAATTCAATTGGATTGATCGCCACCCACGCCCA
ACCACATCCACTGACGCCTCCTGGCGACATTTACTGGCCTGCCTCTGCTG
CTGTTGCTGCTGCCGACGACGATTTGTTTGTTTTGTGCCAACTTTGATGA
CTCACCGGAGAGACTCAGACTGGAACTGAATCTGAGACTGAGTCTGAGCC
GGGTCTGCGGCAGCTAAACAAGCTCAGTCGCGTCATCACCTTGACCAAAG
CCCACACACGAGCTCTGCAGCAATCGCATCGAATTCAAACGACTGCCATC
GCATCGAACAGACTCCATTTGGCAATGGCGTCACAAGGTTCCGGAGATAT
GAAGACCTCAAGGCTGGCGCAAATGCAGATGCGTTTCCAGCAGCGCACGC
AACAGGAGCAGGAGGTGCGTAGGCGGGAGCTGATGAGCACGAAGTCAAGT
GCCGAGAACCTGGCCACTGGAGCACCCAGTGCCGCCACCACCAGGTTGAT
CGGGAATGGGAAAGTGCGCCAGATGTTCGACGAGCGCCGCCGCGGGGCGG
GCATTGATCGCAGCAATCCCCTCAAGCCGATCGGCACTCTGCCCTCGCCA
CCCGCCCAAACAAAATCTCGCCCGCAGCCCCCAATGCAGCGTCTCGTCAA
GGGCGTGGCCGACTTGACCATGCGGGATGCACCAAATGCACCAGGCAGGA
GGATCACTAGTGACAGCAATAACAATAAGTTCGCCACGCCCCGCGGGACT
TTGAATCGCAACCTTAAGCCCGTGGTCACCCGCAAGACACCGCCGGCCCA
GGAGACCACGCTCCACCAACGTTCTCCCGCGCCACAACGCAGTCCCAAGA
TTCAGGCGACCCAACGAGTAAGTGGAGGAACCGGTGCTGCCCCGACAGCC
GGTCGTCTTTCGCCACCATTTGTTCGACGGGCGGAACCCAAATCACCAGT
TAAAAAGGTCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTT
TATGCCGCTACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCAC
GAGGAGGTGTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCGATGC
CTCCAAGCAGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATGAAGT
CGAAGGGCAATCGCAACCGTTCAACTTACAGTAGTGCTGCCCAGCAGAAG
GGTCTGACCACTGGAGTGAAGAAGAACAACTGGCGTAAGAAGCACGAGGA
CTTCATTCAGTCGATTAGAGCGGCCAAGCAGGTGAAGGCGCACTTGGCGC
GCGGCGGCAAGTTGAGCGACCTGCCACCACCGCCACCTTCGGAGAATCCA
GACTATGTCCAGTGTCCCCACTGTGGTCGCCGATTCAACGAACAGGCTGC
GGAGCGTCATATCCCCAAGTGCGTTAACATGGTGCACAACAAGCCCCGTA
ACGGTCCGCCGGCCAAGAGGCGTTGAGTGGTGATTGGGAATAGATATTCG
CCCATTCTTTTACTTGTGATAAAGAAGTTTTATGATTGAAAAAAAAAAAA
AAAAAA

AT01668.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10999-RA 1724 CG10999-RA 29..1719 1..1691 8455 100 Plus
CG10999-RB 1773 CG10999-RB 260..1768 183..1691 7545 100 Plus
CG10999-RC 652 CG10999-RC 36..647 1080..1691 3060 100 Plus
CG10999-RB 1773 CG10999-RB 1..171 13..183 855 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1643895..1644467 1116..1688 2865 100 Plus
chr3R 27901430 chr3R 1643160..1643715 526..1081 2780 100 Plus
chr3R 27901430 chr3R 1640585..1640930 183..528 1730 100 Plus
chr3R 27901430 chr3R 1640314..1640496 1..183 915 100 Plus
chr3R 27901430 chr3R 1643798..1643835 1080..1117 190 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:37:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5818248..5818823 1116..1691 2880 100 Plus
3R 32079331 3R 5817513..5818068 526..1081 2780 100 Plus
3R 32079331 3R 5814938..5815283 183..528 1730 100 Plus
3R 32079331 3R 5814667..5814849 1..183 915 100 Plus
3R 32079331 3R 5818151..5818188 1080..1117 190 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5559079..5559654 1116..1691 2880 100 Plus
3R 31820162 3R 5558344..5558899 526..1081 2780 100 Plus
3R 31820162 3R 5555769..5556114 183..528 1730 100 Plus
3R 31820162 3R 5555498..5555680 1..183 915 100 Plus
3R 31820162 3R 5558982..5559019 1080..1117 190 100 Plus
Blast to na_te.dros performed 2019-03-16 00:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 699..729 239..269 119 87.1 Plus

AT01668.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:53:03 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1640314..1640496 1..183 100 -> Plus
chr3R 1640586..1640930 184..528 100 -> Plus
chr3R 1643163..1643714 529..1080 100 -> Plus
chr3R 1643799..1643834 1081..1116 100 -> Plus
chr3R 1643896..1644467 1117..1688 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:48:19 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10999-RB 1..1152 475..1626 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:14:08 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RF 1..1152 475..1626 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:59:06 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 1..1152 475..1626 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:05:11 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10999-RB 1..1152 475..1626 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:16:06 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 1..1152 475..1626 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:37:08 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10999-RA 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:14:08 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:59:06 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:05:11 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
CG10999-RA 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:16:06 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 1..1688 1..1688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:53:03 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5814667..5814849 1..183 100 -> Plus
3R 5814939..5815283 184..528 100 -> Plus
3R 5817516..5818067 529..1080 100 -> Plus
3R 5818152..5818187 1081..1116 100 -> Plus
3R 5818249..5818820 1117..1688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:53:03 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5814667..5814849 1..183 100 -> Plus
3R 5814939..5815283 184..528 100 -> Plus
3R 5817516..5818067 529..1080 100 -> Plus
3R 5818152..5818187 1081..1116 100 -> Plus
3R 5818249..5818820 1117..1688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:53:03 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5814667..5814849 1..183 100 -> Plus
3R 5814939..5815283 184..528 100 -> Plus
3R 5817516..5818067 529..1080 100 -> Plus
3R 5818152..5818187 1081..1116 100 -> Plus
3R 5818249..5818820 1117..1688 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:59:06 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1640389..1640571 1..183 100 -> Plus
arm_3R 1640661..1641005 184..528 100 -> Plus
arm_3R 1643238..1643789 529..1080 100 -> Plus
arm_3R 1643874..1643909 1081..1116 100 -> Plus
arm_3R 1643971..1644542 1117..1688 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:36:58 Download gff for AT01668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5555770..5556114 184..528 100 -> Plus
3R 5558347..5558898 529..1080 100 -> Plus
3R 5558983..5559018 1081..1116 100 -> Plus
3R 5559080..5559651 1117..1688 100   Plus
3R 5555498..5555680 1..183 100 -> Plus

AT01668.hyp Sequence

Translation from 474 to 1625

> AT01668.hyp
MASQGSGDMKTSRLAQMQMRFQQRTQQEQEVRRRELMSTKSSAENLATGA
PSAATTRLIGNGKVRQMFDERRRGAGIDRSNPLKPIGTLPSPPAQTKSRP
QPPMQRLVKGVADLTMRDAPNAPGRRITSDSNNNKFATPRGTLNRNLKPV
VTRKTPPAQETTLHQRSPAPQRSPKIQATQRVSGGTGAAPTAGRLSPPFV
RRAEPKSPVKKVNMDTTTAIPEGTALCRYCGRHFNTDRLAKHEEVCQRML
TTKRKIFDASKQRIEGTEAAAFNMKSKGNRNRSTYSSAAQQKGLTTGVKK
NNWRKKHEDFIQSIRAAKQVKAHLARGGKLSDLPPPPPSENPDYVQCPHC
GRRFNEQAAERHIPKCVNMVHNKPRNGPPAKRR*

AT01668.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-PF 383 CG42675-PF 1..383 1..383 2005 100 Plus
CG42675-PC 383 CG10999-PB 1..383 1..383 2005 100 Plus
CG42675-PB 383 CG10999-PA 1..383 1..383 2005 100 Plus
CG42675-PE 412 CG42675-PE 35..412 6..383 1920 97.1 Plus
CG42675-PG 427 CG42675-PG 63..427 19..383 1918 100 Plus

AT01668.pep Sequence

Translation from 474 to 1625

> AT01668.pep
MASQGSGDMKTSRLAQMQMRFQQRTQQEQEVRRRELMSTKSSAENLATGA
PSAATTRLIGNGKVRQMFDERRRGAGIDRSNPLKPIGTLPSPPAQTKSRP
QPPMQRLVKGVADLTMRDAPNAPGRRITSDSNNNKFATPRGTLNRNLKPV
VTRKTPPAQETTLHQRSPAPQRSPKIQATQRVSGGTGAAPTAGRLSPPFV
RRAEPKSPVKKVNMDTTTAIPEGTALCRYCGRHFNTDRLAKHEEVCQRML
TTKRKIFDASKQRIEGTEAAAFNMKSKGNRNRSTYSSAAQQKGLTTGVKK
NNWRKKHEDFIQSIRAAKQVKAHLARGGKLSDLPPPPPSENPDYVQCPHC
GRRFNEQAAERHIPKCVNMVHNKPRNGPPAKRR*

AT01668.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16356-PA 389 GF16356-PA 1..388 1..383 1322 71 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13059-PA 382 GG13059-PA 1..382 1..383 1750 90.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13179-PA 380 GH13179-PA 1..373 1..379 1034 59.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-PF 383 CG42675-PF 1..383 1..383 2005 100 Plus
CG42675-PC 383 CG10999-PB 1..383 1..383 2005 100 Plus
CG42675-PB 383 CG10999-PA 1..383 1..383 2005 100 Plus
CG42675-PE 412 CG42675-PE 35..412 6..383 1920 97.1 Plus
CG42675-PG 427 CG42675-PG 63..427 19..383 1918 100 Plus
CG42675-PD 187 CG10999-PC 6..187 202..383 978 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22365-PA 424 GI22365-PA 1..417 1..379 955 54.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24325-PA 466 GL24325-PA 108..460 19..378 1042 63.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26574-PA 380 GA26574-PA 1..374 1..378 1127 62 Plus
Dpse\GA26574-PB 423 GA26574-PB 66..417 19..378 1086 63.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10844-PA 383 GM10844-PA 1..383 1..383 1896 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19826-PA 455 GD19826-PA 91..455 19..383 1821 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24399-PA 385 GJ24399-PA 1..374 1..375 1036 58.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22541-PA 461 GK22541-PA 93..456 19..379 922 58.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10169-PA 378 GE10169-PA 1..378 1..383 1719 87.8 Plus