Clone AT01712 Report

Search the DGRC for AT01712

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:17
Well:12
Vector:pOTB7
Associated Gene/TranscriptCG11125-RA
Protein status:AT01712.pep: gold
Preliminary Size:1218
Sequenced Size:1522

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11125 2004-02-02 Blastp of sequenced clone
CG11125 2008-04-29 Release 5.5 accounting
CG11125 2008-08-15 Release 5.9 accounting
CG11125 2008-12-18 5.12 accounting

Clone Sequence Records

AT01712.complete Sequence

1522 bp (1522 high quality bases) assembled on 2004-02-02

GenBank Submission: BT011568

> AT01712.complete
ACACAACGACGCAGTTTCCACTTGTCGTAGTCGAGATCACATTTCTGGAG
CCCCAGCCGTCTAGTTATAGTTCGGGAGTAGGTGGAACATGTCGAATACT
TCAGTTCGCCCGATTCCAACGTTAAAGGGCATCTTTTCGGTGCCGCGCGT
CACACAGTCCCGAAACTTCCTCAAGGAAAACAAGGTGAGCCTGCGCTCGC
TGGAAAAGTCCACCAGCCAGAAGTTGGCCGCTAAGGAGCCGACGCGCCCG
AAATGGATGCCCCCGCTGCGACGCTCTTCCTCCGTGATGGGAGACTCAAA
GGCGGAGAAACCAGCAGCTAAGGGCAAAACTATAAAACAGAACTCGTTGC
AAAATGGCCGCAGCACCTCTCGCTCACAGCACCAACTGGCCGTGGCCGTT
CCGGCGGAGGGGGAACGCTTCGATGGCCTGGAGGAGCGCAATCCCATCTT
ATATGACCCGTCGGAGAACTTAGAATCCGAGAATCTCCAAGAGCCTTCGT
CGGATACAGACATTGATCGCTGTCAATCGTGTGGCACGAATCGGAGCTCC
ACCAGCATAGCCATCCAAACTGAGGACATTACCGACGAACTCTATCTAAC
AAATGCTCTGAAGAAATGTAACTTTGATGCCAGATCTATACTGGAGGAAT
CCGGTGCAAAATACGGGGAAAACTACAAACCCATGCAATATGAAAACGAG
GAAGATTTGGAACAGTTGCCGCTTTCGGCGCGTTCGAACTCCTCGAAGCA
GAGTCGCTTCAACATGTCCGAAATGGAGGCTATGCCCATGACCGAGGCCG
AACCTGCAAACTACGGCGCCTCAGACGACGAGGCTCCACTCAGTGCCCGT
AGTCGTTTCACAACGGCCTCCAATGTCACCACCATAAGCTCTAAGTCAAA
GCGTCGTGAGCATAAACTAGGATCCCGAGATGAGGTGCGCTTGCCGCGTT
ACCTGGAAAAGCAGAAGCGCGAGAAGGCGGTGGCCAAGCAGCTTGCGGAA
TCGCTGGATCCCGACTGTCCGCGTGGCCATGTGTTGCTCAGCGATCAGGA
CCGACTGACGCACCTCACTAATGCTAAGAAACGCTACGAACAGCTGGTTA
ATGAACTGAACCACATGCCCATGACTGCACAGACGTTGAGGGTGCGCAAC
CGCAAGGCGGAGATCGACAAGGAGCTGACCACCGTGGAGGAGGACATCCG
CATATACTCCAAGGCAAAGGTCTTCGTGCTGGCCAGCAAGTCGCGACAGT
TGTGAGAACTCATGCTACATAGCTCCCAAAAACATTAAAGCATTCCATCG
ACTGACTGACCGAGCGAGCTACTGGAATCTTGGATTTGCAAAACACGCGT
GTTCCTTTCAACCATGCCTTACGTTAATAATATATTTTTTAGCTGAGATT
TGGATCGCAGACCTACCCCGCCCCGATAGCATTGTGACCAACTTAACGTG
CGATCCAGTCGACCAGCAACTAGAGTTACAGATTAAAAACCGCTCATCCA
ACTTAAAAAAAAAAAAAAAAAA

AT01712.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11125-RA 1691 CG11125-RA 175..1679 1..1505 7510 99.9 Plus
CG11125.a 1615 CG11125.a 88..1010 1..923 4600 99.8 Plus
CG11125-RB 1660 CG11125-RB 759..1648 616..1505 4450 100 Plus
CG11125-RB 1660 CG11125-RB 88..712 1..625 3065 99.3 Plus
CG11125.a 1615 CG11125.a 1035..1615 924..1504 2905 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3335141..3335619 147..625 2335 99.2 Plus
chr2R 21145070 chr2R 3336348..3336769 1083..1504 2110 100 Plus
chr2R 21145070 chr2R 3335666..3335973 616..923 1540 100 Plus
chr2R 21145070 chr2R 3336137..3336296 924..1083 800 100 Plus
chr2R 21145070 chr2R 3334920..3335066 1..147 735 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:37:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7447787..7448265 147..625 2335 99.2 Plus
2R 25286936 2R 7448994..7449416 1083..1505 2115 100 Plus
2R 25286936 2R 7448312..7448619 616..923 1540 100 Plus
2R 25286936 2R 7448783..7448942 924..1083 800 100 Plus
2R 25286936 2R 7447566..7447712 1..147 735 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7448986..7449464 147..625 2335 99.1 Plus
2R 25260384 2R 7450193..7450615 1083..1505 2115 100 Plus
2R 25260384 2R 7449511..7449818 616..923 1540 100 Plus
2R 25260384 2R 7449982..7450141 924..1083 800 100 Plus
2R 25260384 2R 7448765..7448911 1..147 735 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:50:48 has no hits.

AT01712.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:51:37 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3334920..3335065 1..146 100 -> Plus
chr2R 3335141..3335609 147..615 99 -> Plus
chr2R 3335666..3335973 616..923 100 -> Plus
chr2R 3336137..3336295 924..1082 100 -> Plus
chr2R 3336348..3336769 1083..1504 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:48:25 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
CG11125-RA 1..1167 89..1255 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:40:13 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
CG11125-RA 1..1167 89..1255 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:48:45 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
CG11125-RA 1..1167 89..1255 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:29:04 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
CG11125-RA 1..1167 89..1255 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:52 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
CG11125-RA 1..1167 89..1255 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:49:07 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
CG11125-RA 88..1591 1..1504 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:40:13 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
CG11125-RA 88..1586 1..1499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:48:45 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
CG11125-RA 94..1597 1..1504 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:29:06 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
CG11125-RA 88..1591 1..1504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:52 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
CG11125-RA 94..1597 1..1504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:37 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7447566..7447711 1..146 100 -> Plus
2R 7447787..7448255 147..615 99 -> Plus
2R 7448312..7448619 616..923 100 -> Plus
2R 7448783..7448941 924..1082 100 -> Plus
2R 7448994..7449415 1083..1504 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:37 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7447566..7447711 1..146 100 -> Plus
2R 7447787..7448255 147..615 99 -> Plus
2R 7448312..7448619 616..923 100 -> Plus
2R 7448783..7448941 924..1082 100 -> Plus
2R 7448994..7449415 1083..1504 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:37 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7447566..7447711 1..146 100 -> Plus
2R 7447787..7448255 147..615 99 -> Plus
2R 7448312..7448619 616..923 100 -> Plus
2R 7448783..7448941 924..1082 100 -> Plus
2R 7448994..7449415 1083..1504 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:48:45 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3335071..3335216 1..146 100 -> Plus
arm_2R 3335292..3335760 147..615 99 -> Plus
arm_2R 3335817..3336124 616..923 100 -> Plus
arm_2R 3336288..3336446 924..1082 100 -> Plus
arm_2R 3336499..3336920 1083..1504 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:01:26 Download gff for AT01712.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7448986..7449454 147..615 99 -> Plus
2R 7449511..7449818 616..923 100 -> Plus
2R 7449982..7450140 924..1082 100 -> Plus
2R 7450193..7450614 1083..1504 100   Plus
2R 7448765..7448910 1..146 100 -> Plus

AT01712.hyp Sequence

Translation from 88 to 1254

> AT01712.hyp
MSNTSVRPIPTLKGIFSVPRVTQSRNFLKENKVSLRSLEKSTSQKLAAKE
PTRPKWMPPLRRSSSVMGDSKAEKPAAKGKTIKQNSLQNGRSTSRSQHQL
AVAVPAEGERFDGLEERNPILYDPSENLESENLQEPSSDTDIDRCQSCGT
NRSSTSIAIQTEDITDELYLTNALKKCNFDARSILEESGAKYGENYKPMQ
YENEEDLEQLPLSARSNSSKQSRFNMSEMEAMPMTEAEPANYGASDDEAP
LSARSRFTTASNVTTISSKSKRREHKLGSRDEVRLPRYLEKQKREKAVAK
QLAESLDPDCPRGHVLLSDQDRLTHLTNAKKRYEQLVNELNHMPMTAQTL
RVRNRKAEIDKELTTVEEDIRIYSKAKVFVLASKSRQL*

AT01712.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11125-PC 388 CG11125-PC 1..388 1..388 1959 100 Plus
CG11125-PA 388 CG11125-PA 1..388 1..388 1959 100 Plus
CG32591-PB 392 CG32591-PB 12..383 25..375 174 23.8 Plus
CG32591-PA 392 CG32591-PA 12..383 25..375 174 23.8 Plus

AT01712.pep Sequence

Translation from 88 to 1254

> AT01712.pep
MSNTSVRPIPTLKGIFSVPRVTQSRNFLKENKVSLRSLEKSTSQKLAAKE
PTRPKWMPPLRRSSSVMGDSKAEKPAAKGKTIKQNSLQNGRSTSRSQHQL
AVAVPAEGERFDGLEERNPILYDPSENLESENLQEPSSDTDIDRCQSCGT
NRSSTSIAIQTEDITDELYLTNALKKCNFDARSILEESGAKYGENYKPMQ
YENEEDLEQLPLSARSNSSKQSRFNMSEMEAMPMTEAEPANYGASDDEAP
LSARSRFTTASNVTTISSKSKRREHKLGSRDEVRLPRYLEKQKREKAVAK
QLAESLDPDCPRGHVLLSDQDRLTHLTNAKKRYEQLVNELNHMPMTAQTL
RVRNRKAEIDKELTTVEEDIRIYSKAKVFVLASKSRQL*

AT01712.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12958-PA 391 GF12958-PA 1..391 1..388 1406 69.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23280-PA 388 GG23280-PA 1..388 1..388 1843 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21167-PA 382 GH21167-PA 1..382 1..388 998 55.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11125-PC 388 CG11125-PC 1..388 1..388 1959 100 Plus
CG11125-PA 388 CG11125-PA 1..388 1..388 1959 100 Plus
CG32591-PB 392 CG32591-PB 12..383 25..375 174 23.8 Plus
CG32591-PA 392 CG32591-PA 12..383 25..375 174 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18762-PA 405 GI18762-PA 1..405 1..388 963 52.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10503-PA 380 GL10503-PA 1..378 1..384 1234 63.6 Plus
Dper\GL22969-PA 356 GL22969-PA 1..354 1..384 857 49.4 Plus
Dper\GL14354-PA 315 GL14354-PA 1..309 1..361 638 44.3 Plus
Dper\GL14160-PA 313 GL14160-PA 1..311 1..384 636 41.7 Plus
Dper\GL25476-PA 98 GL25476-PA 11..96 290..384 257 53.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10774-PA 382 GA10774-PA 1..380 1..384 1220 63.8 Plus
Dpse\GA22281-PA 356 GA22281-PA 1..354 1..384 854 49.7 Plus
Dpse\GA22381-PA 345 GA22381-PA 1..343 12..384 833 49.3 Plus
Dpse\GA22989-PA 317 GA22989-PA 1..311 1..361 609 43.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20956-PA 388 GM20956-PA 1..388 1..388 1969 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10481-PA 388 GD10481-PA 1..388 1..388 1975 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21786-PA 387 GJ21786-PA 1..387 1..388 1005 55.5 Plus
Dvir\GJ16940-PA 376 GJ16940-PA 107..363 159..380 151 22.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21321-PA 357 GK21321-PA 1..357 1..388 976 53.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19127-PA 390 GE19127-PA 1..390 1..388 1842 91.8 Plus