Clone AT02670 Report

Search the DGRC for AT02670

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:26
Well:70
Vector:pOTB7
Associated Gene/TranscriptCG31407-RA
Protein status:AT02670.pep: gold
Preliminary Size:2806
Sequenced Size:789

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31407 2003-01-01 Sim4 clustering to Release 3
CG31407 2004-01-09 Blastp of sequenced clone
CG31407 2008-04-29 Release 5.5 accounting
CG31407 2008-08-15 Release 5.9 accounting
CG31407 2008-12-18 5.12 accounting

Clone Sequence Records

AT02670.complete Sequence

789 bp (789 high quality bases) assembled on 2004-01-09

GenBank Submission: BT011421

> AT02670.complete
ATTGTCTCTATCGACCAAAATATTTCGATTTCCCTTTTCCCTGGCGAGGC
AAAACCAAAGCCGTTGAAAAATTTATTGTTAATTTTTTTTTCAATACCAA
AAGCAAGAATCTAGGTAGTAGAAAGGGAGGCGCAGCGTCGCCATCCAGTC
GCGTAATTCAGAATGATTCCCACTAATCTGGGCAGACAGAATGGGGCTCT
GGTGTTGGAAGTGTTGAAGGTGCTGGGTCGCCCGGCGACCAGTTACGAGG
TGGCGGAAAGAGTGGCCGACGTCTACAGGCTGCCGCTGCACCGCATCCGT
CCCGTGGTCACCGACGTCCTGGAGGCAGGATCACGACATGGATTCTTTAG
CAGCCTCAATGGCCATTATTCGGTGGTGCAGCCGGTGGTGGAGCAACTGG
GACGGGATATAGACCAGTATGCAGCCGATATACTGGCGGGATATAGTTGC
GAGGGTTCTCTGCCCAAGATGTCGACCCTGATGCTCAAGCTACAGCAACT
GGACGGGTCTCCGCCCATGATGACGGGGATCAGGTATCCCCGAGTGAGCT
CGGGGGAGCAACGCGAACACATGCCCTCCGGCGATGTGTCCTTGGACGCC
CGTCTCATGCTGCCCTTTCCTCGAGTACTATGAAAATTCTCCATCTCTCA
AATTGTATCAGACAGTGAACTGTTTTGTGGTTTGTGCAACAGAAAAAATC
TCGGGTTCAATAAAGTCGAGGCAACGGCTTCGAATTTGGATCAAGAAAAA
AAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAA

AT02670.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-RA 763 CG31407-RA 20..763 1..744 3690 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5848600..5849345 746..1 3730 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:38:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10022844..10023589 746..1 3700 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9763675..9764420 746..1 3700 99.7 Minus
Blast to na_te.dros performed on 2019-03-15 17:39:47 has no hits.

AT02670.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:40:40 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5848601..5849345 1..745 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:49:43 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 1..471 163..633 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:39:46 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 1..471 163..633 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:42:56 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 1..471 163..633 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:23:29 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 1..471 163..633 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:48 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 1..471 163..633 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:48:16 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 20..763 1..744 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:39:45 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 20..763 1..744 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:42:56 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 20..764 1..745 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:23:29 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 20..763 1..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:48 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
CG31407-RA 20..764 1..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:40 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10022845..10023589 1..745 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:40 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10022845..10023589 1..745 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:40 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10022845..10023589 1..745 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:42:56 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5848567..5849311 1..745 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:00:58 Download gff for AT02670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9763676..9764420 1..745 99   Minus

AT02670.pep Sequence

Translation from 162 to 632

> AT02670.pep
MIPTNLGRQNGALVLEVLKVLGRPATSYEVAERVADVYRLPLHRIRPVVT
DVLEAGSRHGFFSSLNGHYSVVQPVVEQLGRDIDQYAADILAGYSCEGSL
PKMSTLMLKLQQLDGSPPMMTGIRYPRVSSGEQREHMPSGDVSLDARLML
PFPRVL*

AT02670.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17140-PA 159 GF17140-PA 1..154 1..151 551 74.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17309-PA 157 GG17309-PA 1..157 1..156 728 91.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17942-PA 149 GH17942-PA 1..148 1..146 315 48.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-PB 156 CG31407-PB 1..156 1..156 796 100 Plus
CG31407-PA 156 CG31407-PA 1..156 1..156 796 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22081-PA 151 GI22081-PA 1..145 1..143 384 54.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27284-PA 143 GL27284-PA 7..115 3..116 318 62.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16234-PA 143 GA16234-PA 7..115 3..116 310 61.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26193-PA 156 GM26193-PA 1..156 1..156 770 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20742-PA 156 GD20742-PA 1..156 1..156 774 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22901-PA 151 GJ22901-PA 1..145 1..143 370 54.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11894-PA 168 GK11894-PA 1..168 1..152 380 50.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24712-PA 158 GE24712-PA 1..158 1..156 709 89.9 Plus

AT02670.hyp Sequence

Translation from 162 to 632

> AT02670.hyp
MIPTNLGRQNGALVLEVLKVLGRPATSYEVAERVADVYRLPLHRIRPVVT
DVLEAGSRHGFFSSLNGHYSVVQPVVEQLGRDIDQYAADILAGYSCEGSL
PKMSTLMLKLQQLDGSPPMMTGIRYPRVSSGEQREHMPSGDVSLDARLML
PFPRVL*

AT02670.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31407-PB 156 CG31407-PB 1..156 1..156 796 100 Plus
CG31407-PA 156 CG31407-PA 1..156 1..156 796 100 Plus