Clone AT02348 Report

Search the DGRC for AT02348

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:23
Well:48
Vector:pOTB7
Associated Gene/TranscriptCG4169-RA
Protein status:AT02348.pep: gold
Preliminary Size:1691
Sequenced Size:1689

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4169 2002-01-01 Sim4 clustering to Release 2
CG4169 2002-02-26 Blastp of sequenced clone
CG4169 2003-01-01 Sim4 clustering to Release 3
CG4169 2008-04-29 Release 5.5 accounting
CG4169 2008-08-15 Release 5.9 accounting
CG4169 2008-12-18 5.12 accounting

Clone Sequence Records

AT02348.complete Sequence

1689 bp (1689 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089228

> AT02348.complete
GCCAAGGAAAAACATTTGTTAAATTTTTTCACTTAGTCAAATTATTCAAG
ATCACGATATTTCGAAAATCCCGTGACTTACCATAAGTCACAGCTGGTAC
TCGGTGTGACCATTTTGGAGCGCATTGAAAAACTAGGGCTTAGTTGAACC
CCGTGCGACGGCCACACTAGCGCGAACGACCGTAAAAATTTTCGCTCTGC
GAATATTTGTAAAAAATTGCTTAGAAAGCAAATAGAAGAAATTGTAGCAT
AATCCACGCCATGGCCTGTAACGCTAGCAAGACGTCGCTCCTGCGCGCCA
TCGCCAAACGAGGCTACGCCACCTGCCCGCGTCCCGTCGGCGACCTGTCC
GCCGTGAACGTCAAGGTGCTGGAGAACAAACTGGTGGTAGCCACCGCCGA
TGCAACTCTTCCCGTTTCGCGCGTCTCTTTGGTGCTGGGAGCCGGATCAC
GAAACGAGTCCTACGACATCCAGGGAGCCTCGCACCTGCTTCGTTTGGCC
GGAGGACTGAGCACCCAGAACTCGACCGCCTTCGCCATCGCCCGCAACAT
CCAGCAGGTGGGCGGTACCCTGACCACATGGGGCGATCGCGAGCTCGTCG
GCTACACGGTGACCACCACAGCAGACAACGCCGAGACTGGACTGCGCTAT
CTGCAGGACCTGCTCCAGCCAGCCTTCAAGCCCTGGGAGTTGGTCGACAA
TGCCAAAACGGTGGTCAACCAACTGAACGCCGTCTCCACGGAGGAACGCG
CCATTGAGCTCGTTCACAAGGCCGCCTTCCGCAACGGCCTGGGCAACTCG
ATCTACTCGCCCCGCTTCCAGTTGGGCAAGCTGTCCTCCGAGAGCCTGCT
GCACTACGTGGCCCAGACCTTCGCAGCTGGCCGTGCCGCTGTCGTGGGCG
TGGGAATCGACAACAACACGCTGGCCGGCTTCGCCCAGACCCTGCAGTTC
CCCAGCGGCGGCAGCAAGGCTGCCTCCGCCAACTGGTATGGTGGAGATGC
GCGCAAGGACACTTCTGGTCACCGTGCGGTCGTCGCCGTTGCTGGACAGG
GCGCCGCCGCATCGAACCACAAGGAAGCGCTGGCATTCGCCATCCTGGAG
CAGGCGCTCGGCGCCAAGGCCGCCACCAAGCGCGGCACTTCTGCTGGACT
CTTTGGCGAGGCCGTCAACTGCGCCGGCGGCGTCGGAGCCTCTGTCAAGG
CTGTGAATGCCAGCTACTCGGACGCTGGTCTGTTCGGTTTTGTGGTCTCC
GCCGACTCCAAGGACATTGGCAAGACCGTGGAGTTCCTGGTGCGCGGCCT
GAAGTCGGCTTCGGTGTCTGATAAGGATGTGGCCAGAGGCAAGGCTCTTC
TGAAGGCGCGCATCATCTCGCGCTACTCGTCGGACGGTGGTCTAATTAAG
GAGATCGGTCGCCAGGCGGCGCTCACCCGGAACGTGCTGGAGGCGGACGC
CCTGCTTGGCGCAATCGATGGCATCTCGCAGTCGCAGGTCCAGGAGGCGG
CCAAGAAGGTGGGCAGCTCCAAGCTGGCCGTCGGCGCCATCGGGCACCTG
GCGAACGTGCCCTACGCCTCCGATTTGGCTTAAGTATATAAACACCTGTA
CATCTGTTAACCGTAATGTAACGACTAAATAAACCTGATCAAGGGGATCG
ATCCGCGAACGTAAATACTTAAAAAAAAAAAAAAAAAAA

AT02348.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4169-RA 1789 CG4169-RA 75..1749 1..1675 8360 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16574952..16575880 742..1670 4645 100 Plus
chr3L 24539361 chr3L 16574547..16574852 439..744 1530 100 Plus
chr3L 24539361 chr3L 16573909..16574213 1..305 1525 100 Plus
chr3L 24539361 chr3L 16574358..16574491 306..439 670 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:37:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16585183..16586116 742..1675 4655 99.9 Plus
3L 28110227 3L 16584778..16585083 439..744 1530 100 Plus
3L 28110227 3L 16584140..16584444 1..305 1525 100 Plus
3L 28110227 3L 16584589..16584722 306..439 670 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16578283..16579216 742..1675 4655 99.8 Plus
3L 28103327 3L 16577878..16578183 439..744 1530 100 Plus
3L 28103327 3L 16577240..16577544 1..305 1525 100 Plus
3L 28103327 3L 16577689..16577822 306..439 670 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:18:19 has no hits.

AT02348.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:19:04 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16573909..16574213 1..305 100 -> Plus
chr3L 16574358..16574491 306..439 100 -> Plus
chr3L 16574548..16574851 440..743 100 -> Plus
chr3L 16574954..16575880 744..1670 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:49:14 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 1..1323 261..1583 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:42 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 1..1323 261..1583 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:28 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 1..1323 261..1583 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:44 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 1..1323 261..1583 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:34 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 1..1323 261..1583 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:00:25 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 17..1686 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:42 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 17..1686 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:28 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 17..1686 1..1670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:44 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 17..1686 1..1670 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:34 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
CG4169-RA 17..1686 1..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:04 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16584140..16584444 1..305 100 -> Plus
3L 16584589..16584722 306..439 100 -> Plus
3L 16584779..16585082 440..743 100 -> Plus
3L 16585185..16586111 744..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:04 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16584140..16584444 1..305 100 -> Plus
3L 16584589..16584722 306..439 100 -> Plus
3L 16584779..16585082 440..743 100 -> Plus
3L 16585185..16586111 744..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:04 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16584140..16584444 1..305 100 -> Plus
3L 16584589..16584722 306..439 100 -> Plus
3L 16584779..16585082 440..743 100 -> Plus
3L 16585185..16586111 744..1670 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:28 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16577240..16577544 1..305 100 -> Plus
arm_3L 16577689..16577822 306..439 100 -> Plus
arm_3L 16577879..16578182 440..743 100 -> Plus
arm_3L 16578285..16579211 744..1670 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:34 Download gff for AT02348.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16577240..16577544 1..305 100 -> Plus
3L 16577689..16577822 306..439 100 -> Plus
3L 16577879..16578182 440..743 100 -> Plus
3L 16578285..16579211 744..1670 100   Plus

AT02348.hyp Sequence

Translation from 260 to 1582

> AT02348.hyp
MACNASKTSLLRAIAKRGYATCPRPVGDLSAVNVKVLENKLVVATADATL
PVSRVSLVLGAGSRNESYDIQGASHLLRLAGGLSTQNSTAFAIARNIQQV
GGTLTTWGDRELVGYTVTTTADNAETGLRYLQDLLQPAFKPWELVDNAKT
VVNQLNAVSTEERAIELVHKAAFRNGLGNSIYSPRFQLGKLSSESLLHYV
AQTFAAGRAAVVGVGIDNNTLAGFAQTLQFPSGGSKAASANWYGGDARKD
TSGHRAVVAVAGQGAAASNHKEALAFAILEQALGAKAATKRGTSAGLFGE
AVNCAGGVGASVKAVNASYSDAGLFGFVVSADSKDIGKTVEFLVRGLKSA
SVSDKDVARGKALLKARIISRYSSDGGLIKEIGRQAALTRNVLEADALLG
AIDGISQSQVQEAAKKVGSSKLAVGAIGHLANVPYASDLA*

AT02348.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4169-PB 440 CG4169-PB 1..440 1..440 2172 100 Plus
CG4169-PA 440 CG4169-PA 1..440 1..440 2172 100 Plus
CG3731-PB 470 CG3731-PB 29..456 20..434 208 21.6 Plus
CG3731-PA 470 CG3731-PA 29..456 20..434 208 21.6 Plus

AT02348.pep Sequence

Translation from 260 to 1582

> AT02348.pep
MACNASKTSLLRAIAKRGYATCPRPVGDLSAVNVKVLENKLVVATADATL
PVSRVSLVLGAGSRNESYDIQGASHLLRLAGGLSTQNSTAFAIARNIQQV
GGTLTTWGDRELVGYTVTTTADNAETGLRYLQDLLQPAFKPWELVDNAKT
VVNQLNAVSTEERAIELVHKAAFRNGLGNSIYSPRFQLGKLSSESLLHYV
AQTFAAGRAAVVGVGIDNNTLAGFAQTLQFPSGGSKAASANWYGGDARKD
TSGHRAVVAVAGQGAAASNHKEALAFAILEQALGAKAATKRGTSAGLFGE
AVNCAGGVGASVKAVNASYSDAGLFGFVVSADSKDIGKTVEFLVRGLKSA
SVSDKDVARGKALLKARIISRYSSDGGLIKEIGRQAALTRNVLEADALLG
AIDGISQSQVQEAAKKVGSSKLAVGAIGHLANVPYASDLA*

AT02348.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23920-PA 439 GF23920-PA 1..439 1..440 1994 85.9 Plus
Dana\GF16898-PA 470 GF16898-PA 37..456 28..434 197 22.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13564-PA 440 GG13564-PA 1..440 1..440 2200 96.6 Plus
Dere\GG16882-PA 470 GG16882-PA 29..456 20..434 206 22.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15899-PA 443 GH15899-PA 1..443 1..440 1793 79 Plus
Dgri\GH18338-PA 470 GH18338-PA 30..456 21..434 209 21.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
UQCR-C2-PB 440 CG4169-PB 1..440 1..440 2172 100 Plus
UQCR-C2-PA 440 CG4169-PA 1..440 1..440 2172 100 Plus
UQCR-C1-PB 470 CG3731-PB 29..456 20..434 208 21.6 Plus
UQCR-C1-PA 470 CG3731-PA 29..456 20..434 208 21.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16551-PA 441 GI16551-PA 1..441 1..440 1666 76 Plus
Dmoj\GI23318-PA 470 GI23318-PA 30..456 21..434 199 21.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17869-PA 441 GL17869-PA 1..441 1..440 1904 83 Plus
Dper\GL23351-PA 441 GL23351-PA 1..441 1..440 1797 78.9 Plus
Dper\GL23853-PA 470 GL23853-PA 29..456 20..434 200 21.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18004-PA 441 GA18004-PA 1..441 1..440 1911 83.2 Plus
Dpse\GA27229-PA 441 GA27229-PA 1..440 1..439 1821 79.5 Plus
Dpse\GA17647-PA 470 GA17647-PA 29..456 20..434 202 21.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25644-PA 436 GM25644-PA 1..436 1..440 2199 97.3 Plus
Dsec\GM24191-PA 470 GM24191-PA 29..456 20..434 202 21.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14647-PA 407 GD14647-PA 1..407 1..440 1969 91.6 Plus
Dsim\GD18983-PA 470 GD18983-PA 29..456 20..434 202 21.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12803-PA 441 GJ12803-PA 1..441 1..440 1860 81.9 Plus
Dvir\GJ10322-PA 470 GJ10322-PA 30..456 21..434 203 21.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20075-PA 441 GK20075-PA 1..441 1..440 1825 81.4 Plus
Dwil\GK21348-PA 559 GK21348-PA 74..539 9..439 237 22.4 Plus
Dwil\GK13463-PA 470 GK13463-PA 29..456 20..434 209 22.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19862-PA 440 GE19862-PA 1..440 1..440 2227 97.5 Plus
Dyak\GE24263-PA 470 GE24263-PA 29..456 20..434 206 22.8 Plus