Clone AT02196 Report

Search the DGRC for AT02196

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:21
Well:96
Vector:pOTB7
Associated Gene/TranscriptCG12093-RA
Protein status:AT02196.pep: gold
Preliminary Size:1290
Sequenced Size:1296

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12093 2003-01-01 Sim4 clustering to Release 3
CG12093 2004-01-09 Blastp of sequenced clone
CG12093 2008-04-29 Release 5.5 accounting
CG12093 2008-08-15 Release 5.9 accounting
CG12093 2008-12-18 5.12 accounting

Clone Sequence Records

AT02196.complete Sequence

1296 bp (1296 high quality bases) assembled on 2004-01-09

GenBank Submission: BT011424

> AT02196.complete
CAGCTCCACAGCTGTTTTGCCAAGTTCTTAATTATATTTTTGTTTGCTTA
TTTTGCGCTTTTGTTTTTCTTTTGCTTGCAATTATTATGTTTATTTGGCA
TTACTTGACCCTCTTGTGCCTTGGGTTCGCCCTCATCGATGCGAAATCCA
TCAAGAAGTCGCAGGCCAATCTGTTGGAGCCAACTCTTGATCCTGATGAG
AAGCTAGGGAAGATTGGGAAGTCCCCACCCGACATTTCCAATGATGTGCA
ACGTGTGCAGGTTCCATTAGGTGCGACGCCCGGCAAGAATGGCTGGCAGG
GCAAGTGGTTTCCCCATGCCCCTGGACAACAGCAGGAAGCGATTGAATTA
AAAATGAAGAGCACCACGGAGGAAGTTCCTCCGCTGGAGTTCACAACCAA
GGATGGCTGGCAGGGCAAGTGGTTTCCACAAGCTCCCGGAGAGCCGCACT
TGGTGAAGAAAAAACCGCTGGTCGATAACAAAACCAAGTCGGGGAAGTCC
ACCACACAGGATACTTGGCAGGGTAAATTGTTTCCGCAGGGTCCCAATGA
ATCGCACAAGACTAAACAAAGCAGCTGTGATGATGGCAAGAGCAATCTTG
CCGTGGACTTCGATCCAAACGACATCCGTGACAGCCTGAATTTCCTATGC
ATCAGTAGTAATCACAGCTTGTACCAACCGGATTTGTCCAGAGAAGCCAT
TCTTACGGAGCACTTTCTACCTAGCGCCTATCTGCCGCCTGCCAAGTGCC
TTAATGAGTCCATTAGCTACTCCCATCTGCCTGCCACCAATGGCCCCTAT
CGCCCGATGCCCGCTGAATATGGCACCTATTCCTACTTGCCTCCTCAGCG
ATACGTGCGTAATCTGGCGGAAGGTGCCATCGTAATGCTCTACCATCCCT
GCGCTTTTCCCGGCCAAGTGAAGCAGCTGCAAGACATCGTGGGTGGCTGT
CTGTATCGCCATCTGGTGTCACCCTCGCTGGCTCTGAGTCCGCAGCGACC
GCTGGCCCTGCTCGCCTGGAGTCGCAGCCTCGAGATGTCCGTCGTGGATC
GACAACTGGCGGCGGACTTCATCCAGAAACACGCCAAGCAAGGACCACTT
GCACCGGAGGAATTGTCGCGTTTGATTGTCAAGAGACAGACCTACAAGGA
GGGCCTTCTTAGGGAAGCGCACTTGGTCAACACGGCGGACGACTACGAGC
TGTGCGGCTACCTACAGGAGGATATGTAGGCCAAATGTGTTAACTATTTG
TTTTTAATAAACCTCGAATACTTTGCCAAAAAAAAAAAAAAAAAAA

AT02196.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12093-RA 1407 CG12093-RA 33..1311 1..1279 6395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2772836..2773425 590..1 2890 99.3 Minus
chr3L 24539361 chr3L 2771997..2772483 1277..791 2405 99.6 Minus
chr3L 24539361 chr3L 2772542..2772743 790..589 1010 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:37:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2773399..2773988 590..1 2950 100 Minus
3L 28110227 3L 2772558..2773046 1279..791 2445 100 Minus
3L 28110227 3L 2773105..2773306 790..589 1010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2773399..2773988 590..1 2950 100 Minus
3L 28103327 3L 2772558..2773046 1279..791 2445 100 Minus
3L 28103327 3L 2773105..2773306 790..589 1010 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:14:25 has no hits.

AT02196.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:15:31 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2771997..2772483 791..1277 99 <- Minus
chr3L 2772542..2772741 591..790 100 <- Minus
chr3L 2772836..2773329 97..590 99 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:49:09 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
CG12093-RA 1..1143 87..1229 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:43:47 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
CG12093-RA 1..1143 87..1229 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:08:21 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
CG12093-RA 1..1143 87..1229 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:32:39 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
CG12093-RA 1..1143 87..1229 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:32:26 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
CG12093-RA 1..1143 87..1229 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:54:09 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
CG12093-RA 14..1290 1..1277 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:43:47 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
CG12093-RA 14..1290 1..1277 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:08:21 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
CG12093-RA 20..1296 1..1277 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:32:39 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
CG12093-RA 14..1290 1..1277 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:32:26 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
CG12093-RA 20..1296 1..1277 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:31 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2772560..2773046 791..1277 100 <- Minus
3L 2773105..2773304 591..790 100 <- Minus
3L 2773399..2773988 1..590 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:31 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2772560..2773046 791..1277 100 <- Minus
3L 2773105..2773304 591..790 100 <- Minus
3L 2773399..2773988 1..590 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:31 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2772560..2773046 791..1277 100 <- Minus
3L 2773105..2773304 591..790 100 <- Minus
3L 2773399..2773988 1..590 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:08:21 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2772560..2773046 791..1277 100 <- Minus
arm_3L 2773105..2773304 591..790 100 <- Minus
arm_3L 2773399..2773988 1..590 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:05:15 Download gff for AT02196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2773105..2773304 591..790 100 <- Minus
3L 2772560..2773046 791..1277 100 <- Minus
3L 2773399..2773988 1..590 100   Minus

AT02196.hyp Sequence

Translation from 2 to 1228

> AT02196.hyp
APQLFCQVLNYIFVCLFCAFVFLLLAIIMFIWHYLTLLCLGFALIDAKSI
KKSQANLLEPTLDPDEKLGKIGKSPPDISNDVQRVQVPLGATPGKNGWQG
KWFPHAPGQQQEAIELKMKSTTEEVPPLEFTTKDGWQGKWFPQAPGEPHL
VKKKPLVDNKTKSGKSTTQDTWQGKLFPQGPNESHKTKQSSCDDGKSNLA
VDFDPNDIRDSLNFLCISSNHSLYQPDLSREAILTEHFLPSAYLPPAKCL
NESISYSHLPATNGPYRPMPAEYGTYSYLPPQRYVRNLAEGAIVMLYHPC
AFPGQVKQLQDIVGGCLYRHLVSPSLALSPQRPLALLAWSRSLEMSVVDR
QLAADFIQKHAKQGPLAPEELSRLIVKRQTYKEGLLREAHLVNTADDYEL
CGYLQEDM*

AT02196.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12093-PA 380 CG12093-PA 1..380 29..408 2039 100 Plus

AT02196.pep Sequence

Translation from 86 to 1228

> AT02196.pep
MFIWHYLTLLCLGFALIDAKSIKKSQANLLEPTLDPDEKLGKIGKSPPDI
SNDVQRVQVPLGATPGKNGWQGKWFPHAPGQQQEAIELKMKSTTEEVPPL
EFTTKDGWQGKWFPQAPGEPHLVKKKPLVDNKTKSGKSTTQDTWQGKLFP
QGPNESHKTKQSSCDDGKSNLAVDFDPNDIRDSLNFLCISSNHSLYQPDL
SREAILTEHFLPSAYLPPAKCLNESISYSHLPATNGPYRPMPAEYGTYSY
LPPQRYVRNLAEGAIVMLYHPCAFPGQVKQLQDIVGGCLYRHLVSPSLAL
SPQRPLALLAWSRSLEMSVVDRQLAADFIQKHAKQGPLAPEELSRLIVKR
QTYKEGLLREAHLVNTADDYELCGYLQEDM*

AT02196.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10238-PA 358 GF10238-PA 1..358 1..380 1254 62.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14499-PA 380 GG14499-PA 1..380 1..380 1762 86.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15176-PA 349 GH15176-PA 20..346 16..379 1005 53.8 Plus
Dgri\GH23395-PA 298 GH23395-PA 20..297 16..330 862 53.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12093-PA 380 CG12093-PA 1..380 1..380 2039 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12115-PA 344 GI12115-PA 1..344 2..380 986 51.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18433-PA 352 GL18433-PA 3..352 1..380 1141 57.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11390-PA 350 GA11390-PA 1..350 1..380 1141 57.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14105-PA 380 GM14105-PA 1..380 1..380 1854 90.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13373-PA 379 GD13373-PA 1..378 1..378 1857 92.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13389-PA 362 GJ13389-PA 11..362 7..380 1016 52.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12539-PA 377 GK12539-PA 1..377 1..380 1017 50 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21690-PA 380 GE21690-PA 1..380 1..380 1807 88.2 Plus