Clone AT03386 Report

Search the DGRC for AT03386

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:33
Well:86
Vector:pOTB7
Associated Gene/TranscriptCG7841-RA
Protein status:AT03386.pep: gold
Preliminary Size:599
Sequenced Size:1421

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7841 2002-01-01 Sim4 clustering to Release 2
CG7841 2002-02-22 Blastp of sequenced clone
CG7841 2003-01-01 Sim4 clustering to Release 3
CG7841 2008-04-29 Release 5.5 accounting
CG7841 2008-08-15 Release 5.9 accounting
CG7841 2008-12-18 5.12 accounting

Clone Sequence Records

AT03386.complete Sequence

1421 bp (1421 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084095

> AT03386.complete
CCTCGTGCCGAACATACGGCTCTTTGCGGGTGTCTCTCTTAACATTTCGT
TATGCGATTTGAATGGGGCAGTTGCATTGGAGCCTCGTCCGCCGAACACA
GAACATTACAAACGCGTTTCCAGGAGTAATTGTCGGTGATTTTAATCGAA
AACAATTGATACGAGCGCGGTGCGGCAGCCATCAAAATCAAAGAGTGCTA
AATCGGAATCACTGCCCTAAGTGAAGTGTATTGTGTAACCTTTTGAGACG
ATGACAATAGGCCAAAAGGAGGCGGCGTGGGGCAGGCTGGGCTGCCAATG
ATCATATGATTGCCTAGAGCGGAAAAATACTCAAAATCATAGCAGTCCGC
TAGGCATTTCGTTGCCAGAAACGAAAACAACAATACGTAAATCGAAAGGA
CAAGGTATATTTTCAGCCGGTACTCCCCATCTCCCCACCACCATGTACAC
AATCAACAAGGGACCTAGCAAAATTGTTGCTAAAACGCGTCGCGGCCTGG
CACCAAATTTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGCAAGAAC
GCTAGTTTCGATCTGAACAGTCCCGAGGAGCACAAAAACATACCGCGTCC
GGTGTTTCAACAGAGCTTCGCCACCAAGCGGATAACGCCAACCAAACTGA
TCGAGGATGAGGTGATAACGCCGCAACATGAGGAAATAATACGTTACATA
AATGACTCCTGGAACATGCTGGTGGCGCAGAATCCCTACGACTCGAGCTC
ATCCGCCAAGCCTGTTGAGAAACCTGTAGCGGATGCCAACAACAACAGCG
CCGCCAGTCCAGTGGAAAGCATAATGGCCAACAGCCCAGTGCCCGCTGCC
TCAACAGCCACTGTCTGGGTGGAACCACCGAGTCCAGCGCTACAGGACTT
CAAGCCCTTCGACCTGGAGTCGTGGTGGGGACGTCGCCTCTTCCAGAACA
TAACCAAAAGCCTGTAGGACCGATCGCATGGGATCGAATGAGTGGCAGAG
CCTGATCTTTGTCAATTCCTAGATAGTCAGTGCTTCCTTCTGTGCATGTA
CGTTCGACTGGACATGGGCAAAATCACACTAGATGATAGTGGGCGAAACG
AGACGTGACGAGAGACTTGCTTAGTTTTCGGCTAGCGACTAAGTAAATAT
CACTTTGGATGTTAGTGGTTGGGAGGCCACCGTGGTGGCAAATCTTGGCA
TAGGTTCATCTCGCATATAAGTGTGTATATGAAGTAAATTGAGAGTCGTC
GCCGTTGGCCAATGTAAATAATACGATTTCTGATTTACAATTAAGAATGT
GAAACGTGTCATCTGGATGGCTTGCCATTTTTTTTTTTAATGTCAACAAC
ACTCATGTGAATTGTATAAAGTATAAGGTTCAAACTAACATCAATTTAAT
TGCAAAAAAAAAAAAAAAAAA

AT03386.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-RA 1970 CG7841-RA 313..1603 11..1301 6395 99.6 Plus
CG7841-RA 1970 CG7841-RA 1618..1721 1301..1405 485 99 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15495391..15496100 1403..708 3200 97.3 Minus
chr3L 24539361 chr3L 15497750..15498234 495..11 2395 99.6 Minus
chr3L 24539361 chr3L 15496179..15496297 707..589 595 100 Minus
chr3L 24539361 chr3L 15497425..15497519 588..494 475 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15505437..15506148 1405..708 3210 97.3 Minus
3L 28110227 3L 15507798..15508282 495..11 2410 99.8 Minus
3L 28110227 3L 15506227..15506345 707..589 595 100 Minus
3L 28110227 3L 15507473..15507567 588..494 475 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15498655..15499248 1301..708 2925 99.4 Minus
3L 28103327 3L 15500898..15501382 495..11 2410 99.7 Minus
3L 28103327 3L 15499327..15499445 707..589 595 100 Minus
3L 28103327 3L 15498537..15498640 1405..1301 485 99 Minus
3L 28103327 3L 15500573..15500667 588..494 475 100 Minus
Blast to na_te.dros performed 2019-03-15 23:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6335..6393 783..842 117 68.3 Plus

AT03386.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:24:19 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15497751..15498240 4..494 98   Minus
chr3L 15495391..15495491 1301..1403 98 <- Minus
chr3L 15495508..15496100 708..1300 99 <- Minus
chr3L 15496179..15496297 589..707 100 <- Minus
chr3L 15497425..15497518 495..588 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:50:57 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 1..525 443..967 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:43:43 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 1..525 443..967 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:40:13 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 1..525 443..967 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:12:03 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 1..525 443..967 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:55 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 1..525 443..967 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:18 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 2..1296 7..1300 99 -> Plus
CG7841-RA 1313..1413 1301..1403 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:43 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 2..1296 7..1300 99 -> Plus
CG7841-RA 1313..1413 1301..1403 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:40:13 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 1..1260 41..1300 99 -> Plus
CG7841-RA 1277..1377 1301..1403 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:12:03 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 2..1296 7..1300 99 -> Plus
CG7841-RA 1313..1413 1301..1403 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:55 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
CG7841-RA 1..1260 41..1300 99 -> Plus
CG7841-RA 1277..1377 1301..1403 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:19 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15505439..15505539 1301..1403 98 <- Minus
3L 15505556..15506148 708..1300 99 <- Minus
3L 15506227..15506345 589..707 100 <- Minus
3L 15507473..15507566 495..588 100 <- Minus
3L 15507799..15508288 4..494 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:19 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15505439..15505539 1301..1403 98 <- Minus
3L 15505556..15506148 708..1300 99 <- Minus
3L 15506227..15506345 589..707 100 <- Minus
3L 15507473..15507566 495..588 100 <- Minus
3L 15507799..15508288 4..494 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:19 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15505439..15505539 1301..1403 98 <- Minus
3L 15505556..15506148 708..1300 99 <- Minus
3L 15506227..15506345 589..707 100 <- Minus
3L 15507473..15507566 495..588 100 <- Minus
3L 15507799..15508288 4..494 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:40:13 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15498539..15498639 1301..1403 98 <- Minus
arm_3L 15498656..15499248 708..1300 99 <- Minus
arm_3L 15499327..15499445 589..707 100 <- Minus
arm_3L 15500573..15500666 495..588 100 <- Minus
arm_3L 15500899..15501388 4..494 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:34 Download gff for AT03386.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15498656..15499248 708..1300 99 <- Minus
3L 15499327..15499445 589..707 100 <- Minus
3L 15500573..15500666 495..588 100 <- Minus
3L 15500899..15501388 4..494 99   Minus
3L 15498539..15498639 1301..1403 98 <- Minus

AT03386.pep Sequence

Translation from 442 to 966

> AT03386.pep
MYTINKGPSKIVAKTRRGLAPNFEKFESIKESGRKNASFDLNSPEEHKNI
PRPVFQQSFATKRITPTKLIEDEVITPQHEEIIRYINDSWNMLVAQNPYD
SSSSAKPVEKPVADANNNSAASPVESIMANSPVPAASTATVWVEPPSPAL
QDFKPFDLESWWGRRLFQNITKSL*

AT03386.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10731-PA 175 GF10731-PA 1..175 1..174 834 92 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13548-PA 174 GG13548-PA 1..174 1..174 884 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17022-PA 181 GH17022-PA 1..181 1..174 696 77.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-PB 174 CG7841-PB 1..174 1..174 908 100 Plus
CG7841-PA 174 CG7841-PA 1..174 1..174 908 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12227-PA 180 GI12227-PA 1..180 1..174 704 77 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25627-PA 174 GL25627-PA 1..174 1..174 736 86.3 Plus
Dper\GL23217-PA 161 GL23217-PA 1..161 1..174 490 55.2 Plus
Dper\GL20951-PA 163 GL20951-PA 1..163 1..174 336 47.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20624-PA 174 GA20624-PA 1..174 1..174 736 86.3 Plus
Dpse\GA27194-PA 161 GA27194-PA 1..161 1..174 471 53.4 Plus
Dpse\GA28641-PA 163 GA28641-PA 1..163 1..174 362 47.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24490-PA 174 GM24490-PA 1..174 1..174 895 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12561-PA 174 GD12561-PA 1..174 1..174 895 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11457-PA 180 GJ11457-PA 1..180 1..174 690 79.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10523-PA 175 GK10523-PA 1..175 1..174 707 83.6 Plus
Dwil\GK22726-PA 173 GK22726-PA 1..173 1..174 365 44.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19849-PA 174 GE19849-PA 1..174 1..174 890 97.1 Plus
Dyak\GE22847-PA 174 GE22847-PA 1..174 1..174 888 97.1 Plus

AT03386.hyp Sequence

Translation from 442 to 966

> AT03386.hyp
MYTINKGPSKIVAKTRRGLAPNFEKFESIKESGRKNASFDLNSPEEHKNI
PRPVFQQSFATKRITPTKLIEDEVITPQHEEIIRYINDSWNMLVAQNPYD
SSSSAKPVEKPVADANNNSAASPVESIMANSPVPAASTATVWVEPPSPAL
QDFKPFDLESWWGRRLFQNITKSL*

AT03386.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7841-PB 174 CG7841-PB 1..174 1..174 908 100 Plus
CG7841-PA 174 CG7841-PA 1..174 1..174 908 100 Plus