Clone AT02704 Report

Search the DGRC for AT02704

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:27
Well:4
Vector:pOTB7
Associated Gene/TranscriptCG15056-RA
Protein status:AT02704.pep: gold
Preliminary Size:1092
Sequenced Size:1346

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15056 2002-01-01 Sim4 clustering to Release 2
CG15056 2002-02-26 Blastp of sequenced clone
CG15056 2003-01-01 Sim4 clustering to Release 3
CG15056 2008-04-29 Release 5.5 accounting
CG15056 2008-08-15 Release 5.9 accounting
CG15056 2008-12-18 5.12 accounting

Clone Sequence Records

AT02704.complete Sequence

1346 bp (1346 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089237

> AT02704.complete
AAAACAATGAACTTCATCTCGTTCAGCGTAATTAGCCGCTTTGACTTTTT
TTGGTTGGACGTGCTTAAGCAATTGGATCTGAAGTCTCGCATTAGCTTTG
CAGCCAGTTGCGATATGTTTGAGAACATCTATGTTAGGAGTTCTCCTCTA
CGCCTGAGCCGCGTAGTTAATTTGGAGGAAATGATTGAGTTCTCATTGCT
TGAAACCAAACTATTTGTGGAACTTTCGGGTTCTGACATTGAGATTATAC
GCGGAGGTCCACATACCCCAATGTTTTCACATTTCGAGGATTTCATACGC
CTGATGTCGATCCGGCTAACGAAGGTGAATGAGATTGCTCTCGAGGGATT
CCAACTCACGCAATACAAGTGGTTCAACGCTCCCGAAACCAGCTTCAGCA
ACTTGACCTATGTTAGCTTGCGTCGTTGTCAGCTCAATGATGAGAACCTT
GTGGGCTGGGAGTTCTTGACTCATCTGGAGACATTGGATCTGAGATACAA
CGATCGATTGACTGGGAGCTGTTTGATGAGTCTTCCAACTTCGTTGTTGT
CCCTTTATATAACCGGCTGCCGGAATTTGTGCCCGAATCAACTAATATTC
CTGAACCGTATACCACGACTACGCGAGCTGCGTGCCTCGGACCTGATGCC
CGGCGGGCACTGGCATATCTATCGTGACCTGGTGCTGGCTTGTCCCTTGC
TGGTGATGGTCGAGATATCAATTTGCTCCCTAAACCGGGATGAGTATAGG
CTGGGTGAGCTGCGCTATCTGCAGTCGTTGGTCATTAAAGCTCACTCCAC
AGACACAATTCGCTGTAAGGTCAGCGACTGGATGCTGATTTCCCTATTGG
ATGTGCCCTTTCTGCGAAACCTGATGTTTTCAGATGCACCGAGTGGCTTT
GTTAGCGCAAATGCCCTGTCGATTATATCGAGATTTCGGCAGCTGCGTGT
TCTGAAAATGCCGAATCAGCCATACCGGCCCAATGACCTCTTAAGATTGA
GGAATCTAACTTTTCTTGAGACGCTGGACCTCAGCAATTCACCCTATATC
ACTAATGAGGTTGTCATCGAACTGGTCATAGGAATTCCCAACCTTAGTGT
GTTAATAGTCCAAGGATGTCCTCTGCTCACAAATCGTGTATACCTTGATG
CAGAATTGGCCAGTAAGAAAAGGAGCAATGGGAACATGGTCAAGGTGCAG
CTATAGACTGACTCGAAAGAACGTCCAAATGCGTAATTCAGCAACAACAT
AACAAAATCGGCATCCATATTAAAACAAATTGTACTTATCATTGTAATAA
TAAATGACTTATCATAATAATAAATGAAAAAAAAAAAAAAAAAAAA

AT02704.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG15056-RA 1452 CG15056-RA 106..1432 1..1327 6635 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18304800..18306103 23..1326 6490 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:38:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18415608..18416912 23..1327 6525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18423706..18425010 23..1327 6525 100 Plus
Blast to na_te.dros performed 2019-03-16 07:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 6216..6346 1190..1323 121 58.5 Plus

AT02704.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:23:57 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18304705..18304730 1..26 100 -> Plus
chrX 18304804..18306103 27..1326 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:49:51 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
CG15056-RA 1..1200 7..1206 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:44 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
CG15056-RA 1..1200 7..1206 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:40:11 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
CG15056-RA 1..1200 7..1206 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:45 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
CG15056-RA 1..1200 7..1206 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:31:53 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
CG15056-RA 1..1200 7..1206 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:00:26 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
CG15056-RA 1..1326 1..1326 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:44 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
CG15056-RA 1..1326 1..1326 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:40:11 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
CG15056-RA 1..1326 1..1326 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:45 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
CG15056-RA 1..1326 1..1326 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:31:53 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
CG15056-RA 99..1424 1..1326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:23:57 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
X 18415513..18415538 1..26 100 -> Plus
X 18415612..18416911 27..1326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:23:57 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
X 18415513..18415538 1..26 100 -> Plus
X 18415612..18416911 27..1326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:23:57 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
X 18415513..18415538 1..26 100 -> Plus
X 18415612..18416911 27..1326 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:40:11 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18309546..18309571 1..26 100 -> Plus
arm_X 18309645..18310944 27..1326 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:35 Download gff for AT02704.complete
Subject Subject Range Query Range Percent Splice Strand
X 18423710..18425009 27..1326 100   Plus
X 18423611..18423636 1..26 100 -> Plus

AT02704.hyp Sequence

Translation from 1 to 1205

> AT02704.hyp
KTMNFISFSVISRFDFFWLDVLKQLDLKSRISFAASCDMFENIYVRSSPL
RLSRVVNLEEMIEFSLLETKLFVELSGSDIEIIRGGPHTPMFSHFEDFIR
LMSIRLTKVNEIALEGFQLTQYKWFNAPETSFSNLTYVSLRRCQLNDENL
VGWEFLTHLETLDLRYNDRLTGSCLMSLPTSLLSLYITGCRNLCPNQLIF
LNRIPRLRELRASDLMPGGHWHIYRDLVLACPLLVMVEISICSLNRDEYR
LGELRYLQSLVIKAHSTDTIRCKVSDWMLISLLDVPFLRNLMFSDAPSGF
VSANALSIISRFRQLRVLKMPNQPYRPNDLLRLRNLTFLETLDLSNSPYI
TNEVVIELVIGIPNLSVLIVQGCPLLTNRVYLDAELASKKRSNGNMVKVQ
L*

AT02704.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG15056-PA 399 CG15056-PA 1..399 3..401 2045 100 Plus
CG14891-PA 495 CG14891-PA 118..481 15..380 435 33.2 Plus

AT02704.pep Sequence

Translation from 6 to 1205

> AT02704.pep
MNFISFSVISRFDFFWLDVLKQLDLKSRISFAASCDMFENIYVRSSPLRL
SRVVNLEEMIEFSLLETKLFVELSGSDIEIIRGGPHTPMFSHFEDFIRLM
SIRLTKVNEIALEGFQLTQYKWFNAPETSFSNLTYVSLRRCQLNDENLVG
WEFLTHLETLDLRYNDRLTGSCLMSLPTSLLSLYITGCRNLCPNQLIFLN
RIPRLRELRASDLMPGGHWHIYRDLVLACPLLVMVEISICSLNRDEYRLG
ELRYLQSLVIKAHSTDTIRCKVSDWMLISLLDVPFLRNLMFSDAPSGFVS
ANALSIISRFRQLRVLKMPNQPYRPNDLLRLRNLTFLETLDLSNSPYITN
EVVIELVIGIPNLSVLIVQGCPLLTNRVYLDAELASKKRSNGNMVKVQL*

AT02704.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22436-PA 552 GF22436-PA 120..517 13..393 422 33 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19164-PA 430 GG19164-PA 39..429 7..398 1042 53.9 Plus
Dere\GG21665-PA 502 GG21665-PA 120..488 13..378 487 34.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22715-PA 647 GH22715-PA 149..510 19..381 248 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15056-PA 399 CG15056-PA 1..399 1..399 2045 100 Plus
CG14891-PA 495 CG14891-PA 118..481 13..378 435 33.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15616-PA 669 GI15616-PA 155..509 19..381 204 26.1 Plus
Dmoj\GI18500-PA 458 GI18500-PA 126..445 7..328 184 24 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17393-PA 675 GD17393-PA 292..675 15..399 1367 69.3 Plus
Dsim\GD19110-PA 492 GD19110-PA 109..478 4..378 387 31.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21363-PA 656 GJ21363-PA 159..518 19..381 277 27.3 Plus
Dvir\GJ17296-PA 673 GJ17296-PA 165..519 19..381 204 25.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15085-PA 529 GK15085-PA 132..484 19..378 153 26 Plus