Clone AT01806 Report

Search the DGRC for AT01806

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:18
Well:6
Vector:pOTB7
Associated Gene/TranscriptCG5662-RA
Protein status:AT01806.pep: gold
Preliminary Size:879
Sequenced Size:974

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5662 2002-01-01 Sim4 clustering to Release 2
CG5662 2002-02-22 Blastp of sequenced clone
CG5662 2003-01-01 Sim4 clustering to Release 3
CG5662 2008-04-29 Release 5.5 accounting
CG5662 2008-08-15 Release 5.9 accounting
CG5662 2008-12-18 5.12 accounting

Clone Sequence Records

AT01806.complete Sequence

974 bp (974 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089216

> AT01806.complete
GAAACCCACAGTCAAAATTTTCGGCACTTTAAGCATGGAGTTGGAACAAA
ACTTGACCGCCGCCCTGATGCAGTCGTCGGCGGAGGAGGGCAAGTCGGAG
GAGGCGTGGCCGGCGGACGCCCACCTGCATCAGCCGGCCGAGGCGAATCA
GCTCCTGCTGCCGGAGCGCTCCAGCTGCCTGGCGGTGAAGACGTTTTTGC
GCATGTGCAACCTACCATTTACGGAGCACATCAGCGACAATGCAGAGTTT
ATGTCACCAGGTGGCCGGTTGACCCACCTGCCGCTGCTCCGTTTGGGCCC
TGTCAAGACTTTTGCGGAATTCGAGCCAATAGTGGCCCAAGTGGAGGCCG
TGCAAGGCGGCAATTGCCTGGACAGTTGGATGTCCGAGGATCAGCGCGAT
AACATCCGCTGTCTGGTTAGCTATGTGGAGAATGTCTTCACCCTGGCGGA
GATTCACATGAGTTTTGTGGATGAGGTAAACTATCAACTTTACACGGCAA
CGCGCTGTGCAGCCGCTCATCCGTGGCCGTTGAGTACGATTCGCCGGTTT
GCCAAGCAGAAGGACGCACAGAAGATACTGAAGGTCTACCGGTGGCAGGA
TTTGGACAACGACCAGGTAATCCAGGAGGTGAGCATCTGTGCCGATGCGT
TGATCGCTGAACTGGAGGAGGACCAGGCGAAGAGCTATTTCGGCGGCTCA
CGACCTTGCAAATTGGACGCCCTGGTCTTTGGCCATGTGGTAGCCATAAT
GACCACCAAGCTTCCCAACATGGAACTGGCCGCGGTTCTGGCCACATATC
CACGTCTATTGGCCCACTGTCGCCGCATCGATCAGAGCCTGTTTGATGGC
AAACTCCTGACCAGCGCGGTGGAGGAGCAGGAGGACGAGATGGAGTTGGA
AAAAATAGAATAAAGGAAAGGGCAGGACTCGGAATCCCTCTGCCCCGGAA
CAAAGGAAAAAAAAAAAAAAAAAA

AT01806.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5662-RA 983 CG5662-RA 25..981 1..957 4755 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15100530..15101485 1..956 4735 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:37:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15210422..15211378 1..957 4755 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15218520..15219476 1..957 4755 99.7 Plus
Blast to na_te.dros performed on 2019-03-15 21:28:03 has no hits.

AT01806.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:28:52 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15100530..15101485 1..956 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:48:33 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 1..879 35..913 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:44:12 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 1..879 35..913 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:48:54 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 1..879 35..913 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:12:19 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 1..879 35..913 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:18 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 1..879 35..913 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:46 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 25..980 1..956 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:44:12 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 25..980 1..956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:48:54 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 25..980 1..956 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:12:19 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 25..980 1..956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:18 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
CG5662-RA 37..992 1..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:52 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
X 15210422..15211377 1..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:52 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
X 15210422..15211377 1..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:52 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
X 15210422..15211377 1..956 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:48:54 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15104455..15105410 1..956 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:53 Download gff for AT01806.complete
Subject Subject Range Query Range Percent Splice Strand
X 15218520..15219475 1..956 99   Plus

AT01806.hyp Sequence

Translation from 1 to 912

> AT01806.hyp
KPTVKIFGTLSMELEQNLTAALMQSSAEEGKSEEAWPADAHLHQPAEANQ
LLLPERSSCLAVKTFLRMCNLPFTEHISDNAEFMSPGGRLTHLPLLRLGP
VKTFAEFEPIVAQVEAVQGGNCLDSWMSEDQRDNIRCLVSYVENVFTLAE
IHMSFVDEVNYQLYTATRCAAAHPWPLSTIRRFAKQKDAQKILKVYRWQD
LDNDQVIQEVSICADALIAELEEDQAKSYFGGSRPCKLDALVFGHVVAIM
TTKLPNMELAAVLATYPRLLAHCRRIDQSLFDGKLLTSAVEEQEDEMELE
KIE*

AT01806.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5662-PB 292 CG5662-PB 1..292 12..303 1512 100 Plus
CG5662-PA 292 CG5662-PA 1..292 12..303 1512 100 Plus
CG8004-PA 269 CG8004-PA 6..267 22..286 622 46.8 Plus

AT01806.pep Sequence

Translation from 34 to 912

> AT01806.pep
MELEQNLTAALMQSSAEEGKSEEAWPADAHLHQPAEANQLLLPERSSCLA
VKTFLRMCNLPFTEHISDNAEFMSPGGRLTHLPLLRLGPVKTFAEFEPIV
AQVEAVQGGNCLDSWMSEDQRDNIRCLVSYVENVFTLAEIHMSFVDEVNY
QLYTATRCAAAHPWPLSTIRRFAKQKDAQKILKVYRWQDLDNDQVIQEVS
ICADALIAELEEDQAKSYFGGSRPCKLDALVFGHVVAIMTTKLPNMELAA
VLATYPRLLAHCRRIDQSLFDGKLLTSAVEEQEDEMELEKIE*

AT01806.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21225-PA 297 GF21225-PA 12..272 17..276 887 64 Plus
Dana\GF10837-PA 269 GF10837-PA 6..267 11..275 648 47.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17868-PA 287 GG17868-PA 1..277 1..277 1301 85.9 Plus
Dere\GG13360-PA 269 GG13360-PA 6..269 11..277 641 46.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14498-PA 270 GH14498-PA 17..268 21..275 656 48.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5662-PB 292 CG5662-PB 1..292 1..292 1512 100 Plus
CG5662-PA 292 CG5662-PA 1..292 1..292 1512 100 Plus
CG8004-PA 269 CG8004-PA 6..267 11..275 622 46.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13657-PA 270 GI13657-PA 7..268 11..275 665 48.3 Plus
Dmoj\GI21548-PA 123 GI21548-PA 59..119 215..275 148 45.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22904-PA 268 GL22904-PA 6..267 11..275 626 45.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23333-PA 268 GA23333-PA 6..267 11..275 627 45.3 Plus
Dpse\GA23925-PA 111 GA23925-PA 1..110 166..275 247 39.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12065-PA 235 GM12065-PA 1..226 1..226 1140 92.5 Plus
Dsec\GM15407-PA 269 GM15407-PA 6..267 11..275 645 46.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17197-PA 287 GD17197-PA 1..287 1..287 1441 93.4 Plus
Dsim\GD12238-PA 269 GD12238-PA 6..267 11..275 642 46.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15694-PA 292 GJ15694-PA 32..290 25..277 691 50 Plus
Dvir\GJ13992-PA 270 GJ13992-PA 7..268 11..275 655 47.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17494-PA 271 GK17494-PA 6..265 11..273 637 47.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17171-PA 287 GE17171-PA 1..279 1..279 1313 86.4 Plus
Dyak\GE22453-PA 269 GE22453-PA 6..267 11..275 640 46 Plus