Clone AT01878 Report

Search the DGRC for AT01878

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:18
Well:78
Vector:pOTB7
Associated Gene/TranscriptCG13471-RA
Protein status:AT01878.pep: gold
Preliminary Size:801
Sequenced Size:944

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13471 2002-01-01 Sim4 clustering to Release 2
CG13471 2002-02-22 Blastp of sequenced clone
CG13471 2003-01-01 Sim4 clustering to Release 3
CG13471 2008-04-29 Release 5.5 accounting
CG13471 2008-08-15 Release 5.9 accounting
CG13471 2008-12-18 5.12 accounting

Clone Sequence Records

AT01878.complete Sequence

944 bp (944 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089223

> AT01878.complete
CGGAACTTTCTGGAATCAGTCATTTTATTTTTTGTTGACCCACCTGGCCT
TTTTTATCGATTATTAAGATGTCATCATCCGAAACCGAATGGTTTGCAGA
GGTAGAGTTGGACAGTGAGGAGTCTGAGGAAGAACGCACTCTATCGTTCG
CTTCGGGTGACCTAAATGCCAATGAAATTCTGGGAAGTACATCGGATTCA
GATACGGATACGGATTCGTTATCGCTATCGTTATCAACCACCACGGTGGA
TGGCAGTCAATCATCAGGATCCGAAGTATCCAACCATGATCTCGATACCG
GACTTTTCGGCTTGCGACCTGTGCAAGGTACCACCAACTTGATACCCCAT
GCCACCATTACGTCCACACCATCAGCATCACAATCACCTCCATTACCAAT
ATGGCAAGTAATAAGGAGACGATTGAGCTCCGATCCGGAAGTGATCAACC
GTCCTTATGGCCGATTCCAGCCAGAGAACTTCACTCTTATCGAACCTATG
GGTCCCCTCTCCCCTAGCGAGAGACAGGAAATGACTCGACTGATCACGGA
ATTCATGGAGGATCTAGAAAATTCTCGCCCCTCGCCCGAAGAAGTTCAAA
GACGCCGTAATCGCATGCGGGCAGATGGCATAGCTCGAGCTCATGCCCGA
CTTCATGCTCGAAGGATGAGAGCCGCATCCTTACACCGAGCTGCTTTGAG
TAATGCTGAGCAATCGAATTTGGCTCAAATCGCTCAAGATCTGCCGCGGG
CAAATAGTGTTAGCGATTGCAGCCAGTGCAGCAGTGATGAGGAACAGGAT
CAAATCGATGGCAAGAATAGAAAGCCTACTGTTCCAAGTCATCTCTCCGA
ATGGTTGTATCCCATTTAAGCTGTAAAATGTGTTATATTAAATTAAGAGT
CATTGTTCTGTCGGACTCACAAAAAAAAAAAAAAAAAAAAAAAA

AT01878.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13471-RA 930 CG13471-RA 1..925 1..925 4565 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14722736..14723655 920..1 4555 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:37:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14732593..14733517 925..1 4565 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14725693..14726617 925..1 4565 99.5 Minus
Blast to na_te.dros performed on 2019-03-15 23:37:35 has no hits.

AT01878.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:38:52 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14722736..14723655 1..920 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:48:45 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
CG13471-RA 1..801 69..869 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:44:00 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
CG13471-RA 1..801 69..869 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:43:49 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
CG13471-RA 1..801 69..869 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:12:12 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
CG13471-RA 1..801 69..869 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:42 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
CG13471-RA 1..801 69..869 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:33 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
CG13471-RA 1..920 1..920 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:59 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
CG13471-RA 1..920 1..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:43:49 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
CG13471-RA 1..920 1..920 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:12:13 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
CG13471-RA 1..920 1..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:42 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
CG13471-RA 1..920 1..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:38:52 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14732598..14733517 1..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:38:52 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14732598..14733517 1..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:38:52 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14732598..14733517 1..920 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:49 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14725698..14726617 1..920 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:46 Download gff for AT01878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14725698..14726617 1..920 99   Minus

AT01878.pep Sequence

Translation from 68 to 868

> AT01878.pep
MSSSETEWFAEVELDSEESEEERTLSFASGDLNANEILGSTSDSDTDTDS
LSLSLSTTTVDGSQSSGSEVSNHDLDTGLFGLRPVQGTTNLIPHATITST
PSASQSPPLPIWQVIRRRLSSDPEVINRPYGRFQPENFTLIEPMGPLSPS
ERQEMTRLITEFMEDLENSRPSPEEVQRRRNRMRADGIARAHARLHARRM
RAASLHRAALSNAEQSNLAQIAQDLPRANSVSDCSQCSSDEEQDQIDGKN
RKPTVPSHLSEWLYPI*

AT01878.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13714-PA 254 GG13714-PA 22..254 25..266 460 49.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13471-PA 266 CG13471-PA 1..266 1..266 1358 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24535-PA 262 GM24535-PA 2..262 4..266 792 72.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12607-PA 265 GD12607-PA 2..265 4..266 780 72.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20008-PA 264 GE20008-PA 1..264 1..266 532 53.3 Plus

AT01878.hyp Sequence

Translation from 68 to 868

> AT01878.hyp
MSSSETEWFAEVELDSEESEEERTLSFASGDLNANEILGSTSDSDTDTDS
LSLSLSTTTVDGSQSSGSEVSNHDLDTGLFGLRPVQGTTNLIPHATITST
PSASQSPPLPIWQVIRRRLSSDPEVINRPYGRFQPENFTLIEPMGPLSPS
ERQEMTRLITEFMEDLENSRPSPEEVQRRRNRMRADGIARAHARLHARRM
RAASLHRAALSNAEQSNLAQIAQDLPRANSVSDCSQCSSDEEQDQIDGKN
RKPTVPSHLSEWLYPI*

AT01878.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13471-PA 266 CG13471-PA 1..266 1..266 1358 100 Plus