Clone AT02387 Report

Search the DGRC for AT02387

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:23
Well:87
Vector:pOTB7
Associated Gene/TranscriptCG31913-RA
Protein status:AT02387.pep: gold
Sequenced Size:881

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31913 2003-01-01 Sim4 clustering to Release 3
CG31913 2004-05-03 Blastp of sequenced clone
CG31913 2008-04-29 Release 5.5 accounting
CG31913 2008-08-15 Release 5.9 accounting
CG31913 2008-12-18 5.12 accounting

Clone Sequence Records

AT02387.complete Sequence

881 bp (881 high quality bases) assembled on 2004-05-03

GenBank Submission: BT014673

> AT02387.complete
CGCATTTCAAGTATTTGTAGGCCTCTGACACCTCCACACACACACACACA
AAATTCTAAAAGTGATTTCTTGCCGACTAAGAGGCCGCCATGCCAACCTT
AAAGTTGCGTATCGGTCTGCCCTCGAAGCGAACGATGGGCAGCATATGCA
TCTGCGGAGCACTCGCCTCCATCTCGGGCCTGGCCTACATGCGCTGGCGA
CTTGAGGACCGTGTACGCCAGACGGAGTTCTATCAGTTGGCCATCCAGCA
GCTACGCCAGCACAGTGGAGCGGTCGGTCTGCTGGGCGAGCCCATCAAGG
AGTCGGGCTTTAATCTGTCCAACGAGAAGAATCGCTGTGACGAGGACAAG
GCCCAGCTGCAGTTCCATGTCCAGGGTCCCAAGGACAGGGGGACCGTCTA
TTTCTGGGCCTCAAACAACCAGAAACAGGGCTGGCTGATCGATCGCCTGG
AGCTCGAAACGAGACAGAACCCGAACACACGCTACCTGCTTAAGAAGCCC
CCGAACTACTCGCTGGTCAGCAGTGATGGTGATCCGGATCCCCCTAATGC
CGAGTCCTCCGAGGAAACCCAGCAGCCGCAGACGCCGCTCGAGCCACAGG
AGCAGATGGAAATGGAAGATAAGGAGCAGGAGCCGACAGTCCATCAGCAC
CCCAGTATTCAGAACAATCCTCCGCAACAACTGCATCAGCAGCAGGGTCA
GGAGCCAGTGCCTCACGTTCATACGGCGGAGGGCTGATGAAATCGGGGCA
ACTCTCAGGAAGAGCTTTTCAATTTGGCCTTAAATATCTATATTATAGTT
CAATTACTCAGTGCTTTCAGTTTATCCACCTGATTATTCATTAAAGTATA
TTGCTTTATAGTTAAAAAAAAAAAAAAAAAA

AT02387.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31913-RA 863 CG31913-RA 1..863 1..863 4315 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5783081..5783943 1..863 4315 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:37:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5784031..5784894 1..864 4320 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5784031..5784894 1..864 4320 100 Plus
Blast to na_te.dros performed 2019-03-16 16:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2462 570..695 154 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2507 570..695 133 59.2 Plus

AT02387.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:47:11 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5783081..5783943 1..863 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:49:25 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..648 90..737 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:35:35 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..648 90..737 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:45:32 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..648 90..737 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:19:26 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..648 90..737 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:41:20 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..648 90..737 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:42:21 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..863 1..863 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:35:35 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..863 1..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:45:32 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..863 1..863 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:19:26 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..863 1..863 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:41:20 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
CG31913-RA 1..863 1..863 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:47:11 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5784031..5784893 1..863 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:47:11 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5784031..5784893 1..863 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:47:11 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5784031..5784893 1..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:45:32 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5784031..5784893 1..863 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:56:40 Download gff for AT02387.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5784031..5784893 1..863 100   Plus

AT02387.pep Sequence

Translation from 89 to 736

> AT02387.pep
MPTLKLRIGLPSKRTMGSICICGALASISGLAYMRWRLEDRVRQTEFYQL
AIQQLRQHSGAVGLLGEPIKESGFNLSNEKNRCDEDKAQLQFHVQGPKDR
GTVYFWASNNQKQGWLIDRLELETRQNPNTRYLLKKPPNYSLVSSDGDPD
PPNAESSEETQQPQTPLEPQEQMEMEDKEQEPTVHQHPSIQNNPPQQLHQ
QQGQEPVPHVHTAEG*

AT02387.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15580-PA 217 GF15580-PA 1..213 1..215 734 70.4 Plus
Dana\GF12986-PA 150 GF12986-PA 6..141 10..145 465 58.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25096-PA 216 GG25096-PA 1..216 1..215 1032 89.4 Plus
Dere\GG20810-PA 170 GG20810-PA 4..167 8..165 419 50.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21370-PA 191 GH21370-PA 1..187 1..215 562 53.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31913-PA 215 CG31913-PA 1..215 1..215 1153 100 Plus
CG15653-PA 170 CG15653-PA 7..167 11..165 441 51.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20566-PA 187 GI20566-PA 1..139 1..142 493 61.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19033-PA 209 GL19033-PA 1..205 1..215 496 48.4 Plus
Dper\GL10185-PA 191 GL10185-PA 6..188 10..197 458 46.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16560-PA 229 GA16560-PA 1..225 1..215 620 53.5 Plus
Dpse\GA13872-PA 191 GA13872-PA 6..188 10..197 471 47.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18572-PA 215 GM18572-PA 1..215 1..215 1130 97.7 Plus
Dsec\GM15757-PA 170 GM15757-PA 4..167 8..165 421 50.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23362-PA 215 GD23362-PA 1..215 1..215 1136 98.6 Plus
Dsim\GD25231-PA 170 GD25231-PA 4..167 8..165 422 51.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19912-PA 197 GJ19912-PA 1..193 1..215 558 52.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15418-PA 255 GK15418-PA 1..251 1..215 561 47 Plus
Dwil\GK22946-PA 159 GK22946-PA 1..140 1..142 468 57.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25636-PA 214 GE25636-PA 1..214 1..215 997 91.2 Plus
Dyak\GE13750-PA 170 GE13750-PA 4..167 8..165 423 51.2 Plus

AT02387.hyp Sequence

Translation from 89 to 736

> AT02387.hyp
MPTLKLRIGLPSKRTMGSICICGALASISGLAYMRWRLEDRVRQTEFYQL
AIQQLRQHSGAVGLLGEPIKESGFNLSNEKNRCDEDKAQLQFHVQGPKDR
GTVYFWASNNQKQGWLIDRLELETRQNPNTRYLLKKPPNYSLVSSDGDPD
PPNAESSEETQQPQTPLEPQEQMEMEDKEQEPTVHQHPSIQNNPPQQLHQ
QQGQEPVPHVHTAEG*

AT02387.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31913-PA 215 CG31913-PA 1..215 1..215 1153 100 Plus
CG15653-PA 170 CG15653-PA 7..167 11..165 441 51.6 Plus