Clone AT03213 Report

Search the DGRC for AT03213

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:32
Well:13
Vector:pOTB7
Associated Gene/Transcriptymp-RA
Protein status:AT03213.pep: gold
Preliminary Size:291
Sequenced Size:1268

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12250 2002-01-01 Sim4 clustering to Release 2
CG12250 2002-05-17 Blastp of sequenced clone
CG12250 2003-01-01 Sim4 clustering to Release 3
CG12250 2008-04-29 Release 5.5 accounting
CG12250 2008-08-15 Release 5.9 accounting
CG12250 2008-12-18 5.12 accounting

Clone Sequence Records

AT03213.complete Sequence

1268 bp (1268 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118672

> AT03213.complete
CAGAAACACAAGTTCGGCAAACACATTACAAAATTTAAAAAAAAAAAAAT
AAAAATTTAGTGTATTGGATTAGCCGATTTGATTAAAATGGCGCTTCGTC
TTACGACCATTGCTCTTCTACACCGTGCTCCTTTATTAGTTGTGCCAAAG
TTAAAAGCAACACCGCCAACACGCACTCTATTGTTAAGAAAGAATCTGGT
ACCGTTTTTAGATGATGATCCTTGTGTGTTCTCAAAGAAAGCCGTCATGC
ATCATTGGGGGGTCCTTCCGATTCTGTTCATAACACTTGTTGGAGGTATA
CTTAAGGTTGGCGCCATGATCCGCCTGGCATTGGTGAAGGACGATGTGTT
CTTTACCAAGGATTCGGCATACTATATGTACTTGGAGACGCGCAAAGGTC
CCTGGTACAAGCAAAAGAGTCGTAAGTGGGGTGGTCGGGATGAGTATGAT
ATGCCACCGGGATTGCTCCTGGCCAACCAGGGCGATGTTTCTGGTCCTTC
ATTCTAGGAGGCGTTGAAAATAATGTTGAAAATGCCGACAAGCATACAAG
TGACGAAGGTCCGGATTTTAAAATCATTGCAGGACATGCAGTGATCACAG
GCGTGGCTTTGGGTTTGGCAACAATGTTGTAGAAAGTCGTAGGACGGAGC
TGTCCCACTTTTATTGAAGACTCATGTTTCAGTTTTACTATGATCTGTAT
TACACAGATGAAAAGGACGACGGCAAGAAAAATGACAAATTCGCTTGGAT
TGGAGGAGGTGGTGGTCAGATTAGCATTGAAACGATGTATTTTATAGACT
TGACTCTACGTCTTCCATCTGTTCGCTTGGCCTTGAGGTTTCGAATCCGC
TGAGGACTTGCTACTAGACTAATGAGTTAGTTCTTAGCCAAGCTATCAAG
GTATTCGAACAAAACCTATGGAGTGCAGGATACGCGCAATATAATCTGGC
TCGAAGAATGTGGATCCTTGCGAAGAAACATACCATTTTGCCACACAATT
TTATAAGAGGCGCCACCAAGTGGCGAGTAGCTACTTCTTTCATATGGAAA
GTAAAGAGAGGTCCTCGATGTAAAATGTTCTACAGCTATGTAGAATGCAA
ATGGTGGATGTAAAATTGAGGCCTTTTTTCGTAACTGCCGGATTTGAACC
AATTTTTTTTACATCTTTAGCGCCCTAAATTCTCATAGTTCATAAATTTG
GCATTTATATTTTTACAATGAAGTAATAAAATAAGGTATTTATGAAATTA
AAAAAAAAAAAAAAAAAA

AT03213.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
ymp-RA 1571 ymp-RA 272..1240 1..971 4445 97.5 Plus
ymp.e 1571 ymp.e 272..1240 1..971 4445 97.5 Plus
ymp.a 1068 ymp.a 11..511 1..502 2425 99.2 Plus
ymp-RA 1571 ymp-RA 1254..1534 968..1252 1165 95 Plus
ymp.e 1571 ymp.e 1254..1534 968..1252 1165 95 Plus
ymp.a 1068 ymp.a 789..1068 968..1251 1160 95 Plus
ymp.a 1068 ymp.a 512..775 708..971 1065 93.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21414844..21415302 983..525 2070 96.7 Minus
chr3R 27901430 chr3R 21414525..21414789 1249..984 1205 97.7 Minus
chr3R 27901430 chr3R 21415732..21415897 426..261 830 100 Minus
chr3R 27901430 chr3R 21431968..21432117 150..1 750 100 Minus
chr3R 27901430 chr3R 21415593..21415671 502..424 395 100 Minus
chr3R 27901430 chr3R 21431725..21431797 263..191 365 100 Minus
chr3R 27901430 chr3R 21431864..21431905 190..149 210 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:38:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25591847..25592292 971..525 1900 95.5 Minus
3R 32079331 3R 25591499..25591763 1252..984 1065 94.8 Minus
3R 32079331 3R 25592721..25592886 426..261 815 99.4 Minus
3R 32079331 3R 25608969..25609117 150..1 700 99.3 Minus
3R 32079331 3R 25592583..25592661 502..424 365 97.5 Minus
3R 32079331 3R 25608726..25608798 263..191 365 100 Minus
3R 32079331 3R 25608865..25608906 190..149 210 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25332678..25333123 971..525 1910 95.5 Minus
3R 31820162 3R 25332330..25332594 1252..984 1085 94.7 Minus
3R 31820162 3R 25333552..25333717 426..261 815 99.3 Minus
3R 31820162 3R 25349800..25349948 150..1 710 99.3 Minus
3R 31820162 3R 25333414..25333492 502..424 365 97.4 Minus
3R 31820162 3R 25349557..25349629 263..191 365 100 Minus
3R 31820162 3R 25349696..25349737 190..149 210 100 Minus
Blast to na_te.dros performed 2019-03-16 22:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
S2 1735 S2 S2 1735bp 1640..1705 1177..1241 119 72.1 Plus

AT03213.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:39:20 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21414525..21414789 984..1249 97 <- Minus
chr3R 21414844..21415301 526..983 96 <- Minus
chr3R 21415364..21415386 503..525 100 <- Minus
chr3R 21415593..21415668 427..502 100 <- Minus
chr3R 21415732..21415896 262..426 100 <- Minus
chr3R 21431727..21431797 191..261 100 <- Minus
chr3R 21431864..21431903 151..190 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:37:08 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12250-RA 1..420 88..507 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:01 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 1..420 88..507 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:11:44 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 1..420 88..507 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:37 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12250-RA 1..420 88..507 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:52 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 1..420 88..507 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:37:07 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12250-RA 11..974 1..966 97 <- Plus
CG12250-RA 993..1270 967..1249 94   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:01 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 11..974 1..966 97 <- Plus
ymp-RA 993..1270 967..1249 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:44 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 11..974 1..966 97 <- Plus
ymp-RA 993..1270 967..1249 94   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:37 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
CG12250-RA 12..694 1..685 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:52 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
ymp-RA 11..974 1..966 97 <- Plus
ymp-RA 993..1270 967..1249 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:20 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25591502..25591763 984..1249 94 <- Minus
3R 25591818..25591828 973..983 100 <- Minus
3R 25591846..25592291 526..972 95 <- Minus
3R 25592354..25592376 503..525 100 <- Minus
3R 25592583..25592658 427..502 97 <- Minus
3R 25592721..25592885 262..426 99 <- Minus
3R 25608728..25608798 191..261 100 <- Minus
3R 25608865..25608904 151..190 100 <- Minus
3R 25608969..25609117 1..150 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:20 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25591502..25591763 984..1249 94 <- Minus
3R 25591818..25591828 973..983 100 <- Minus
3R 25591846..25592291 526..972 95 <- Minus
3R 25592354..25592376 503..525 100 <- Minus
3R 25592583..25592658 427..502 97 <- Minus
3R 25592721..25592885 262..426 99 <- Minus
3R 25608728..25608798 191..261 100 <- Minus
3R 25608865..25608904 151..190 100 <- Minus
3R 25608969..25609117 1..150 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:39:20 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25591502..25591763 984..1249 94 <- Minus
3R 25591818..25591828 973..983 100 <- Minus
3R 25591846..25592291 526..972 95 <- Minus
3R 25592354..25592376 503..525 100 <- Minus
3R 25592583..25592658 427..502 97 <- Minus
3R 25592721..25592885 262..426 99 <- Minus
3R 25608728..25608798 191..261 100 <- Minus
3R 25608865..25608904 151..190 100 <- Minus
3R 25608969..25609117 1..150 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:44 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21417224..21417485 984..1249 94 <- Minus
arm_3R 21417540..21417550 973..983 100 <- Minus
arm_3R 21417568..21418013 526..972 95 <- Minus
arm_3R 21418076..21418098 503..525 100 <- Minus
arm_3R 21418305..21418380 427..502 97 <- Minus
arm_3R 21418443..21418607 262..426 99 <- Minus
arm_3R 21434450..21434520 191..261 100 <- Minus
arm_3R 21434587..21434626 151..190 100 <- Minus
arm_3R 21434691..21434839 1..150 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:55 Download gff for AT03213.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25332333..25332594 984..1249 94 <- Minus
3R 25332649..25332659 973..983 100 <- Minus
3R 25332677..25333122 526..972 95 <- Minus
3R 25333185..25333207 503..525 100 <- Minus
3R 25333414..25333489 427..502 97 <- Minus
3R 25333552..25333716 262..426 99 <- Minus
3R 25349559..25349629 191..261 100 <- Minus
3R 25349696..25349735 151..190 100 <- Minus
3R 25349800..25349948 1..150 99   Minus

AT03213.hyp Sequence

Translation from 87 to 506

> AT03213.hyp
MALRLTTIALLHRAPLLVVPKLKATPPTRTLLLRKNLVPFLDDDPCVFSK
KAVMHHWGVLPILFITLVGGILKVGAMIRLALVKDDVFFTKDSAYYMYLE
TRKGPWYKQKSRKWGGRDEYDMPPGLLLANQGDVSGPSF*

AT03213.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
ymp-PA 139 CG12250-PA 1..139 1..139 733 100 Plus
ymp-PC 173 CG12250-PC 1..139 1..139 733 100 Plus
ymp-PD 186 CG12250-PD 1..139 1..139 730 99.3 Plus
ymp-PB 146 CG12250-PB 1..140 1..139 438 63.6 Plus

AT03213.pep Sequence

Translation from 87 to 506

> AT03213.pep
MALRLTTIALLHRAPLLVVPKLKATPPTRTLLLRKNLVPFLDDDPCVFSK
KAVMHHWGVLPILFITLVGGILKVGAMIRLALVKDDVFFTKDSAYYMYLE
TRKGPWYKQKSRKWGGRDEYDMPPGLLLANQGDVSGPSF*

AT03213.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17268-PA 89 GF17268-PA 1..78 62..138 166 42.3 Plus
Dana\GF17267-PA 169 GF17267-PA 1..101 1..137 151 31.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12237-PA 156 GG12237-PA 65..144 59..138 388 91.2 Plus
Dere\GG12235-PA 77 GG12235-PA 1..59 1..59 271 88.1 Plus
Dere\GG12236-PA 87 GG12236-PA 1..82 59..139 134 36.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17219-PA 62 GH17219-PA 1..60 78..138 129 50 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
ymp-PA 139 CG12250-PA 1..139 1..139 733 100 Plus
ymp-PC 173 CG12250-PC 1..139 1..139 733 100 Plus
ymp-PD 186 CG12250-PD 1..139 1..139 730 99.3 Plus
ymp-PB 146 CG12250-PB 1..140 1..139 438 63.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10358-PA 98 GI10358-PA 2..80 60..139 151 42 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27370-PA 465 GL27370-PA 7..85 59..138 160 46.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11508-PC 154 GA11508-PC 1..127 1..138 274 45.1 Plus
Dpse\GA11508-PB 170 GA11508-PB 1..127 1..138 272 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10234-PA 725 GM10234-PA 601..719 22..139 355 57.1 Plus
Dsec\GM10236-PA 111 GM10236-PA 1..63 77..139 330 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18188-PA 155 GD18188-PA 1..140 1..139 443 62.9 Plus
Dsim\GD18189-PA 79 GD18189-PA 1..62 77..138 328 98.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14397-PA 101 GK14397-PA 1..84 54..138 141 43 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10686-PA 97 GE10686-PA 1..63 77..139 306 90.5 Plus
Dyak\GE10684-PA 76 GE10684-PA 1..59 1..59 270 88.1 Plus
Dyak\jgw-PA 323 GE10683-PA 1..61 1..58 186 65.6 Plus