Clone AT03366 Report

Search the DGRC for AT03366

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:33
Well:66
Vector:pOTB7
Associated Gene/Transcriptps-RJ
Protein status:AT03366.pep: gold
Preliminary Size:290
Sequenced Size:1799

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16776 2002-01-01 Sim4 clustering to Release 2
CG8144 2002-02-26 Blastp of sequenced clone
ps 2008-04-29 Release 5.5 accounting
ps 2008-08-15 Release 5.9 accounting
ps 2008-12-18 5.12 accounting

Clone Sequence Records

AT03366.complete Sequence

1799 bp (1799 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089247

> AT03366.complete
CGTTCATCACAGCAGGCTCTCTCAAATACGTCAAGTGTTAAAATCCCAAA
AAAAAAATATCTACAGAAAATAAAACAAAATTCCAGTGTTGTCTTAATGT
TGCATCAAAAATTTTAAGTTTTATCTCGTGAATTGGAATGCGGAAGCTTT
GTTCGAGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAATAAT
AACAATAATCATATTCATCATGGCGAGACAACGTATCACATGAAAATACT
GGTGCCCGCGGTGGCCTCCGGGGCCATCATTGGCAAAGGTGGCGAGACGA
TCGCCTCCCTGCAGAAGGACACGGGTGCTAGGGTCAAGATGTCCAAGTCG
CACGACTTCTACCCAGGCACCACCGAACGCGTGTGCCTGATCACCGGCTC
CACGGAGGCTATCATGGTCGTGATGGAGTTCATCATGGACAAGATCCGCG
AGAAGCCCGACCTGACCAACAAGATCGTCGATACCGACTCAAAACAGACA
CAGGAGCGCGACAAGCAGGTCAAGATCCTGGTGCCCAACTCGACCGCCGG
CATGATCATTGGCAAGGGCGGTGCCTTCATTAAACAGATCAAGGAGGAGA
GCGGCTCCTATGTCCAGATCTCGCAGAAGCCCACGGATGTGTCGTTGCAG
GAGCGCTGCATCACCATCATAGGCGACAAGGAGAACAATAAGAACGCCTG
CAAGATGATCCTCTCGAAGATCGTCGAAGATCCCCAGTCGGGCACCTGCC
TGAACGTATCCTACGCGGACGTCAGCGGCCCGGTGGCCAACTTTAATCCG
ACCGGCTCCCCGTACGCCACCAATCAGAATGCCATCAACTCGAGCACCGC
TTCGTTGAACTCCACGTTGGGCACCACGATCGGCGGTGCAAACTCGGCGG
CCAGCCTGCTAGTCAACGGCACCGGCATCAATTTGTCCATCAATCTGGGC
TCACCCAATCCGGCGCCCAATCTAGCGGTTGCCACACAGCTGCTCGAGCA
TATTAAGGTTGCCATGCGCGGCTCTGGCTATTCGGAGACCGTAACGAACG
AAGTTGTCGCCGCTCTGAGCGTGCTGGCCAAGTACGGCGTCCTTGGAATG
GGCGTGGGTGTGTCGCACACCAACGGCGCCCACTCAACGCTGGGCAACTT
CCTGGGCGTAACGACGCTGGACCAGCAGACAGCCGCTGCCGCATCTGCGG
CCACCGCCAGCAATGTGTTCGGTGCCGTTGGCCAGGTAAATCTGGAGCAA
TATGCCGCAGCGGTGGCCTCTGCAGCTGCCGCCAGCCGGCCGACGCAGTC
GCAACTGGACGCTGCCGCAGTGCAATTCGATCCATTCCGCCATTTGGGCT
CGGCAACGGCGCCGGCCGCCACGCCCGTCTCACTGAACAACAATAGCTTT
GGATTGACGGCGACCACGGGAACGGCGACCACGGCGCAGCTGGGCGGTCT
AAGCAAGAGTCCCACTCCCGGTGACCTTAGCTCCAAGGACTCGAAAAACG
TCGAGGTGCCGGAAGTGATTATCGGCGCTATCCTAGGTCCGAGCGGTCGT
AGTTTAGTTGAAATTCAACATGTTTCTGGCGCAAATGTGCAAATTTCCAA
AAAGGGCATATTCGCACCTGGCACTAGAAATCGCATTGTAACCATAACTG
GTCAGCCGAGTGCCATTGCCAAAGCGCAATATCTAATTGAACAGAAAATC
AACGAGGAGGAGACAAAGAGGGCGCGACAAATTCCATTAACCACTGTTGT
GAATTAAAATAAAAAAACAAAAAGTACCATAAAAAAAAAAAAAAAAAAA

AT03366.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
ps.at 9414 ps.at 6..1789 1..1782 8840 99.8 Plus
ps-RJ 2563 ps-RJ 6..1789 1..1782 8840 99.8 Plus
ps.au 3357 ps.au 6..1789 1..1782 8840 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5271106..5271752 364..1010 3235 100 Plus
chr3R 27901430 chr3R 5271821..5272353 1006..1538 2665 100 Plus
chr3R 27901430 chr3R 5273481..5273727 1535..1780 1185 99.6 Plus
chr3R 27901430 chr3R 5260118..5260279 1..162 795 99.4 Plus
chr3R 27901430 chr3R 5270897..5271042 222..367 730 100 Plus
chr3R 27901430 chr3R 5269865..5269931 157..223 335 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9445252..9445898 364..1010 3235 100 Plus
3R 32079331 3R 9445967..9446499 1006..1538 2665 100 Plus
3R 32079331 3R 9447627..9447875 1535..1782 1195 99.6 Plus
3R 32079331 3R 9434266..9434428 1..162 750 98.8 Plus
3R 32079331 3R 9445043..9445188 222..367 730 100 Plus
3R 32079331 3R 9444011..9444077 157..223 335 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9186083..9186729 364..1010 3235 100 Plus
3R 31820162 3R 9186798..9187330 1006..1538 2665 100 Plus
3R 31820162 3R 9188458..9188706 1535..1782 1205 99.5 Plus
3R 31820162 3R 9175097..9175259 1..162 760 98.7 Plus
3R 31820162 3R 9185874..9186019 222..367 730 100 Plus
3R 31820162 3R 9184842..9184908 157..223 335 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:13:34 has no hits.

AT03366.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:14:38 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5273483..5273727 1537..1780 99   Plus
chr3R 5260118..5260273 1..156 100 -> Plus
chr3R 5269865..5269930 157..222 100 -> Plus
chr3R 5270898..5271041 223..366 100 -> Plus
chr3R 5271109..5271749 367..1007 100 -> Plus
chr3R 5271823..5272351 1008..1536 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:01:21 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 1..1620 138..1757 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:46 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 1..1620 138..1757 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:39:34 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 1..1620 138..1757 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:46 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 1..1620 138..1757 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:55:16 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 1..1620 138..1757 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:21 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 1..1782 1..1780 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:46 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 1..1782 1..1780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:39:34 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 1..1782 1..1780 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:46 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 1..1782 1..1780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:16 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RJ 1..1782 1..1780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:14:38 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9434266..9434422 1..156 99 -> Plus
3R 9444011..9444076 157..222 100 -> Plus
3R 9445044..9445187 223..366 100 -> Plus
3R 9445255..9445895 367..1007 100 -> Plus
3R 9445969..9446497 1008..1536 100 -> Plus
3R 9447629..9447873 1537..1780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:14:38 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9434266..9434422 1..156 99 -> Plus
3R 9444011..9444076 157..222 100 -> Plus
3R 9445044..9445187 223..366 100 -> Plus
3R 9445255..9445895 367..1007 100 -> Plus
3R 9445969..9446497 1008..1536 100 -> Plus
3R 9447629..9447873 1537..1780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:14:38 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9434266..9434422 1..156 99 -> Plus
3R 9444011..9444076 157..222 100 -> Plus
3R 9445044..9445187 223..366 100 -> Plus
3R 9445255..9445895 367..1007 100 -> Plus
3R 9445969..9446497 1008..1536 100 -> Plus
3R 9447629..9447873 1537..1780 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:39:34 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5259988..5260144 1..156 99 -> Plus
arm_3R 5269733..5269798 157..222 100 -> Plus
arm_3R 5270766..5270909 223..366 100 -> Plus
arm_3R 5270977..5271617 367..1007 100 -> Plus
arm_3R 5271691..5272219 1008..1536 100 -> Plus
arm_3R 5273351..5273595 1537..1780 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:37 Download gff for AT03366.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9186086..9186726 367..1007 100 -> Plus
3R 9186800..9187328 1008..1536 100 -> Plus
3R 9188460..9188704 1537..1780 99   Plus
3R 9175097..9175253 1..156 99 -> Plus
3R 9184842..9184907 157..222 100 -> Plus
3R 9185875..9186018 223..366 100 -> Plus

AT03366.pep Sequence

Translation from 137 to 1756

> AT03366.pep
MRKLCSSESVCSGIEVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGK
GGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVVMEFIM
DKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQ
IKEESGSYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQ
SGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGG
ANSAASLLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSE
TVTNEVVAALSVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAA
AASAATASNVFGAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQFDPF
RHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSK
DSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRI
VTITGQPSAIAKAQYLIEQKINEEETKRARQIPLTTVVN*

AT03366.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17214-PA 532 GF17214-PA 37..510 4..474 2074 93.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16798-PA 572 GG16798-PA 37..572 4..539 2736 97.4 Plus
Dere\GG16232-PA 364 GG16232-PA 1..197 18..216 168 25.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18435-PA 569 GH18435-PA 37..565 4..529 2237 87.1 Plus
Dgri\GH14429-PA 362 GH14429-PA 23..197 32..216 168 26.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
ps-PJ 539 CG16765-PJ 1..539 1..539 2695 100 Plus
ps-PR 780 CG42670-PR 246..780 5..539 2666 99.6 Plus
ps-PT 616 CG42670-PT 82..616 5..539 2666 99.6 Plus
ps-PO 572 CG16765-PO 39..572 6..539 2663 99.8 Plus
ps-PN 572 CG16765-PN 39..572 6..539 2663 99.8 Plus
ps-PH 572 CG16765-PH 39..572 6..539 2663 99.8 Plus
ps-PG 572 CG16765-PG 39..572 6..539 2663 99.8 Plus
ps-PF 572 CG8144-PA 39..572 6..539 2663 99.8 Plus
ps-PD 583 CG8144-PD 52..583 8..539 2659 100 Plus
ps-PM 550 CG16765-PM 28..550 17..539 2556 98.3 Plus
ps-PP 550 CG16765-PP 28..550 17..539 2556 98.3 Plus
ps-PK 550 CG16765-PK 28..550 17..539 2556 98.3 Plus
ps-PS 594 CG42670-PS 60..594 6..539 2546 96.4 Plus
ps-PL 758 CG16765-PL 224..758 6..539 2546 96.4 Plus
ps-PQ 517 CG42670-PQ 1..517 1..539 2539 95.9 Plus
ps-PC 561 CG8144-PC 52..561 30..539 2536 100 Plus
ps-PB 475 CG8144-PB 1..467 1..467 2341 100 Plus
ps-PI 519 CG16765-PI 52..511 8..467 2305 100 Plus
mub-PE 557 CG7437-PE 1..431 18..444 224 24.8 Plus
mub-PF 557 CG7437-PF 1..431 18..444 224 24.8 Plus
mub-PI 539 CG7437-PI 1..413 18..444 217 24.5 Plus
mub-PD 539 CG7437-PD 1..413 18..444 215 24.2 Plus
mub-PA 386 CG7437-PA 1..304 18..310 203 26 Plus
mub-PL 368 CG7437-PL 1..286 18..310 196 25.6 Plus
mub-PC 364 CG7437-PC 1..282 18..310 192 25.4 Plus
mub-PG 359 CG7437-PG 1..277 18..310 190 25.7 Plus
mub-PM 359 CG7437-PM 1..277 18..310 190 25.7 Plus
mub-PK 573 CG7437-PK 1..447 18..444 188 22.5 Plus
mub-PN 415 CG7437-PN 1..197 18..216 178 25.5 Plus
mub-PH 433 CG7437-PH 1..197 18..216 178 25.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24011-PA 574 GI24011-PA 37..574 4..539 2323 87.6 Plus
Dmoj\GI13561-PA 362 GI13561-PA 23..197 32..216 166 26.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13824-PA 554 GL13824-PA 47..554 8..539 2302 90 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30025-PA 570 GA30025-PA 37..570 4..539 2449 93.5 Plus
Dpse\GA30025-PE 548 GA30025-PE 28..548 17..539 2441 92.2 Plus
Dpse\GA30025-PD 576 GA30025-PD 47..576 8..539 2441 94 Plus
Dpse\GA30025-PC 554 GA30025-PC 47..554 30..539 2420 93.7 Plus
Dpse\GA30025-PF 800 GA30025-PF 235..800 4..539 2412 88.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23807-PA 572 GM23807-PA 37..572 4..539 2722 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18616-PA 330 GD18616-PA 56..257 8..209 1072 97.5 Plus
Dsim\GD18616-PA 330 GD18616-PA 241..330 452..539 379 85.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23641-PA 574 GJ23641-PA 37..574 4..539 2366 88.6 Plus
Dvir\GJ11921-PA 589 GJ11921-PA 23..197 32..216 170 26.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10958-PA 578 GK10958-PA 37..578 4..539 2294 90.2 Plus
Dwil\GK10610-PA 363 GK10610-PA 1..197 18..216 167 26 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25952-PA 572 GE25952-PA 37..572 4..539 2727 96.8 Plus
Dyak\GE22592-PA 364 GE22592-PA 1..197 18..216 168 25.5 Plus

AT03366.hyp Sequence

Translation from 137 to 1756

> AT03366.hyp
MRKLCSSESVCSGIEVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGK
GGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVVMEFIM
DKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQ
IKEESGSYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQ
SGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGG
ANSAASLLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSE
TVTNEVVAALSVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAA
AASAATASNVFGAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQFDPF
RHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSK
DSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRI
VTITGQPSAIAKAQYLIEQKINEEETKRARQIPLTTVVN*

AT03366.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
ps-PJ 539 CG16765-PJ 1..539 1..539 2695 100 Plus
ps-PR 780 CG42670-PR 246..780 5..539 2666 99.6 Plus
ps-PT 616 CG42670-PT 82..616 5..539 2666 99.6 Plus
ps-PO 572 CG16765-PO 39..572 6..539 2663 99.8 Plus
ps-PN 572 CG16765-PN 39..572 6..539 2663 99.8 Plus