BDGP Sequence Production Resources |
Search the DGRC for AT03213
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 32 |
Well: | 13 |
Vector: | pOTB7 |
Associated Gene/Transcript | ymp-RA |
Protein status: | AT03213.pep: gold |
Preliminary Size: | 291 |
Sequenced Size: | 1268 |
Gene | Date | Evidence |
---|---|---|
CG12250 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12250 | 2002-05-17 | Blastp of sequenced clone |
CG12250 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12250 | 2008-04-29 | Release 5.5 accounting |
CG12250 | 2008-08-15 | Release 5.9 accounting |
CG12250 | 2008-12-18 | 5.12 accounting |
1268 bp (1268 high quality bases) assembled on 2002-05-17
GenBank Submission: AY118672
> AT03213.complete CAGAAACACAAGTTCGGCAAACACATTACAAAATTTAAAAAAAAAAAAAT AAAAATTTAGTGTATTGGATTAGCCGATTTGATTAAAATGGCGCTTCGTC TTACGACCATTGCTCTTCTACACCGTGCTCCTTTATTAGTTGTGCCAAAG TTAAAAGCAACACCGCCAACACGCACTCTATTGTTAAGAAAGAATCTGGT ACCGTTTTTAGATGATGATCCTTGTGTGTTCTCAAAGAAAGCCGTCATGC ATCATTGGGGGGTCCTTCCGATTCTGTTCATAACACTTGTTGGAGGTATA CTTAAGGTTGGCGCCATGATCCGCCTGGCATTGGTGAAGGACGATGTGTT CTTTACCAAGGATTCGGCATACTATATGTACTTGGAGACGCGCAAAGGTC CCTGGTACAAGCAAAAGAGTCGTAAGTGGGGTGGTCGGGATGAGTATGAT ATGCCACCGGGATTGCTCCTGGCCAACCAGGGCGATGTTTCTGGTCCTTC ATTCTAGGAGGCGTTGAAAATAATGTTGAAAATGCCGACAAGCATACAAG TGACGAAGGTCCGGATTTTAAAATCATTGCAGGACATGCAGTGATCACAG GCGTGGCTTTGGGTTTGGCAACAATGTTGTAGAAAGTCGTAGGACGGAGC TGTCCCACTTTTATTGAAGACTCATGTTTCAGTTTTACTATGATCTGTAT TACACAGATGAAAAGGACGACGGCAAGAAAAATGACAAATTCGCTTGGAT TGGAGGAGGTGGTGGTCAGATTAGCATTGAAACGATGTATTTTATAGACT TGACTCTACGTCTTCCATCTGTTCGCTTGGCCTTGAGGTTTCGAATCCGC TGAGGACTTGCTACTAGACTAATGAGTTAGTTCTTAGCCAAGCTATCAAG GTATTCGAACAAAACCTATGGAGTGCAGGATACGCGCAATATAATCTGGC TCGAAGAATGTGGATCCTTGCGAAGAAACATACCATTTTGCCACACAATT TTATAAGAGGCGCCACCAAGTGGCGAGTAGCTACTTCTTTCATATGGAAA GTAAAGAGAGGTCCTCGATGTAAAATGTTCTACAGCTATGTAGAATGCAA ATGGTGGATGTAAAATTGAGGCCTTTTTTCGTAACTGCCGGATTTGAACC AATTTTTTTTACATCTTTAGCGCCCTAAATTCTCATAGTTCATAAATTTG GCATTTATATTTTTACAATGAAGTAATAAAATAAGGTATTTATGAAATTA AAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ymp-RA | 1571 | ymp-RA | 272..1240 | 1..971 | 4445 | 97.5 | Plus |
ymp.e | 1571 | ymp.e | 272..1240 | 1..971 | 4445 | 97.5 | Plus |
ymp.a | 1068 | ymp.a | 11..511 | 1..502 | 2425 | 99.2 | Plus |
ymp-RA | 1571 | ymp-RA | 1254..1534 | 968..1252 | 1165 | 95 | Plus |
ymp.e | 1571 | ymp.e | 1254..1534 | 968..1252 | 1165 | 95 | Plus |
ymp.a | 1068 | ymp.a | 789..1068 | 968..1251 | 1160 | 95 | Plus |
ymp.a | 1068 | ymp.a | 512..775 | 708..971 | 1065 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 21414844..21415302 | 983..525 | 2070 | 96.7 | Minus |
chr3R | 27901430 | chr3R | 21414525..21414789 | 1249..984 | 1205 | 97.7 | Minus |
chr3R | 27901430 | chr3R | 21415732..21415897 | 426..261 | 830 | 100 | Minus |
chr3R | 27901430 | chr3R | 21431968..21432117 | 150..1 | 750 | 100 | Minus |
chr3R | 27901430 | chr3R | 21415593..21415671 | 502..424 | 395 | 100 | Minus |
chr3R | 27901430 | chr3R | 21431725..21431797 | 263..191 | 365 | 100 | Minus |
chr3R | 27901430 | chr3R | 21431864..21431905 | 190..149 | 210 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 25591847..25592292 | 971..525 | 1900 | 95.5 | Minus |
3R | 32079331 | 3R | 25591499..25591763 | 1252..984 | 1065 | 94.8 | Minus |
3R | 32079331 | 3R | 25592721..25592886 | 426..261 | 815 | 99.4 | Minus |
3R | 32079331 | 3R | 25608969..25609117 | 150..1 | 700 | 99.3 | Minus |
3R | 32079331 | 3R | 25592583..25592661 | 502..424 | 365 | 97.5 | Minus |
3R | 32079331 | 3R | 25608726..25608798 | 263..191 | 365 | 100 | Minus |
3R | 32079331 | 3R | 25608865..25608906 | 190..149 | 210 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 25332678..25333123 | 971..525 | 1910 | 95.5 | Minus |
3R | 31820162 | 3R | 25332330..25332594 | 1252..984 | 1085 | 94.7 | Minus |
3R | 31820162 | 3R | 25333552..25333717 | 426..261 | 815 | 99.3 | Minus |
3R | 31820162 | 3R | 25349800..25349948 | 150..1 | 710 | 99.3 | Minus |
3R | 31820162 | 3R | 25333414..25333492 | 502..424 | 365 | 97.4 | Minus |
3R | 31820162 | 3R | 25349557..25349629 | 263..191 | 365 | 100 | Minus |
3R | 31820162 | 3R | 25349696..25349737 | 190..149 | 210 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S2 | 1735 | S2 S2 1735bp | 1640..1705 | 1177..1241 | 119 | 72.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 21414525..21414789 | 984..1249 | 97 | <- | Minus |
chr3R | 21414844..21415301 | 526..983 | 96 | <- | Minus |
chr3R | 21415364..21415386 | 503..525 | 100 | <- | Minus |
chr3R | 21415593..21415668 | 427..502 | 100 | <- | Minus |
chr3R | 21415732..21415896 | 262..426 | 100 | <- | Minus |
chr3R | 21431727..21431797 | 191..261 | 100 | <- | Minus |
chr3R | 21431864..21431903 | 151..190 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12250-RA | 1..420 | 88..507 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ymp-RA | 1..420 | 88..507 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ymp-RA | 1..420 | 88..507 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12250-RA | 1..420 | 88..507 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ymp-RA | 1..420 | 88..507 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12250-RA | 11..974 | 1..966 | 97 | <- | Plus |
CG12250-RA | 993..1270 | 967..1249 | 94 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ymp-RA | 11..974 | 1..966 | 97 | <- | Plus |
ymp-RA | 993..1270 | 967..1249 | 94 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ymp-RA | 11..974 | 1..966 | 97 | <- | Plus |
ymp-RA | 993..1270 | 967..1249 | 94 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12250-RA | 12..694 | 1..685 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ymp-RA | 11..974 | 1..966 | 97 | <- | Plus |
ymp-RA | 993..1270 | 967..1249 | 94 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25591502..25591763 | 984..1249 | 94 | <- | Minus |
3R | 25591818..25591828 | 973..983 | 100 | <- | Minus |
3R | 25591846..25592291 | 526..972 | 95 | <- | Minus |
3R | 25592354..25592376 | 503..525 | 100 | <- | Minus |
3R | 25592583..25592658 | 427..502 | 97 | <- | Minus |
3R | 25592721..25592885 | 262..426 | 99 | <- | Minus |
3R | 25608728..25608798 | 191..261 | 100 | <- | Minus |
3R | 25608865..25608904 | 151..190 | 100 | <- | Minus |
3R | 25608969..25609117 | 1..150 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25591502..25591763 | 984..1249 | 94 | <- | Minus |
3R | 25591818..25591828 | 973..983 | 100 | <- | Minus |
3R | 25591846..25592291 | 526..972 | 95 | <- | Minus |
3R | 25592354..25592376 | 503..525 | 100 | <- | Minus |
3R | 25592583..25592658 | 427..502 | 97 | <- | Minus |
3R | 25592721..25592885 | 262..426 | 99 | <- | Minus |
3R | 25608728..25608798 | 191..261 | 100 | <- | Minus |
3R | 25608865..25608904 | 151..190 | 100 | <- | Minus |
3R | 25608969..25609117 | 1..150 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25591502..25591763 | 984..1249 | 94 | <- | Minus |
3R | 25591818..25591828 | 973..983 | 100 | <- | Minus |
3R | 25591846..25592291 | 526..972 | 95 | <- | Minus |
3R | 25592354..25592376 | 503..525 | 100 | <- | Minus |
3R | 25592583..25592658 | 427..502 | 97 | <- | Minus |
3R | 25592721..25592885 | 262..426 | 99 | <- | Minus |
3R | 25608728..25608798 | 191..261 | 100 | <- | Minus |
3R | 25608865..25608904 | 151..190 | 100 | <- | Minus |
3R | 25608969..25609117 | 1..150 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 21417224..21417485 | 984..1249 | 94 | <- | Minus |
arm_3R | 21417540..21417550 | 973..983 | 100 | <- | Minus |
arm_3R | 21417568..21418013 | 526..972 | 95 | <- | Minus |
arm_3R | 21418076..21418098 | 503..525 | 100 | <- | Minus |
arm_3R | 21418305..21418380 | 427..502 | 97 | <- | Minus |
arm_3R | 21418443..21418607 | 262..426 | 99 | <- | Minus |
arm_3R | 21434450..21434520 | 191..261 | 100 | <- | Minus |
arm_3R | 21434587..21434626 | 151..190 | 100 | <- | Minus |
arm_3R | 21434691..21434839 | 1..150 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25332333..25332594 | 984..1249 | 94 | <- | Minus |
3R | 25332649..25332659 | 973..983 | 100 | <- | Minus |
3R | 25332677..25333122 | 526..972 | 95 | <- | Minus |
3R | 25333185..25333207 | 503..525 | 100 | <- | Minus |
3R | 25333414..25333489 | 427..502 | 97 | <- | Minus |
3R | 25333552..25333716 | 262..426 | 99 | <- | Minus |
3R | 25349559..25349629 | 191..261 | 100 | <- | Minus |
3R | 25349696..25349735 | 151..190 | 100 | <- | Minus |
3R | 25349800..25349948 | 1..150 | 99 | Minus |
Translation from 87 to 506
> AT03213.hyp MALRLTTIALLHRAPLLVVPKLKATPPTRTLLLRKNLVPFLDDDPCVFSK KAVMHHWGVLPILFITLVGGILKVGAMIRLALVKDDVFFTKDSAYYMYLE TRKGPWYKQKSRKWGGRDEYDMPPGLLLANQGDVSGPSF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ymp-PA | 139 | CG12250-PA | 1..139 | 1..139 | 733 | 100 | Plus |
ymp-PC | 173 | CG12250-PC | 1..139 | 1..139 | 733 | 100 | Plus |
ymp-PD | 186 | CG12250-PD | 1..139 | 1..139 | 730 | 99.3 | Plus |
ymp-PB | 146 | CG12250-PB | 1..140 | 1..139 | 438 | 63.6 | Plus |
Translation from 87 to 506
> AT03213.pep MALRLTTIALLHRAPLLVVPKLKATPPTRTLLLRKNLVPFLDDDPCVFSK KAVMHHWGVLPILFITLVGGILKVGAMIRLALVKDDVFFTKDSAYYMYLE TRKGPWYKQKSRKWGGRDEYDMPPGLLLANQGDVSGPSF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17268-PA | 89 | GF17268-PA | 1..78 | 62..138 | 166 | 42.3 | Plus |
Dana\GF17267-PA | 169 | GF17267-PA | 1..101 | 1..137 | 151 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12237-PA | 156 | GG12237-PA | 65..144 | 59..138 | 388 | 91.2 | Plus |
Dere\GG12235-PA | 77 | GG12235-PA | 1..59 | 1..59 | 271 | 88.1 | Plus |
Dere\GG12236-PA | 87 | GG12236-PA | 1..82 | 59..139 | 134 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17219-PA | 62 | GH17219-PA | 1..60 | 78..138 | 129 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ymp-PA | 139 | CG12250-PA | 1..139 | 1..139 | 733 | 100 | Plus |
ymp-PC | 173 | CG12250-PC | 1..139 | 1..139 | 733 | 100 | Plus |
ymp-PD | 186 | CG12250-PD | 1..139 | 1..139 | 730 | 99.3 | Plus |
ymp-PB | 146 | CG12250-PB | 1..140 | 1..139 | 438 | 63.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10358-PA | 98 | GI10358-PA | 2..80 | 60..139 | 151 | 42 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27370-PA | 465 | GL27370-PA | 7..85 | 59..138 | 160 | 46.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11508-PC | 154 | GA11508-PC | 1..127 | 1..138 | 274 | 45.1 | Plus |
Dpse\GA11508-PB | 170 | GA11508-PB | 1..127 | 1..138 | 272 | 45.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10234-PA | 725 | GM10234-PA | 601..719 | 22..139 | 355 | 57.1 | Plus |
Dsec\GM10236-PA | 111 | GM10236-PA | 1..63 | 77..139 | 330 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18188-PA | 155 | GD18188-PA | 1..140 | 1..139 | 443 | 62.9 | Plus |
Dsim\GD18189-PA | 79 | GD18189-PA | 1..62 | 77..138 | 328 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14397-PA | 101 | GK14397-PA | 1..84 | 54..138 | 141 | 43 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10686-PA | 97 | GE10686-PA | 1..63 | 77..139 | 306 | 90.5 | Plus |
Dyak\GE10684-PA | 76 | GE10684-PA | 1..59 | 1..59 | 270 | 88.1 | Plus |
Dyak\jgw-PA | 323 | GE10683-PA | 1..61 | 1..58 | 186 | 65.6 | Plus |