Clone AT02187 Report

Search the DGRC for AT02187

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:21
Well:87
Vector:pOTB7
Associated Gene/TranscriptCG33199-RA
Protein status:AT02187.pep: gold
Sequenced Size:1078

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33981 2009-01-20 Manual selection by Sue Celniker
CG33199 2009-01-20 Manual selection by Sue Celniker

Clone Sequence Records

AT02187.complete Sequence

1078 bp assembled on 2009-03-10

GenBank Submission: BT072835.1

> AT02187.complete
CACATGAGTTCTAGATCGTTTAGTTTTCTTGGTTTTCATTTGCTCGCCAA
ATTTTAGCAACGTTGCTGGTTTAATCGGCTGCACCTGCAATCGCGGTTAA
TCAGAGAGCGCCGAGCACTAAAGTTCCCATTGCCAAACGAAACGTCCCGA
TTTGCTCGATTTGGAACTGGAACGGACCATGAAAACAAGCAATCTCGGCC
TGTACGCTTTCCGTTTAACCTTCGGTCAGGCGCCGACGTTGTCCACACAG
GCCACGACGCACTGCAGCCATGGCTTCACCACCAGCTCGTCGTCGCCCAA
CCGTGTGGTGACCCGCTCTGCCACCATGCTGGCGCTCTTCGGCATCGCGC
TGTCCTCGTTCAGCCTTAAGCAACTGCTGGCCAAGAAGCAGAAGCACCAG
GGCCTGCGCAAGCTCTAGAATGGAGCTATAGCCAGAAAGATTAGAGCGAT
GCCAACGCCAACGGTTGAAGCGGCGATGAGGAGCCAGAGCGCCATGTCCT
GAGGTCACACATTCGATATTTTCATCATCCGCCATCATCGTGTATATTTG
CCTAAGTTAAGTCACCCACTCACCACAGACCCAAGCGGAACTCGGACATG
GAGGCTTGTTTTGTAATATTCTGTTCGATAAACTAACTGATCGGAGGCGA
GGATCTGTGCGCATATATAGATATATTTTCTTGTTTACACATGCACACCA
TGCGTCGCCAACTAAAAGGAATAAATTTGTGATAAATCGTGTATGAAAAA
AGCCCATCGGCAGACAAACTGAACGAAGGAGCGATGGAGGAGAAGATTCG
CTGAGCTTGCGGGAATCCCAAATTTTCCTATACTCTTTTGTTGCCCGTTT
TAGTAATATTTATTTTATGTGTAAACAAGTCTATTATATACGTATATTTA
TTTACAAGTTATTTGCAAACCAGAGAAACGACTAAGTAGGGAGGTATAAA
ACAATAATGACTTCGTTGGACTGCAGATCGCCGAGCAGGCTGTGTCAGTA
TCCAAGAAACAAACTAGTTCTAGTTCCGTATTCAAATAAATGCATTATAT
TCAATTCGAAAAAAAAAAAAAAAAAAAA

AT02187.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-RE 2066 CG8229-RE 1167..2001 228..1062 4175 100 Plus
CG33199-RA 789 CG33199-RA 52..789 1..738 3690 100 Plus
CG8229-RE 2066 CG8229-RE 80..309 1..230 1150 100 Plus
CG8229-RD 1537 CG8229-RD 80..309 1..230 1150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4835687..4836518 1058..227 4160 100 Minus
chr2R 21145070 chr2R 4838486..4838630 145..1 725 100 Minus
chr2R 21145070 chr2R 4838282..4838368 230..144 435 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:37:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8948109..8948944 1062..227 4180 100 Minus
2R 25286936 2R 8950909..8951053 145..1 725 100 Minus
2R 25286936 2R 8950705..8950791 230..144 435 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8949308..8950143 1062..227 4180 100 Minus
2R 25260384 2R 8952108..8952252 145..1 725 100 Minus
2R 25260384 2R 8951904..8951990 230..144 435 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:20:13 has no hits.

AT02187.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:20:59 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4835687..4836515 230..1058 100 <- Minus
chr2R 4838283..4838368 144..229 100 <- Minus
chr2R 4838488..4838630 1..143 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:52:03 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
CG33199-RA 1..240 179..418 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:39:16 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
CG33199-RA 1..240 179..418 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:36 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
CG33199-RA 1..240 179..418 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:46 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
CG33199-RA 1..240 179..418 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-10 11:11:15 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 52..280 1..229 100 -> Plus
CG8229-RE 1141..1969 230..1058 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:39:16 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 1141..1969 230..1058 100   Plus
CG8229-RE 52..280 1..229 100 -> Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:36 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
CG33199-RA 34..1091 1..1058 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:46 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
CG33199-RA 34..1091 1..1058 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:59 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8948113..8948941 230..1058 100 <- Minus
2R 8950706..8950791 144..229 100 <- Minus
2R 8950911..8951053 1..143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:59 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8948113..8948941 230..1058 100 <- Minus
2R 8950706..8950791 144..229 100 <- Minus
2R 8950911..8951053 1..143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:59 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8948113..8948941 230..1058 100 <- Minus
2R 8950706..8950791 144..229 100 <- Minus
2R 8950911..8951053 1..143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:36 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4835618..4836446 230..1058 100 <- Minus
arm_2R 4838211..4838296 144..229 100 <- Minus
arm_2R 4838416..4838558 1..143 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:13:18 Download gff for AT02187.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8949312..8950140 230..1058 100 <- Minus
2R 8951905..8951990 144..229 100 <- Minus
2R 8952110..8952252 1..143 100   Minus

AT02187.hyp Sequence

Translation from 178 to 417

> AT02187.hyp
MKTSNLGLYAFRLTFGQAPTLSTQATTHCSHGFTTSSSSPNRVVTRSATM
LALFGIALSSFSLKQLLAKKQKHQGLRKL*

AT02187.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33199-PB 79 CG33199-PB 1..79 1..79 393 100 Plus
CG33199-PA 79 CG33199-PA 1..79 1..79 393 100 Plus

AT02187.pep Sequence

Translation from 178 to 417

> AT02187.pep
MKTSNLGLYAFRLTFGQAPTLSTQATTHCSHGFTTSSSSPNRVVTRSATM
LALFGIALSSFSLKQLLAKKQKHQGLRKL*

AT02187.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10603-PA 79 GG10603-PA 1..79 1..79 385 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20268-PA 81 GH20268-PA 1..81 1..79 296 77.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG33199-PB 79 CG33199-PB 1..79 1..79 393 100 Plus
CG33199-PA 79 CG33199-PA 1..79 1..79 393 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19437-PA 80 GI19437-PA 1..80 1..79 315 81.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11091-PA 72 GL11091-PA 10..72 18..79 240 82.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24609-PA 71 GA24609-PA 3..71 12..79 254 79.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20648-PA 79 GM20648-PA 1..79 1..79 386 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10122-PA 79 GD10122-PA 1..79 1..79 395 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21189-PA 80 GJ21189-PA 1..80 1..79 334 86.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17819-PA 69 GK17819-PA 1..69 1..79 256 74.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22689-PA 206 GE22689-PA 145..206 18..79 297 95.2 Plus