Clone AT02512 Report

Search the DGRC for AT02512

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:25
Well:12
Vector:pOTB7
Associated Gene/TranscriptCG4406-RA
Protein status:AT02512.pep: gold
Preliminary Size:981
Sequenced Size:1200

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4406 2002-01-01 Sim4 clustering to Release 2
CG4406 2002-02-22 Blastp of sequenced clone
CG4406 2003-01-01 Sim4 clustering to Release 3
CG4406 2008-04-29 Release 5.5 accounting
CG4406 2008-08-15 Release 5.9 accounting
CG4406 2008-12-18 5.12 accounting

Clone Sequence Records

AT02512.complete Sequence

1200 bp (1200 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089234

> AT02512.complete
TCGATACTCGAGGCGTTGTTTATGTATCGGTCTATCGTCTTGTAGAAATG
TTTAATATTATGCTTGTTAAATTTGTTGTCATCTTTGCCCTGATCCTCGC
CAGCTGTCGGGTGGAGGCGGATAACACCTCGGTGTTGCCGGAGGGCTTTG
TGGACGCCGCTCAGCGCTCTACACACACGAACAACTGGGCGGTGCTGGTG
GACGCATCGAGATTCTGGTTCAACTACCGGCATGTGGCCAATGTGCTGTC
TATCTACCGCTCGGTAAAGAGACTGGGCATTCCTGACTCCCAGATCATAC
TGATGATCGCCGACGACATGGCCTGCAATGCTAGGAACCCACGGCCCGGC
CAGGTGTACAATAACGCCAACCAGCACATCAATGTGTACGGAGACGATGT
AGAGGTGGATTACCGCGGCTACGAGGTGACAGTTGAGAACTTTGTGCGTC
TGCTAACTGGGCGCACCCAGAACGGCACGGCGCGCTCGAAGAAGCTGCTC
TCGGACGCGGGCAGCAATGTGCTCATCTACCTAACCGGACACGGCGGCGA
TGGATTCCTCAAGTTCCAGGACTCGGAGGAGATAACCAGCCAGGAGTTGG
CCGACGGCATCCAACAGATGTGGGAGAAAAAGCGGTACAATGAGCTATTC
TTCATGGTGGACACTTGCCAAGCAGCTTCGCTCTATGAGAAGTTCACCTC
GCCGAATGTCCTGGCAGTGGCTAGCAGTCTTGTTGGCGAGGATTCCTTAT
CGCACCATGTGGATCCATCGATTGGAGTCTACATGATAGACCGGTACACC
TACTACGCCTTGGAGTTCCTGGAGAAGGTGCAGCCCTTTAGCAAACGGAC
CATAGGCGAATTTCTGCAAGTGTGCCCCAAGAGAGTGTGCATTTCGACAG
TGGGAGTGCGCAAGGATCTGTACCCCCGGGATCCGCACAAGGTGCCCATC
ACAGACTTCTTTGGAGCCATACGTCCCACACGGGTATCCACCGATCGCAT
CAATGTGACCTTGGCCAATGAGGATGATTTCATTTTCGACAAAGATAAGA
TGGTGACCAAAAAGCCCTTCAAAATCGTGATGGAGTCACAGTTTCCTTCC
GAGCTTTTTAAATAGTCTGGATAACTTAATATGATTCATGTGATAATATT
AATTTTATTCGTAAATACATCATTTCATTATTAAAAAAAAAAAAAAAAAA

AT02512.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4406-RA 1310 CG4406-RA 56..1239 1..1184 5920 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1902603..1903238 636..1 3180 100 Minus
chrX 22417052 chrX 1902024..1902184 1024..864 805 100 Minus
chrX 22417052 chrX 1901806..1901963 1182..1025 790 100 Minus
chrX 22417052 chrX 1902409..1902527 752..634 595 100 Minus
chrX 22417052 chrX 1902246..1902357 863..752 560 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:38:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2008708..2009343 636..1 3180 100 Minus
X 23542271 X 2008129..2008289 1024..864 805 100 Minus
X 23542271 X 2007909..2008068 1184..1025 800 100 Minus
X 23542271 X 2008514..2008632 752..634 595 100 Minus
X 23542271 X 2008351..2008462 863..752 560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2016806..2017441 636..1 3180 100 Minus
X 23527363 X 2016227..2016387 1024..864 805 100 Minus
X 23527363 X 2016007..2016166 1184..1025 800 100 Minus
X 23527363 X 2016612..2016730 752..634 595 100 Minus
X 23527363 X 2016449..2016560 863..752 560 100 Minus
Blast to na_te.dros performed 2019-03-15 11:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 465..542 89..13 136 67.5 Minus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 1688..1772 797..885 128 65.2 Plus

AT02512.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:27:40 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1902409..1902526 635..752 100 <- Minus
chrX 1902024..1902184 864..1024 100 <- Minus
chrX 1902246..1902356 753..863 100 <- Minus
chrX 1901806..1901963 1025..1182 100 <- Minus
chrX 1902605..1903238 1..634 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:49:34 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 1..1068 48..1115 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:43:48 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 1..1068 48..1115 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:29:03 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 1..1068 48..1115 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:12:06 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 1..1068 48..1115 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:34:02 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 1..1068 48..1115 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:22 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 1..1182 1..1182 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:48 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 1..1182 1..1182 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:29:03 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 22..1203 1..1182 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:12:06 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 1..1182 1..1182 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:34:02 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
CG4406-RA 22..1203 1..1182 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:27:40 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
X 2007911..2008068 1025..1182 100 <- Minus
X 2008129..2008289 864..1024 100 <- Minus
X 2008351..2008461 753..863 100 <- Minus
X 2008514..2008631 635..752 100 <- Minus
X 2008710..2009343 1..634 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:27:40 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
X 2007911..2008068 1025..1182 100 <- Minus
X 2008129..2008289 864..1024 100 <- Minus
X 2008351..2008461 753..863 100 <- Minus
X 2008514..2008631 635..752 100 <- Minus
X 2008710..2009343 1..634 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:27:40 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
X 2007911..2008068 1025..1182 100 <- Minus
X 2008129..2008289 864..1024 100 <- Minus
X 2008351..2008461 753..863 100 <- Minus
X 2008514..2008631 635..752 100 <- Minus
X 2008710..2009343 1..634 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:29:03 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1901944..1902101 1025..1182 100 <- Minus
arm_X 1902162..1902322 864..1024 100 <- Minus
arm_X 1902384..1902494 753..863 100 <- Minus
arm_X 1902547..1902664 635..752 100 <- Minus
arm_X 1902743..1903376 1..634 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:37 Download gff for AT02512.complete
Subject Subject Range Query Range Percent Splice Strand
X 2016808..2017441 1..634 100   Minus
X 2016009..2016166 1025..1182 100 <- Minus
X 2016227..2016387 864..1024 100 <- Minus
X 2016449..2016559 753..863 100 <- Minus
X 2016612..2016729 635..752 100 <- Minus

AT02512.hyp Sequence

Translation from 2 to 1114

> AT02512.hyp
DTRGVVYVSVYRLVEMFNIMLVKFVVIFALILASCRVEADNTSVLPEGFV
DAAQRSTHTNNWAVLVDASRFWFNYRHVANVLSIYRSVKRLGIPDSQIIL
MIADDMACNARNPRPGQVYNNANQHINVYGDDVEVDYRGYEVTVENFVRL
LTGRTQNGTARSKKLLSDAGSNVLIYLTGHGGDGFLKFQDSEEITSQELA
DGIQQMWEKKRYNELFFMVDTCQAASLYEKFTSPNVLAVASSLVGEDSLS
HHVDPSIGVYMIDRYTYYALEFLEKVQPFSKRTIGEFLQVCPKRVCISTV
GVRKDLYPRDPHKVPITDFFGAIRPTRVSTDRINVTLANEDDFIFDKDKM
VTKKPFKIVMESQFPSELFK*

AT02512.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4406-PA 355 CG4406-PA 1..355 16..370 1845 100 Plus

AT02512.pep Sequence

Translation from 47 to 1114

> AT02512.pep
MFNIMLVKFVVIFALILASCRVEADNTSVLPEGFVDAAQRSTHTNNWAVL
VDASRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMIADDMACNARNPRP
GQVYNNANQHINVYGDDVEVDYRGYEVTVENFVRLLTGRTQNGTARSKKL
LSDAGSNVLIYLTGHGGDGFLKFQDSEEITSQELADGIQQMWEKKRYNEL
FFMVDTCQAASLYEKFTSPNVLAVASSLVGEDSLSHHVDPSIGVYMIDRY
TYYALEFLEKVQPFSKRTIGEFLQVCPKRVCISTVGVRKDLYPRDPHKVP
ITDFFGAIRPTRVSTDRINVTLANEDDFIFDKDKMVTKKPFKIVMESQFP
SELFK*

AT02512.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21988-PA 354 GF21988-PA 4..354 5..355 1732 90.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12662-PA 351 GG12662-PA 1..351 5..355 1847 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12598-PA 349 GH12598-PA 1..349 5..355 1662 88.6 Plus
Dgri\GH24411-PA 270 GH24411-PA 1..269 86..354 1328 92.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-K-PA 355 CG4406-PA 1..355 1..355 1845 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15431-PA 334 GI15431-PA 5..334 26..355 1645 92.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15131-PA 355 GL15131-PA 2..355 3..355 1722 90.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18163-PA 355 GA18163-PA 2..355 3..355 1722 90.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18930-PA 355 GM18930-PA 1..355 1..355 1894 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16397-PA 331 GD16397-PA 1..331 1..355 1721 92.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14719-PA 350 GJ14719-PA 1..350 5..355 1668 89.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25748-PA 356 GK25748-PA 1..349 5..355 1658 88.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16991-PA 351 GE16991-PA 1..351 5..355 1858 98 Plus