Clone AT02411 Report

Search the DGRC for AT02411

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:24
Well:11
Vector:pOTB7
Associated Gene/TranscriptCG7707-RA
Protein status:AT02411.pep: gold
Preliminary Size:984
Sequenced Size:1156

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7707 2002-01-01 Sim4 clustering to Release 2
CG7707 2002-02-22 Blastp of sequenced clone
CG7707 2003-01-01 Sim4 clustering to Release 3
CG7707 2008-04-29 Release 5.5 accounting
CG7707 2008-08-15 Release 5.9 accounting
CG7707 2008-12-18 5.12 accounting

Clone Sequence Records

AT02411.complete Sequence

1156 bp (1156 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089233

> AT02411.complete
CGCAACATTTGTTGCCTGTCTACATAGAATTTTTATACAACTCTTTAGTA
CATATCTTTTTACGCATATATTCACAAATCCGTGGCCAGTCGAATGGAGG
AGGCTCAAGTGGATAAACGAATTCGATTGCAGGACTTGCCGGCTGAGGTG
CTGCATATGGTCATGGGCCATTTGGACCTATATCACCACAAGTTGCTGCG
GGAAACTTCGGAGGAACTGAAGCAAATCAGCACGGCGTACATATTGCATC
ATCACAAGGCCTACGAGGTGGCCCATTCGGAAGGAACCTCGGAGAAGGAG
CAGAGTAGCGCGAAAAGGATCATGCTGCAGGTCCTGCGCACGACAATTAG
CTACTTTTCCGACGAAGACAGTGAATCCGACGTAGCCATCAGTCTGCTGC
ACTTCCACTCTAAGGAGGCTGTTTTTTATAACGAAGCTGACCATCTGGGC
AAGTTCCTTGCCCATTTCCTGTTCCTCAATGAGCGAACGTTCAACGTATT
CAGTGCTGAGAGACTGAAGCTTAAGCGCCTCCATTACACAATGGCAATTT
TCGGCCTATTGCGACAATTTCGAAATTTTAGAATCCTGGGATTCGGTAAG
ACCATTTGGCACTGGAACGTGGAGGTCGAATTGAGCAACACATTCATCGG
TGTCATTGGAGAGGCAAAGGCCAGCTTCAATACTGTGGAGTCCCAACGAC
GCATCTACTTCATTTCCATTCTGGCCGAGCTGCTCTTCCACGAGAAGAGC
AATCAGAACTATGGTGGACAGAGGGGCTTGGAAGGCACTTTGTACACCTA
CAGTATTCAGCCAAATTCAAAAGCCAAGCGCACTCCTCGAATGTTTATAA
AGTTTATAGTGGAGGGTCCGCAGTTTCTAATTGATTACCTGAAGGACCTA
ATTAGCGGAGACGAAGATCCTCACAATTCGTTCGACTTGCCACCAGGAAC
GGACTTTGCCATTCGAGTTGAGACCAGGTGCTTTAAAGGACCCAAATTTG
TATATTTGGGAAATCTGAACTTTAATGTGTTGAGATGGAGCGAACTAGTC
GATTGAAGATGTATGTGGACGAAAATGCTAAACAAATTAACGATCATGTA
ACATTTAATTTGAATACAAGATATTTGACGTTTTATATAAAAAAAAAAAA
AAAAAA

AT02411.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-RA 1190 CG7707-RA 43..1188 1..1146 5700 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17233811..17234185 764..1138 1875 100 Plus
chr3L 24539361 chr3L 17232875..17233206 1..332 1660 100 Plus
chr3L 24539361 chr3L 17233249..17233486 327..564 1190 100 Plus
chr3L 24539361 chr3L 17233549..17233748 565..764 1000 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:38:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17244372..17244754 764..1146 1885 99.5 Plus
3L 28110227 3L 17243436..17243767 1..332 1660 100 Plus
3L 28110227 3L 17243810..17244047 327..564 1190 100 Plus
3L 28110227 3L 17244110..17244309 565..764 1000 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17237472..17237854 764..1146 1885 99.4 Plus
3L 28103327 3L 17236536..17236867 1..332 1660 100 Plus
3L 28103327 3L 17236910..17237147 327..564 1190 100 Plus
3L 28103327 3L 17237210..17237409 565..764 1000 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:01:25 has no hits.

AT02411.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:02:32 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17232875..17233204 1..330 100 -> Plus
chr3L 17233253..17233486 331..564 100 -> Plus
chr3L 17233549..17233748 565..764 100 -> Plus
chr3L 17233812..17234185 765..1138 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:49:28 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..963 94..1056 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:44:09 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..963 94..1056 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:56:28 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..963 94..1056 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:12:18 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..963 94..1056 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:19 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..963 94..1056 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:44 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..1138 1..1138 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:44:09 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..1138 1..1138 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:56:28 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..1138 1..1138 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:12:18 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..1138 1..1138 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:19 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
CG7707-RA 1..1138 1..1138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:32 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17243436..17243765 1..330 100 -> Plus
3L 17243814..17244047 331..564 100 -> Plus
3L 17244110..17244309 565..764 100 -> Plus
3L 17244373..17244746 765..1138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:32 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17243436..17243765 1..330 100 -> Plus
3L 17243814..17244047 331..564 100 -> Plus
3L 17244110..17244309 565..764 100 -> Plus
3L 17244373..17244746 765..1138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:32 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17243436..17243765 1..330 100 -> Plus
3L 17243814..17244047 331..564 100 -> Plus
3L 17244110..17244309 565..764 100 -> Plus
3L 17244373..17244746 765..1138 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:56:28 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17236536..17236865 1..330 100 -> Plus
arm_3L 17236914..17237147 331..564 100 -> Plus
arm_3L 17237210..17237409 565..764 100 -> Plus
arm_3L 17237473..17237846 765..1138 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:52 Download gff for AT02411.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17236536..17236865 1..330 100 -> Plus
3L 17236914..17237147 331..564 100 -> Plus
3L 17237210..17237409 565..764 100 -> Plus
3L 17237473..17237846 765..1138 99   Plus

AT02411.pep Sequence

Translation from 93 to 1055

> AT02411.pep
MEEAQVDKRIRLQDLPAEVLHMVMGHLDLYHHKLLRETSEELKQISTAYI
LHHHKAYEVAHSEGTSEKEQSSAKRIMLQVLRTTISYFSDEDSESDVAIS
LLHFHSKEAVFYNEADHLGKFLAHFLFLNERTFNVFSAERLKLKRLHYTM
AIFGLLRQFRNFRILGFGKTIWHWNVEVELSNTFIGVIGEAKASFNTVES
QRRIYFISILAELLFHEKSNQNYGGQRGLEGTLYTYSIQPNSKAKRTPRM
FIKFIVEGPQFLIDYLKDLISGDEDPHNSFDLPPGTDFAIRVETRCFKGP
KFVYLGNLNFNVLRWSELVD*

AT02411.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10166-PA 343 GF10166-PA 16..343 2..319 513 34.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13607-PA 320 GG13607-PA 1..320 1..320 1328 75.6 Plus
Dere\GG17346-PA 335 GG17346-PA 1..322 1..320 890 52.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16157-PA 338 GH16157-PA 27..327 8..307 250 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-PA 320 CG7707-PA 1..320 1..320 1665 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12428-PA 340 GI12428-PA 16..326 6..302 249 25.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24773-PA 343 GL24773-PA 32..321 11..293 268 26.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28906-PA 343 GA28906-PA 32..321 11..293 261 26.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25689-PA 319 GM25689-PA 1..319 1..320 1563 91.9 Plus
Dsec\GM23856-PA 331 GM23856-PA 17..325 2..314 730 46.8 Plus
Dsec\GM18753-PA 295 GM18753-PA 1..289 22..314 676 45.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14695-PA 319 GD14695-PA 1..319 1..320 1553 91.2 Plus
Dsim\GD18664-PA 330 GD18664-PA 16..324 2..314 721 46.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12324-PA 346 GJ12324-PA 34..325 8..295 274 25.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19903-PA 321 GE19903-PA 1..315 1..318 1298 74.8 Plus
Dyak\GE26007-PA 313 GE26007-PA 1..301 1..300 763 49.3 Plus

AT02411.hyp Sequence

Translation from 93 to 1055

> AT02411.hyp
MEEAQVDKRIRLQDLPAEVLHMVMGHLDLYHHKLLRETSEELKQISTAYI
LHHHKAYEVAHSEGTSEKEQSSAKRIMLQVLRTTISYFSDEDSESDVAIS
LLHFHSKEAVFYNEADHLGKFLAHFLFLNERTFNVFSAERLKLKRLHYTM
AIFGLLRQFRNFRILGFGKTIWHWNVEVELSNTFIGVIGEAKASFNTVES
QRRIYFISILAELLFHEKSNQNYGGQRGLEGTLYTYSIQPNSKAKRTPRM
FIKFIVEGPQFLIDYLKDLISGDEDPHNSFDLPPGTDFAIRVETRCFKGP
KFVYLGNLNFNVLRWSELVD*

AT02411.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7707-PA 320 CG7707-PA 1..320 1..320 1665 100 Plus