Clone AT02829 Report

Search the DGRC for AT02829

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:28
Well:29
Vector:pOTB7
Associated Gene/TranscriptCG11601-RA
Protein status:AT02829.pep: gold
Preliminary Size:828
Sequenced Size:1169

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11601 2002-01-01 Sim4 clustering to Release 2
CG11601 2002-01-15 Blastp of sequenced clone
CG11601 2003-01-01 Sim4 clustering to Release 3
CG11601 2008-04-29 Release 5.5 accounting
CG11601 2008-08-15 Release 5.9 accounting
CG11601 2008-12-18 5.12 accounting

Clone Sequence Records

AT02829.complete Sequence

1169 bp (1169 high quality bases) assembled on 2002-01-15

GenBank Submission: AY089240

> AT02829.complete
TTAAAAACGCCTCCTTGCTGGAATGAAACTCGACGTGTGTTGCGCCCTAA
TCAGCTGTTGGCTAGCTTTATTTGTTTTGTTTTGCTCAGCGTGCGGTGCC
CTTTGCACCTTTTCTGGAGGAAATGGGCAAGAGCAAGAAGCAGGTGCGCG
AGTTCAACGCCGCCAAGGAAGCTGTCGAGGCCACTAAAGCCCAGTTGAAC
ACTTGCAACGATGCCTATACGAGCGGTGCCTTCAAATACCTGAGATTCCT
GGTCCATCTCCTGGCGGCAGCGCAGTTTTCGTATGGGATATACTTTCACT
ACTTCCGGGTGCATTGGCCCACGGATTTGCTAGACGAGGATGAACTGAAG
GCGCGGTGGGGCGGCAAGTTCAAGTACCTTACCTTCTTGGACGTCATTCT
ACAGGCCATCTACCACTCATTGGCTCTGCTGAACGATCTCTTCGGCGATA
ACAATGTCTCCGGGGATTCAAAATCCATGTTGCGATCGGTGAGGGACTAT
GTGTTCGCCGCCTTTGCCTTTCCTGTCGCCCACAATGTCTGCCTCTCGTT
TTGGGTCATCTACGTGTGGGACCGTGAGCTCATCTTTCCCTCAGCGCTGG
ATGCGATTTTCCCCAGCTGGTTGAATCACGTGGTACACACGAATGTGGCC
CTTTTGGCCATTATGGACCTGTTTACCTGCTTCCGCCGCTATCCGAGTCG
ATTGGCAGGCATCACGGGCAACGTCTCCTTCATCCTGCTTTACATCATCT
GGCTGCACATTGTTCGCTACTTCAGTGGCGAGTGGGTGTATCCCATTCTG
GAAGTGCTGCCCGCATACCTGCGCTACGTGTTCTTGGCACTACTTGTGGG
GTTCAACCTGGTTTGCTATCTGCTCGGGGAGTTCGCCAACAACGTCGTTT
GGGGTCCGGAGTTTAAGCTCCTAAATCAACAGAAATTAAAGCAAGGCTAG
GACTCGAGGATTTAAAATCGTTTATTAGTTACACAAATTATTATGTATAA
TTTTGTAAACTTGAAGGCACTTTCTGAGGTACGATTTGTGTGCCCAAGAG
GCTTATTTATATCGTACTTAAATCTATAATCTACAATCTAAAGTCCTGTA
CCCACGGCAAAGAAAAATAATGAAAATAAATTATTATCCTCTTTGGCATT
TAAAAAAAAAAAAAAAAAA

AT02829.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11601-RA 1323 CG11601-RA 51..1202 1..1152 5760 100 Plus
smo-RA 4128 smo-RA 3923..4128 1152..947 1030 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 282685..283300 616..1 3080 100 Minus
chr2L 23010047 chr2L 282002..282539 1151..614 2690 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:38:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 282654..283269 616..1 3080 100 Minus
2L 23513712 2L 281970..282508 1152..614 2695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 282654..283269 616..1 3080 100 Minus
2L 23513712 2L 281970..282508 1152..614 2695 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:21:40 has no hits.

AT02829.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:22:48 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 282002..282536 617..1151 100 <- Minus
chr2L 282685..283300 1..616 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:50:04 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 1..828 123..950 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:48:30 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 1..828 123..950 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:39:14 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 1..828 123..950 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:54 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 1..828 123..950 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:35 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 1..828 123..950 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:12:30 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 13..1163 1..1151 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:48:30 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 13..1163 1..1151 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:39:14 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 1..1151 1..1151 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:54 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 13..1163 1..1151 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:35 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
CG11601-RA 1..1151 1..1151 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:48 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
2L 281971..282505 617..1151 100 <- Minus
2L 282654..283269 1..616 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:48 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
2L 281971..282505 617..1151 100 <- Minus
2L 282654..283269 1..616 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:48 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
2L 281971..282505 617..1151 100 <- Minus
2L 282654..283269 1..616 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:39:14 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 281971..282505 617..1151 100 <- Minus
arm_2L 282654..283269 1..616 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:49:47 Download gff for AT02829.complete
Subject Subject Range Query Range Percent Splice Strand
2L 281971..282505 617..1151 100 <- Minus
2L 282654..283269 1..616 100   Minus

AT02829.pep Sequence

Translation from 122 to 949

> AT02829.pep
MGKSKKQVREFNAAKEAVEATKAQLNTCNDAYTSGAFKYLRFLVHLLAAA
QFSYGIYFHYFRVHWPTDLLDEDELKARWGGKFKYLTFLDVILQAIYHSL
ALLNDLFGDNNVSGDSKSMLRSVRDYVFAAFAFPVAHNVCLSFWVIYVWD
RELIFPSALDAIFPSWLNHVVHTNVALLAIMDLFTCFRRYPSRLAGITGN
VSFILLYIIWLHIVRYFSGEWVYPILEVLPAYLRYVFLALLVGFNLVCYL
LGEFANNVVWGPEFKLLNQQKLKQG*

AT02829.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24937-PA 275 GF24937-PA 1..275 1..275 1257 85.5 Plus
Dana\GF24926-PA 250 GF24926-PA 2..248 23..270 640 47.6 Plus
Dana\GF24553-PA 310 GF24553-PA 7..225 34..261 432 39.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24665-PA 275 GG24665-PA 1..275 1..275 1412 96.7 Plus
Dere\GG24663-PA 248 GG24663-PA 11..246 34..270 623 48.5 Plus
Dere\GG13922-PA 236 GG13922-PA 11..221 41..260 389 40 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11507-PA 277 GH11507-PA 1..277 1..275 1071 73.3 Plus
Dgri\GH10220-PA 252 GH10220-PA 13..252 34..273 593 46.9 Plus
Dgri\GH14847-PA 129 GH14847-PA 2..129 34..173 211 33.6 Plus
Dgri\GH23361-PA 129 GH23361-PA 2..129 34..173 206 33.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11601-PC 275 CG11601-PC 1..275 1..275 1459 100 Plus
CG11601-PB 275 CG11601-PB 1..275 1..275 1459 100 Plus
CG11601-PA 275 CG11601-PA 1..275 1..275 1459 100 Plus
CG3625-PB 248 CG3625-PB 7..246 29..270 638 48.4 Plus
CG3625-PA 245 CG3625-PA 8..243 26..270 572 42.9 Plus
CG3625-PE 247 CG3625-PE 15..245 43..270 546 42.9 Plus
CG3625-PC 247 CG3625-PC 15..245 43..270 546 42.9 Plus
CG6149-PB 234 CG6149-PB 11..221 41..260 422 40.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17003-PA 275 GI17003-PA 1..275 1..275 1095 70.5 Plus
Dmoj\GI15038-PA 252 GI15038-PA 2..246 23..266 598 45.3 Plus
Dmoj\GI13700-PA 223 GI13700-PA 7..215 43..260 289 37.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25826-PA 249 GL25826-PA 7..248 28..271 628 47.6 Plus
Dper\GL25827-PA 114 GL25827-PA 3..98 165..260 453 86.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11092-PA 277 GA11092-PA 1..260 1..261 1186 83.9 Plus
Dpse\GA17568-PA 249 GA17568-PA 7..248 28..271 630 48 Plus
Dpse\GA19393-PA 239 GA19393-PA 14..227 41..263 391 39.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16683-PA 275 GM16683-PA 1..275 1..275 1444 98.9 Plus
Dsec\GM16682-PA 245 GM16682-PA 16..244 34..271 544 43.9 Plus
Dsec\GM24755-PA 296 GM24755-PA 71..281 41..260 370 40 Plus
Dsec\GM13272-PA 141 GM13272-PA 11..140 34..164 333 48.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22971-PA 275 GD22971-PA 1..275 1..275 1448 99.6 Plus
Dsim\GD22970-PA 245 GD22970-PA 16..244 34..271 544 43.9 Plus
Dsim\GD12806-PA 296 GD12806-PA 71..281 41..260 394 40.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24281-PA 275 GJ24281-PA 1..274 1..274 1147 75.5 Plus
Dvir\GJ17242-PA 251 GJ17242-PA 12..251 34..273 609 47.3 Plus
Dvir\GJ14040-PA 228 GJ14040-PA 13..224 40..260 375 38 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14826-PA 275 GK14826-PA 1..275 1..275 1183 79.3 Plus
Dwil\GK14825-PA 257 GK14825-PA 4..256 20..271 626 46.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16283-PA 275 GE16283-PA 1..275 1..275 1415 96.4 Plus
Dyak\GE16272-PA 248 GE16272-PA 11..246 34..270 624 48.5 Plus
Dyak\GE20218-PA 229 GE20218-PA 11..220 41..259 378 41.6 Plus

AT02829.hyp Sequence

Translation from 122 to 949

> AT02829.hyp
MGKSKKQVREFNAAKEAVEATKAQLNTCNDAYTSGAFKYLRFLVHLLAAA
QFSYGIYFHYFRVHWPTDLLDEDELKARWGGKFKYLTFLDVILQAIYHSL
ALLNDLFGDNNVSGDSKSMLRSVRDYVFAAFAFPVAHNVCLSFWVIYVWD
RELIFPSALDAIFPSWLNHVVHTNVALLAIMDLFTCFRRYPSRLAGITGN
VSFILLYIIWLHIVRYFSGEWVYPILEVLPAYLRYVFLALLVGFNLVCYL
LGEFANNVVWGPEFKLLNQQKLKQG*

AT02829.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11601-PC 275 CG11601-PC 1..275 1..275 1459 100 Plus
CG11601-PB 275 CG11601-PB 1..275 1..275 1459 100 Plus
CG11601-PA 275 CG11601-PA 1..275 1..275 1459 100 Plus
CG3625-PB 248 CG3625-PB 7..246 29..270 638 48.4 Plus
CG3625-PA 245 CG3625-PA 8..243 26..270 572 42.9 Plus