Clone AT03047 Report

Search the DGRC for AT03047

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:30
Well:47
Vector:pOTB7
Associated Gene/TranscriptDecay-RA
Protein status:AT03047.pep: gold
Preliminary Size:927
Sequenced Size:1472

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14902 2002-01-01 Sim4 clustering to Release 2
CG14902 2002-02-22 Blastp of sequenced clone
CG14902 2003-01-01 Sim4 clustering to Release 3
decay 2008-04-29 Release 5.5 accounting
decay 2008-08-15 Release 5.9 accounting
decay 2008-12-18 5.12 accounting

Clone Sequence Records

AT03047.complete Sequence

1472 bp (1472 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089242

> AT03047.complete
AGCGACACTTTCGCCGGAAGTTGCCAATTTCCCTGACGAGCGCCCACTTT
TGTGGGCGTGAACCCGTCGGGGAAATCAAATTGTCTGGTGCAATGGCAAA
GGGAATTGTATTTTGCTACCAATAAACGTAACTTCCCCTCGAGCAGGCTA
ATCAACGTTGGGCAAGAGCCCGAAAAATACCGCGGCGAGCGAGAGAAGAA
TCCACCCCAGCAAGCTCAAGGTGATAAGACGGCTGCATTGATTAGATAAG
ATGTTAGGCGAACGGGAGCGAGAGCTTTTTTTTGTCGTTTGATAGGTGAA
AACTTCCAATCGCGCTTAGTCACAGGTTGCTGCCAAAGCGCGCGGACGGT
CAGAAATGGACGACACCGACTTCTCGCTCTTCGGGCAGAAGAACAAGCAC
AAGAAGGACAAGGCGGATGCCACCAAGATCGCCCATACGCCCACATCGGA
GCTGGACCTCAAAAGGATCATAATCTCGCGCCCCACCAACGAGGACACAT
ACGAGAATTGCGCGCGAGCGGGCATTGCGCTAATCCTGAACCACAAGGAT
GTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGATCGCGATGACAT
GGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCACCTTCGACGATC
TGACCTTCTCCGAGATCAACGACACGCTCAAAGAGGTTGCTCGCGAGGAT
CACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGTCACACGGCACCGA
AGGCAAGGTCTACGCTAAGGACATGTCATATCCTGTGGAGCGCCTTTGGA
ATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACAAACCCAAACTC
TTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAGGCAGTCGAGTT
CTCCAGCTTCGCTGTGATGACCAGGGAACTGGTCCCGGAGCCCGCTGCCG
CCGTTCAGCCCATCACCTATGCCATTCCCAGCACGGCGGACATCCTCGTC
TTCTACTCCACATTCGACAAATTCTTCTCATTCCGTAACGTTGACGATGG
CTCCTGGTTCATCCAGAGCTTGTGCCGCGTCCTCGACCAGGCCGCCGCCA
ACGAAGCTGCCACGCCGGAGGGCGTCGAGCTACTCCGCCTGCTGACCGCA
GTGAATCGGAAGGTGGCCTACGAGTACCAGTCGAATACGAAGAACGAGGC
CCTCAACCAGATGAAGGAAATGCCCAACTTTATGTCGACACTGACCAAAA
CATTCCAGCTGCGTGTTAAGCCCAAGACCTGAGCTCCGGTCACGAAATCA
GCGACAATCCAATCGGGACTGTGAGTCAGTCCGCGGGTCAAGAACGAGGG
ACGCCACAACTCTTTCATTTAATCGTAATGTTTGCAATTTGTTAATAGAA
ATACATATCGATGGCACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

AT03047.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
decay-RA 1775 decay-RA 315..1734 1..1420 7070 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12325341..12326026 686..1 3415 99.9 Minus
chr3R 27901430 chr3R 12323729..12324128 1419..1020 1985 99.8 Minus
chr3R 27901430 chr3R 12324434..12324767 1019..686 1670 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:38:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16500673..16501358 686..1 3430 100 Minus
3R 32079331 3R 16499057..16499457 1420..1020 1990 99.8 Minus
3R 32079331 3R 16499763..16500096 1019..686 1655 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16241504..16242189 686..1 3430 100 Minus
3R 31820162 3R 16239888..16240288 1420..1020 1990 99.7 Minus
3R 31820162 3R 16240594..16240927 1019..686 1655 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 00:12:18 has no hits.

AT03047.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:13:18 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12323729..12324128 1020..1419 99 <- Minus
chr3R 12324434..12324766 687..1019 100 <- Minus
chr3R 12325341..12326026 1..686 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:50:17 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 1..927 356..1282 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:43:58 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 1..927 356..1282 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:55:38 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 1..927 356..1282 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:12:11 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 1..927 356..1282 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:14 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
Decay-RA 1..927 356..1282 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:32 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 315..1733 1..1419 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:58 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 315..1733 1..1419 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:55:38 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 1..1111 309..1419 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:12:12 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
decay-RA 315..1733 1..1419 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:14 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
Decay-RA 1..1111 309..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:18 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16499058..16499457 1020..1419 99 <- Minus
3R 16499763..16500095 687..1019 99 <- Minus
3R 16500673..16501358 1..686 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:18 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16499058..16499457 1020..1419 99 <- Minus
3R 16499763..16500095 687..1019 99 <- Minus
3R 16500673..16501358 1..686 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:13:18 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16499058..16499457 1020..1419 99 <- Minus
3R 16499763..16500095 687..1019 99 <- Minus
3R 16500673..16501358 1..686 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:55:38 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12324780..12325179 1020..1419 99 <- Minus
arm_3R 12325485..12325817 687..1019 99 <- Minus
arm_3R 12326395..12327080 1..686 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:44 Download gff for AT03047.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16240594..16240926 687..1019 99 <- Minus
3R 16239889..16240288 1020..1419 99 <- Minus
3R 16241504..16242189 1..686 100   Minus

AT03047.pep Sequence

Translation from 355 to 1281

> AT03047.pep
MDDTDFSLFGQKNKHKKDKADATKIAHTPTSELDLKRIIISRPTNEDTYE
NCARAGIALILNHKDVKGQKQRVGTERDRDDMEATLQGFGFDVRTFDDLT
FSEINDTLKEVAREDHSQNDCFVLAVMSHGTEGKVYAKDMSYPVERLWNP
FLGDNCKTLKNKPKLFFIQACRGANLEKAVEFSSFAVMTRELVPEPAAAV
QPITYAIPSTADILVFYSTFDKFFSFRNVDDGSWFIQSLCRVLDQAAANE
AATPEGVELLRLLTAVNRKVAYEYQSNTKNEALNQMKEMPNFMSTLTKTF
QLRVKPKT*

AT03047.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17937-PA 309 GF17937-PA 1..309 1..308 1423 89.3 Plus
Dana\GF13064-PA 326 GF13064-PA 82..320 56..306 444 36.2 Plus
Dana\GF18666-PA 338 GF18666-PA 93..327 56..302 435 36.8 Plus
Dana\GF13826-PA 525 GF13826-PA 328..519 72..300 178 27.3 Plus
Dana\GF10584-PA 450 GF10584-PA 195..402 56..249 168 24.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16826-PA 308 GG16826-PA 1..308 1..308 1602 96.4 Plus
Dere\GG22866-PA 323 GG22866-PA 45..317 20..306 439 33.4 Plus
Dere\GG10839-PA 531 GG10839-PA 315..525 54..300 214 28 Plus
Dere\GG15422-PA 451 GG15422-PA 187..402 48..247 182 25.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17516-PA 309 GH17516-PA 1..309 1..308 1305 80.9 Plus
Dgri\GH20516-PA 309 GH20516-PA 1..309 1..308 1302 80.6 Plus
Dgri\GH19956-PA 351 GH19956-PA 105..344 56..307 441 37.6 Plus
Dgri\GH19945-PA 294 GH19945-PA 48..288 56..308 438 37.5 Plus
Dgri\GH21208-PA 318 GH21208-PA 50..316 33..308 397 32.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-PA 308 CG14902-PA 1..308 1..308 1599 100 Plus
Dcp-1-PA 323 CG5370-PA 47..317 22..306 410 34 Plus
Drice-PA 339 CG7788-PA 94..331 56..305 405 35.6 Plus
Dronc-PA 450 CG8091-PA 196..397 56..243 186 27.3 Plus
Strica-PB 527 CG7863-PB 317..484 60..246 185 31.1 Plus
Strica-PA 527 CG7863-PA 317..484 60..246 185 31.1 Plus
Dredd-PD 488 CG7486-PD 258..477 55..295 179 26.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10391-PA 539 GI10391-PA 1..268 1..267 1115 77.6 Plus
Dmoj\GI20496-PA 318 GI20496-PA 70..312 51..306 456 37.8 Plus
Dmoj\GI22043-PA 345 GI22043-PA 100..340 56..308 456 37.9 Plus
Dmoj\GI22869-PA 295 GI22869-PA 67..295 56..302 376 35.7 Plus
Dmoj\GI21266-PA 556 GI21266-PA 359..511 72..243 187 31.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27295-PA 308 GL27295-PA 1..308 1..308 1502 90.3 Plus
Dper\GL16870-PA 323 GL16870-PA 79..317 56..306 423 35 Plus
Dper\GL23515-PA 344 GL23515-PA 99..333 56..302 419 36 Plus
Dper\GL11317-PA 257 GL11317-PA 19..253 56..306 376 32.4 Plus
Dper\GL12563-PA 457 GL12563-PA 202..410 56..249 207 28.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13340-PA 308 GA13340-PA 1..308 1..308 1502 90.3 Plus
Dpse\GA18828-PA 323 GA18828-PA 79..317 56..306 423 35 Plus
Dpse\GA20588-PA 344 GA20588-PA 99..333 56..302 420 36 Plus
Dpse\GA24681-PA 261 GA24681-PA 19..257 56..306 403 34.6 Plus
Dpse\GA20817-PA 457 GA20817-PA 202..410 56..249 202 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15423-PA 308 GM15423-PA 1..308 1..308 1641 98.4 Plus
Dsec\GM16025-PA 323 GM16025-PA 59..317 35..306 426 33.8 Plus
Dsec\GM12823-PA 343 GM12823-PA 98..332 56..302 417 35.6 Plus
Dsec\GM16490-PA 526 GM16490-PA 316..520 60..300 213 29.9 Plus
Dsec\GM25197-PA 449 GM25197-PA 188..400 48..247 175 23.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20281-PA 302 GD20281-PA 1..302 1..308 1476 88.6 Plus
Dsim\GD11774-PA 323 GD11774-PA 59..317 35..306 426 33.8 Plus
Dsim\GD21467-PA 343 GD21467-PA 98..335 56..305 415 35.6 Plus
Dsim\GD14228-PA 449 GD14228-PA 188..400 48..247 184 23.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22849-PA 310 GJ22849-PA 1..309 1..307 1429 85.1 Plus
Dvir\GJ24096-PA 345 GJ24096-PA 100..339 56..307 445 37.3 Plus
Dvir\GJ22346-PA 314 GJ22346-PA 35..310 20..308 417 32.5 Plus
Dvir\GJ19552-PA 271 GJ19552-PA 27..265 56..305 383 36.1 Plus
Dvir\GJ23418-PA 300 GJ23418-PA 40..292 36..302 334 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11868-PA 311 GK11868-PA 1..311 1..308 1366 83.9 Plus
Dwil\GK11928-PA 346 GK11928-PA 100..338 56..305 436 37.5 Plus
Dwil\GK23280-PA 330 GK23280-PA 85..324 56..306 424 35.4 Plus
Dwil\GK11926-PA 256 GK11926-PA 18..253 56..302 420 36 Plus
Dwil\GK11927-PA 255 GK11927-PA 18..252 56..302 406 36 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26146-PA 308 GE26146-PA 1..308 1..308 1630 98.1 Plus
Dyak\GE14302-PA 325 GE14302-PA 81..319 56..306 430 35 Plus
Dyak\GE23886-PA 339 GE23886-PA 94..332 56..306 427 35.8 Plus
Dyak\GE19433-PA 526 GE19433-PA 316..520 60..300 211 29.5 Plus
Dyak\GE21731-PA 451 GE21731-PA 197..402 56..247 204 29.1 Plus

AT03047.hyp Sequence

Translation from 355 to 1281

> AT03047.hyp
MDDTDFSLFGQKNKHKKDKADATKIAHTPTSELDLKRIIISRPTNEDTYE
NCARAGIALILNHKDVKGQKQRVGTERDRDDMEATLQGFGFDVRTFDDLT
FSEINDTLKEVAREDHSQNDCFVLAVMSHGTEGKVYAKDMSYPVERLWNP
FLGDNCKTLKNKPKLFFIQACRGANLEKAVEFSSFAVMTRELVPEPAAAV
QPITYAIPSTADILVFYSTFDKFFSFRNVDDGSWFIQSLCRVLDQAAANE
AATPEGVELLRLLTAVNRKVAYEYQSNTKNEALNQMKEMPNFMSTLTKTF
QLRVKPKT*

AT03047.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Decay-PA 308 CG14902-PA 1..308 1..308 1599 100 Plus
Dcp-1-PA 323 CG5370-PA 47..317 22..306 410 34 Plus
Drice-PA 339 CG7788-PA 94..331 56..305 405 35.6 Plus
Dronc-PA 450 CG8091-PA 196..397 56..243 186 27.3 Plus
Strica-PB 527 CG7863-PB 317..484 60..246 185 31.1 Plus