Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT01878.complete Sequence
944 bp (944 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089223
> AT01878.complete
CGGAACTTTCTGGAATCAGTCATTTTATTTTTTGTTGACCCACCTGGCCT
TTTTTATCGATTATTAAGATGTCATCATCCGAAACCGAATGGTTTGCAGA
GGTAGAGTTGGACAGTGAGGAGTCTGAGGAAGAACGCACTCTATCGTTCG
CTTCGGGTGACCTAAATGCCAATGAAATTCTGGGAAGTACATCGGATTCA
GATACGGATACGGATTCGTTATCGCTATCGTTATCAACCACCACGGTGGA
TGGCAGTCAATCATCAGGATCCGAAGTATCCAACCATGATCTCGATACCG
GACTTTTCGGCTTGCGACCTGTGCAAGGTACCACCAACTTGATACCCCAT
GCCACCATTACGTCCACACCATCAGCATCACAATCACCTCCATTACCAAT
ATGGCAAGTAATAAGGAGACGATTGAGCTCCGATCCGGAAGTGATCAACC
GTCCTTATGGCCGATTCCAGCCAGAGAACTTCACTCTTATCGAACCTATG
GGTCCCCTCTCCCCTAGCGAGAGACAGGAAATGACTCGACTGATCACGGA
ATTCATGGAGGATCTAGAAAATTCTCGCCCCTCGCCCGAAGAAGTTCAAA
GACGCCGTAATCGCATGCGGGCAGATGGCATAGCTCGAGCTCATGCCCGA
CTTCATGCTCGAAGGATGAGAGCCGCATCCTTACACCGAGCTGCTTTGAG
TAATGCTGAGCAATCGAATTTGGCTCAAATCGCTCAAGATCTGCCGCGGG
CAAATAGTGTTAGCGATTGCAGCCAGTGCAGCAGTGATGAGGAACAGGAT
CAAATCGATGGCAAGAATAGAAAGCCTACTGTTCCAAGTCATCTCTCCGA
ATGGTTGTATCCCATTTAAGCTGTAAAATGTGTTATATTAAATTAAGAGT
CATTGTTCTGTCGGACTCACAAAAAAAAAAAAAAAAAAAAAAAA
AT01878.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13471-RA | 930 | CG13471-RA | 1..925 | 1..925 | 4565 | 99.5 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 14722736..14723655 | 920..1 | 4555 | 99.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:37:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14732593..14733517 | 925..1 | 4565 | 99.6 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 14725693..14726617 | 925..1 | 4565 | 99.5 | Minus |
Blast to na_te.dros performed on 2019-03-15 23:37:35 has no hits.
AT01878.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:38:52 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 14722736..14723655 | 1..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:48:45 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13471-RA | 1..801 | 69..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:44:00 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13471-RA | 1..801 | 69..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:43:49 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13471-RA | 1..801 | 69..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:12:12 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13471-RA | 1..801 | 69..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:42 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13471-RA | 1..801 | 69..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:33 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13471-RA | 1..920 | 1..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:59 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13471-RA | 1..920 | 1..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:43:49 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13471-RA | 1..920 | 1..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:12:13 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13471-RA | 1..920 | 1..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:42 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13471-RA | 1..920 | 1..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:38:52 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14732598..14733517 | 1..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:38:52 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14732598..14733517 | 1..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:38:52 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14732598..14733517 | 1..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:49 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14725698..14726617 | 1..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:46 Download gff for
AT01878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14725698..14726617 | 1..920 | 99 | | Minus |
AT01878.pep Sequence
Translation from 68 to 868
> AT01878.pep
MSSSETEWFAEVELDSEESEEERTLSFASGDLNANEILGSTSDSDTDTDS
LSLSLSTTTVDGSQSSGSEVSNHDLDTGLFGLRPVQGTTNLIPHATITST
PSASQSPPLPIWQVIRRRLSSDPEVINRPYGRFQPENFTLIEPMGPLSPS
ERQEMTRLITEFMEDLENSRPSPEEVQRRRNRMRADGIARAHARLHARRM
RAASLHRAALSNAEQSNLAQIAQDLPRANSVSDCSQCSSDEEQDQIDGKN
RKPTVPSHLSEWLYPI*
AT01878.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13714-PA | 254 | GG13714-PA | 22..254 | 25..266 | 460 | 49.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13471-PA | 266 | CG13471-PA | 1..266 | 1..266 | 1358 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24535-PA | 262 | GM24535-PA | 2..262 | 4..266 | 792 | 72.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD12607-PA | 265 | GD12607-PA | 2..265 | 4..266 | 780 | 72.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE20008-PA | 264 | GE20008-PA | 1..264 | 1..266 | 532 | 53.3 | Plus |
AT01878.hyp Sequence
Translation from 68 to 868
> AT01878.hyp
MSSSETEWFAEVELDSEESEEERTLSFASGDLNANEILGSTSDSDTDTDS
LSLSLSTTTVDGSQSSGSEVSNHDLDTGLFGLRPVQGTTNLIPHATITST
PSASQSPPLPIWQVIRRRLSSDPEVINRPYGRFQPENFTLIEPMGPLSPS
ERQEMTRLITEFMEDLENSRPSPEEVQRRRNRMRADGIARAHARLHARRM
RAASLHRAALSNAEQSNLAQIAQDLPRANSVSDCSQCSSDEEQDQIDGKN
RKPTVPSHLSEWLYPI*
AT01878.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13471-PA | 266 | CG13471-PA | 1..266 | 1..266 | 1358 | 100 | Plus |