Clone AT03227 Report

Search the DGRC for AT03227

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:32
Well:27
Vector:pOTB7
Associated Gene/TranscriptCG13602-RA
Protein status:AT03227.pep: wuzgold
Preliminary Size:501
Sequenced Size:1195

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13602 2002-01-01 Sim4 clustering to Release 2
CG13602 2002-02-22 Blastp of sequenced clone
CG13602 2003-01-01 Sim4 clustering to Release 3
CG13602 2008-04-29 Release 5.5 accounting
CG13602 2008-08-15 Release 5.9 accounting
CG13602 2008-12-18 5.12 accounting

Clone Sequence Records

AT03227.complete Sequence

1195 bp (1195 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084091

> AT03227.complete
GTCGAAACTTAGAAATTGCACAATGGTTGTGGGCGTCTTTCCACTGGCGA
AACTAGCTTTACTTGCCATTAAGCACATTAGCAAGCCCATTGGCAATCTG
ATCAAGCAAACGGCCAAAAAGAATAAGTCATTCAAAACCCTGGTTGTTGC
TCCTCCGGCGAGATGTGAGTACAATCCGTGGAATGCCCACCAGTTATCAT
CATAACCAGTATAATGTTCAGTATACCACGTAATTGATGTGCGCTCCAAG
ATGTGGATGCTGGGACTTGGACAACCTCGTCTAATTCCGCCCCTCACTGA
CGCGATGACTATCCAAATGGGCGGTGATATCCTGGGCGAAATGGTCATCT
TCATTATTGGCGCCACGCTGATTGTAGGCGAGTTCAAAAGGTATGCAAGC
CTCGATTATCTTGAAGAAATCTTGGCTTATTTCAAATATGCTTTTAGGCA
AGCCAAGAATGACAGGTTGAAGCAAGCTGGGAAGTAGGGAAACCTATACG
GCATATTGCAATACAGGGGATTTGGAATGTAACTGAATTGGCCTGGAAAT
CTCAGTCGCCAGTATATTCGTGCTAAATTTTATGTAACGCACAATGGTGA
TTGGTAGTTTTCCAGTTGGAAAAATTTTCATTCATGGCGTGAAACGGATT
AGCAAGCCATTCGGAGACCTTCTGATTTGGATGGGCAAGCATCATCCCTT
TATACGGCGCTACATCATTATTCCGCCTGCCCAGCTCTACAACACCTTTG
AGGTCCGTTCCAAGCTTCGTATGCTTCGATTAAAGCAGCCCAGGCGGATT
CCACCCCTCTCCACTCCGGTCGCCACCAGATTGGGCGCTGATATGCTGAG
TGAGGCTTTTGTGTTTGGCATCGGCGCGGGTCTCATATACTATGAGCTTT
CAAAGTGTGAACTATTACAAATGTCTTAATAATTTGTATTCCTATACAAT
TATTTGTTTTTATAGAACATATACAAAAACCAAAAAACAGAACCAGGAAA
TTGAGGATCAAAAAAGAGTTCTAGATGAGTGCGTGGACTGTATCAGTGCA
GATGTGGAACGGAACCAAAGGGAAATCAACTGGATTAAGGCAGCTCTAAA
AAACGTTGAAAAATAAGGATTTATTTTTGTATAATTTTATTATGTAATAA
ATAAATGAGTAATTTTCAAGTTAAAAAAAAAAAAAAAAAAAAAAA

AT03227.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13602-RA 1159 CG13602-RA 472..1159 485..1172 3425 99.8 Plus
CG13602-RB 1072 CG13602-RB 516..1072 616..1172 2770 99.8 Plus
CG13602-RA 1159 CG13602-RA 1..471 1..471 2355 100 Plus
CG13602.a 1011 CG13602.a 516..804 616..904 1430 99.6 Plus
CG13602.a 1011 CG13602.a 805..1011 966..1172 1035 100 Plus
CG13602-RB 1072 CG13602-RB 165..334 222..391 850 100 Plus
CG13602.a 1011 CG13602.a 165..334 222..391 850 100 Plus
CG13602-RB 1072 CG13602-RB 1..164 1..164 820 100 Plus
CG13602.a 1011 CG13602.a 1..164 1..164 820 100 Plus
CG13602-RB 1072 CG13602-RB 458..515 471..528 290 100 Plus
CG13602.a 1011 CG13602.a 458..515 471..528 290 100 Plus
CG13602-RB 1072 CG13602-RB 332..360 446..474 145 100 Plus
CG13602.a 1011 CG13602.a 332..360 446..474 145 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19751175..19751876 1172..471 3405 99 Minus
chr3R 27901430 chr3R 19751974..19752447 474..1 2355 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:38:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23927728..23928429 1172..471 3495 99.9 Minus
3R 32079331 3R 23928527..23929000 474..1 2370 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23668559..23669260 1172..471 3495 99.8 Minus
3R 31820162 3R 23669358..23669831 474..1 2370 100 Minus
Blast to na_te.dros performed 2019-03-15 21:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 4112..4167 1111..1164 113 69.6 Plus
Cr1a 4470 Cr1a DMCR1A 4470bp 4272..4320 1158..1110 110 69.4 Minus

AT03227.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:23:47 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19751175..19751877 472..1172 93 <- Minus
chr3R 19751977..19752447 1..471 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:50:34 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 1..336 594..929 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:43:39 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 1..336 594..929 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:46:24 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG43998-RB 1..311 594..904 99 == Plus
CG43998-RB 312..462 966..1116 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:12:01 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 1..336 594..929 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:48 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG43998-RB 1..311 594..904 99 == Plus
CG43998-RB 312..462 966..1116 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:15 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 1..1159 1..1172 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:39 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 1..1159 1..1172 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:46:24 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 1..164 1..164 100 == Plus
CG43999-RB 165..334 222..391 100 == Plus
CG43999-RB 335..351 449..465 100 -> Plus
CG43999-RB 452..1159 466..1172 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:12:01 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG13602-RA 1..1159 1..1172 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:48 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
CG43999-RB 1..164 1..164 100 == Plus
CG43999-RB 165..334 222..391 100 == Plus
CG43999-RB 335..351 449..465 100 -> Plus
CG43999-RB 452..1159 466..1172 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:23:47 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23927728..23928430 472..1172 99 <- Minus
3R 23928530..23929000 1..471 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:23:47 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23927728..23928430 472..1172 99 <- Minus
3R 23928530..23929000 1..471 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:23:47 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23927728..23928430 472..1172 99 <- Minus
3R 23928530..23929000 1..471 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:46:24 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19753450..19754152 472..1172 99 <- Minus
arm_3R 19754252..19754722 1..471 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:31 Download gff for AT03227.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23668559..23669261 472..1172 99 <- Minus
3R 23669361..23669831 1..471 100   Minus

AT03227.hyp Sequence

Translation from 593 to 928

> AT03227.hyp
MVIGSFPVGKIFIHGVKRISKPFGDLLIWMGKHHPFIRRYIIIPPAQLYN
TFEVRSKLRMLRLKQPRRIPPLSTPVATRLGADMLSEAFVFGIGAGLIYY
ELSKCELLQMS*

AT03227.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG43998-PD 153 CG43998-PD 1..104 1..104 540 100 Plus
CG43998-PC 153 CG43998-PC 1..104 1..104 540 100 Plus
CG43998-PB 153 CG43998-PB 1..104 1..104 540 100 Plus
CG13601-PA 255 CG13601-PA 1..104 1..104 233 43.3 Plus
CG13601-PB 277 CG13601-PB 1..104 1..104 233 43.3 Plus

AT03227.pep Sequence

Translation from 593 to 928

> AT03227.pep
MVIGSFPVGKIFIHGVKRISKPFGDLLIWMGKHHPFIRRYIIIPPAQLYN
TFEVRSKLRMLRLKQPRRIPPLSTPVATRLGADMLSEAFVFGIGAGLIYY
ELSKCELLQMS*

AT03227.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19900-PA 104 GF19900-PA 1..104 1..104 301 55.8 Plus
Dana\GF17024-PA 148 GF17024-PA 1..104 1..104 239 44.2 Plus
Dana\GF17980-PA 253 GF17980-PA 1..105 1..104 234 42.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12392-PA 111 GG12392-PA 1..110 1..110 532 90 Plus
Dere\GG12393-PA 255 GG12393-PA 1..104 1..104 239 43.3 Plus
Dere\GG12391-PA 166 GG12391-PA 1..104 1..104 225 42.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17511-PA 255 GH17511-PA 1..119 1..111 254 44.5 Plus
Dgri\GH17510-PA 104 GH17510-PA 1..104 1..104 234 45.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG43998-PD 153 CG43998-PD 1..104 1..104 540 100 Plus
CG43998-PC 153 CG43998-PC 1..104 1..104 540 100 Plus
CG43998-PB 153 CG43998-PB 1..104 1..104 540 100 Plus
CG13601-PA 255 CG13601-PA 1..104 1..104 233 43.3 Plus
CG13601-PB 277 CG13601-PB 1..104 1..104 233 43.3 Plus
CG43999-PC 166 CR43999-PC 1..104 1..104 222 42.3 Plus
CG43999-PB 166 CR43999-PB 1..104 1..104 222 42.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10378-PA 251 GI10378-PA 1..104 1..104 252 45.2 Plus
Dmoj\GI16934-PA 155 GI16934-PA 1..103 2..104 233 40.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23344-PA 104 GL23344-PA 1..104 1..104 287 54.8 Plus
Dper\GL23345-PA 131 GL23345-PA 1..105 1..104 233 43.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12395-PB 252 GA12395-PB 149..252 1..104 292 55.8 Plus
Dpse\GA12395-PA 104 GA12395-PA 1..104 1..104 289 55.8 Plus
Dpse\GA12394-PA 254 GA12394-PA 1..120 1..111 236 42.5 Plus
Dpse\GA12395-PB 252 GA12395-PB 1..104 1..104 234 42.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23529-PA 111 GM23529-PA 1..111 1..111 557 95.5 Plus
Dsec\GM23530-PA 253 GM23530-PA 1..104 1..104 239 43.3 Plus
Dsec\GM23528-PA 170 GM23528-PA 1..104 1..104 223 42.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18340-PA 111 GD18340-PA 1..110 1..110 560 97.3 Plus
Dsim\GD18341-PA 255 GD18341-PA 1..104 1..104 239 43.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22840-PA 251 GJ22840-PA 1..104 1..104 257 47.1 Plus
Dvir\GJ22839-PA 103 GJ22839-PA 1..103 2..104 239 44.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22620-PA 104 GK22620-PA 1..104 1..104 283 53.8 Plus
Dwil\GK19115-PA 108 GK19115-PA 10..108 6..104 263 48.5 Plus
Dwil\GK22621-PA 253 GK22621-PA 1..104 1..104 251 44.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23910-PA 153 GE23910-PA 1..104 1..104 517 93.3 Plus
Dyak\GE23911-PA 255 GE23911-PA 1..104 1..104 239 43.3 Plus
Dyak\GE23909-PA 166 GE23909-PA 1..104 1..104 220 41.3 Plus