Clone AT03475 Report

Search the DGRC for AT03475

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:34
Well:75
Vector:pOTB7
Associated Gene/Transcripthubl-RA
Protein status:AT03475.pep: gold
Sequenced Size:2672

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30364-RA 2010-07-22 Manual selection by Sue Celniker

Clone Sequence Records

AT03475.complete Sequence

2672 bp assembled on 2011-01-03

GenBank Submission: BT126098.1

> AT03475.complete
CCTCGTGCCGCTCAAATTTAAGTTCACCAGCCATGCTCAACTCTTTGGCC
AAGAGAATTGTGCTTATGCCCAGCCTTATAGCACTGGAGGATACTTGTCG
AACTATTCACGTTACCGCCCTAATGGCGAGGATGGGAAAGGATTTCTGTC
CCGTGAGTGAGGTTCCCGACTGCAAAGTGGTGAAGAAGCGACCGTGCAGT
CCCACGGATCCACCTGTTCGTCCTTGCAGCGAGGAGGGCTGCACCCAGCC
GCGATACTCATGTTGCGTGAGTACCGGCATTTCGGCGAATCCATGCGCTG
ATCCAAGCAAGAAGACCAAGTTCGTTTCGATGTGGAAGAGATACAAGGAT
GATGGTAGTAATCGGCCAGAAGCTATGTGGCACTACCCGGAGGAGTGCTG
TCCAAAGTGTGAGGATACGCGATTTGACGTTTTGTACTATACACCGTCGG
ACAAGTGCCGGGAGTTCCAGCGCACCTGGTGGGAATGCTGTCCAAAAATG
GTACCGAAGCGGGTCTGCTGCTGGTGCGACGCCATTCCACCGGAGGTCCT
GCGGCGAGATTTGCCCATCTGCCCGCGATCCGCTTGTCTCGCAGAACATG
AGAGGAAGCGCTATAAGTGCCTAAACAAAAGGTACAAAGGTTGCATGCGT
ATCCGTATGCCGTGTTGTCGAACCGCTCGAATACCGCCCGACTGCAGGGC
ATTCCCCGGTCCTTCCGATTGCGAGAAGATCAAGTGCCCGTTCCCGAGTT
ACTCCGAATGCGTTCAGGAGGATCCCGCTGTTATCCCAACCCGGCCACCA
GAGTGTGAGTGCTTGAAAAAGGCGTCTCAGTGCGAGCAGATCCGACGAGG
ACGGCACATGGAAAACAACGACATAAGCATCTGGCCGTGTACTTCCAGGG
GAAGATGAAGACCGTATCCCAGGGTTATAGTAACTGGGGTCTTCGCTGGA
ATTTTTGTAACACAAAATGTAACAAAAATTCCAACAGAGACCAAAGTCCT
GAACGGCAAGCCCTTCACCAGAAATCATAAACTTATATAAACGTATATTT
ATGATTTCTGGTGGTATCCCTGTGGAATCCCTATCCCAGCAACCCAACTG
AAAATCTGTCAGTTGAGGTACATCTAATATCTCATTCAATTGGCATCCGG
CACCCTGTTTAAAATTCAAAATTCTAGGCCTCGTTCAAAATTAAAACATG
CCTCGCCTCTCGGTTTTCTGCGGATTATCGCGTAGAATCATCTGCTCCAG
CACTGCTCACCGAAACCTTTGGCGACTGTTGTCCGACAGTTCGGAGTCGA
CCATTATCCCACACGTTTCGGACAAAACGGAAAGTGTGAAGAAATTCAAA
AAGGAAACGCAGGTGGATCACACAAGTCACCTATTTGTATGGCCGGAGGC
GAAGGACGAAAACGTTCATCATGTGAAAGAGAACAAAGAGGATAGCAATG
ACGATATAACTGCATCCTGGGGCTGGAAAAATGACGAGCTTGACGTGGAG
CAATTGGCAGGACTACCAAGTCCTAATGAGGTGGAGGATCCATACCGGCA
GCCAAACAATGAATCTCAGGATGATCAGTTGCCATTCGCTGAAGGAGACC
AATCAGGAATTCAAGAAGAATTACAATTCGCAAGAACGCGCTCCCTGCGA
GAACAGCTTGTCAAGAATCAGGCGTCCCAAGAACCTTTTACCAGCTTTGA
GAAAACATCTCTCACATCCGTTCGAAGGAATGTGGACTTCATGATGCAAG
AGCTTAGTCAGATTTCACTTATTTTGAATACTATGGGAGGAGGTGAAAAA
ACAATGGGGATGGTTAACTCTGAACCGGATGTGGCTTCCTTTGCACTCAA
CCAACCCAACATCAGTGAAAGTTTGAATCATGAGGAGGAATCAAATCAGT
CAGTGGATAGAGCTAGTTCCCATCAATCTGAGCTAGGTGTTGCAGATTCT
ATGCATTCGGAGGTAGCCAGTGCGCTCTCAGAACCATCTGGATTGGGTGA
TGTAGAGAGCCTAGATCATAGCGAGATTTCGAACCAGTCTTTTGATTCCG
AACTAACGAGGGATATCACCGATCAACTTAAATTGGATCACGAGATGGAA
GCAAATCAGTCTTTGGATTCTGAGTTAACCGGTGAAATAACTAATCAATC
TAGTTCGGTAGTTTCAGAGTCTTCGATTTCCGATGAGGACTTCGGGGAGG
AGCTAATAAAACAATCTCACAAAATCGAGCAAATTGCGTCTGCTGGCGAT
ACTCAAGAGTCCAGTCCTTCAAAAACCAATGAGAATACTCCCAAGACTGA
TGACACGCAGGACACTCAGCCTAAGGAAACCATACACACCTACAGGCCCT
TTAGGACTATCGAAGTTCCTGCCAAGAAGCCTACTAGTAGCCTTAGCACC
GAGTCAAATGAAGAGCAGCCGTTGAACCAGGAACCCCAATTCGGCACAGG
TATCCATTTAGATAGAGAAGGGTACAAAGTTTCTGCTCAGCTGACCGAGT
CCGAGTCCCGCTTACTTATGCGCATGGCTCTGAAGCAGGCTTTAATCGAT
CTGGAGTCTGGCCAAAGCAAGTACAAAGCAACAATTCTGGAGGCTGAAAC
CGAGTAATACAAGAGCACCAATGACCAAAGAAATAAACATAACCTTTAAA
ACTTAAAAAAAAAAAAAAAAAA

AT03475.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4246989..4249644 2654..11 12925 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8359465..8362121 2655..11 12930 99.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8360664..8362256 2655..1063 7905 99.7 Minus
2R 25260384 2R 8362261..8363320 1065..11 5155 99.2 Minus
Blast to na_te.dros performed on 2019-03-17 01:25:05 has no hits.

AT03475.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:25:54 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4246989..4249644 11..2654 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-05 09:01:21 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
spaw-RA 1..1410 1198..2607 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:38:49 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
spaw-RA 1..1410 1198..2607 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:58:03 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
spaw-RA 1..1410 1198..2607 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 09:01:21 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
spaw-RA 1..1552 1103..2654 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:38:49 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
spaw-RB 36..2691 11..2654 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:58:03 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
hubl-RB 36..2691 11..2654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:25:54 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8359466..8362121 11..2654 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:25:54 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8359466..8362121 11..2654 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:25:54 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8359466..8362121 11..2654 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:38:49 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4246971..4249626 11..2654 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:54:12 Download gff for AT03475.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8360665..8363320 11..2654 99   Minus

AT03475.pep Sequence

Translation from 2 to 907

> AT03475.pep
SCRSNLSSPAMLNSLAKRIVLMPSLIALEDTCRTIHVTALMARMGKDFCP
VSEVPDCKVVKKRPCSPTDPPVRPCSEEGCTQPRYSCCVSTGISANPCAD
PSKKTKFVSMWKRYKDDGSNRPEAMWHYPEECCPKCEDTRFDVLYYTPSD
KCREFQRTWWECCPKMVPKRVCCWCDAIPPEVLRRDLPICPRSACLAEHE
RKRYKCLNKRYKGCMRIRMPCCRTARIPPDCRAFPGPSDCEKIKCPFPSY
SECVQEDPAVIPTRPPECECLKKASQCEQIRRGRHMENNDISIWPCTSRG
R*

AT03475.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12596-PA 309 GF12596-PA 1..299 11..296 807 55.2 Plus
Dana\GF19809-PA 280 GF19809-PA 72..277 87..291 248 35.8 Plus
Dana\GF20746-PA 237 GF20746-PA 86..219 138..278 158 35 Plus
Dana\GF12592-PA 303 GF12592-PA 122..281 121..278 154 35 Plus
Dana\GF12351-PA 301 GF12351-PA 69..247 96..289 151 31.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10654-PA 291 GG10654-PA 1..290 11..300 1308 85.5 Plus
Dere\GG10652-PA 281 GG10652-PA 81..280 86..283 191 32.5 Plus
Dere\GG11285-PA 232 GG11285-PA 68..219 123..278 179 35.6 Plus
Dere\GG10647-PA 303 GG10647-PA 121..281 119..278 176 38.7 Plus
Dere\GG23352-PA 244 GG23352-PA 52..233 98..289 157 31.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21087-PA 300 GH21087-PA 45..282 49..282 639 55.6 Plus
Dgri\GH20820-PA 223 GH20820-PA 10..217 78..288 221 34.7 Plus
Dgri\GH20816-PA 242 GH20816-PA 78..238 130..296 186 34.1 Plus
Dgri\GH19654-PA 242 GH19654-PA 78..238 130..296 186 34.1 Plus
Dgri\GH20817-PA 240 GH20817-PA 89..218 138..278 174 37.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
hubl-PB 291 CG30364-PB 1..291 11..301 1676 100 Plus
hubl-PA 291 CG30364-PA 1..291 11..301 1676 100 Plus
swif-PB 284 CG30366-PB 37..279 64..282 293 31 Plus
swif-PA 284 CG30366-PA 37..279 64..282 293 31 Plus
CG2127-PB 289 CG2127-PB 51..267 76..278 258 33.6 Plus
CG2127-PA 305 CG2127-PA 67..283 76..278 258 33.6 Plus
CG33340-PA 229 CG33340-PA 28..216 79..278 244 32.9 Plus
CG11635-PA 286 CG11635-PA 23..244 63..289 220 32.9 Plus
CG8701-PA 246 CG8701-PA 34..235 83..289 215 32.6 Plus
CG4691-PA 262 CG4691-PA 114..258 142..284 200 38.7 Plus
CG12861-PA 239 CG12861-PA 56..236 119..285 188 32.6 Plus
boly-PA 255 CG30362-PA 108..244 142..277 177 33.6 Plus
cola-PA 259 CG30363-PA 96..226 140..278 172 37.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18687-PA 297 GI18687-PA 23..278 35..281 492 44.8 Plus
Dmoj\GI20912-PA 250 GI20912-PA 92..228 138..278 230 43.4 Plus
Dmoj\GI20909-PA 248 GI20909-PA 73..244 125..296 222 39.9 Plus
Dmoj\GI20917-PA 296 GI20917-PA 87..281 87..281 198 36.9 Plus
Dmoj\GI10075-PA 236 GI10075-PA 46..221 96..278 173 32.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10871-PA 159 GL10871-PA 12..156 121..296 308 44.3 Plus
Dper\GL10866-PA 259 GL10866-PA 99..237 139..278 219 39.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15791-PA 159 GA15791-PA 12..156 121..296 328 46 Plus
Dpse\GA15259-PA 259 GA15259-PA 99..237 139..278 219 39.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20699-PA 291 GM20699-PA 1..290 11..300 1464 96.6 Plus
Dsec\GM20697-PA 285 GM20697-PA 37..279 64..282 212 32.4 Plus
Dsec\GM20692-PA 305 GM20692-PA 121..283 119..278 175 36.1 Plus
Dsec\GM26593-PA 232 GM26593-PA 68..219 123..278 174 35.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15282-PA 291 GD15282-PA 1..290 11..300 1462 96.2 Plus
Dsim\GD15283-PA 291 GD15283-PA 1..290 11..300 1461 96.2 Plus
Dsim\GD15280-PA 285 GD15280-PA 37..279 64..282 212 32.4 Plus
Dsim\GD15275-PA 305 GD15275-PA 121..283 119..278 182 36.7 Plus
Dsim\GD21095-PA 232 GD21095-PA 68..219 123..278 174 35.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21704-PA 303 GJ21704-PA 45..290 49..287 641 55 Plus
Dvir\GJ20641-PA 249 GJ20641-PA 76..227 124..278 207 40.1 Plus
Dvir\GJ20648-PA 301 GJ20648-PA 132..256 134..252 196 39.2 Plus
Dvir\GJ20639-PA 249 GJ20639-PA 88..245 133..296 179 35.9 Plus
Dvir\GJ23810-PA 238 GJ23810-PA 89..223 138..278 158 35.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15761-PA 301 GK15761-PA 6..297 10..296 783 56.3 Plus
Dwil\GK19093-PA 213 GK19093-PA 8..213 86..293 243 38 Plus
Dwil\GK15825-PA 289 GK15825-PA 56..267 65..278 180 31.7 Plus
Dwil\GK19110-PA 237 GK19110-PA 70..222 123..278 169 35.4 Plus
Dwil\GK15824-PA 256 GK15824-PA 57..233 106..280 169 34.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23134-PA 291 GE23134-PA 1..290 11..300 1333 87.9 Plus
Dyak\GE23113-PA 284 GE23113-PA 81..284 86..291 207 33.5 Plus
Dyak\GE23478-PA 232 GE23478-PA 56..219 99..278 187 34.8 Plus
Dyak\GE23064-PA 307 GE23064-PA 123..285 119..278 181 38.6 Plus
Dyak\GE19192-PA 245 GE19192-PA 64..235 115..289 165 34.8 Plus

AT03475.hyp Sequence

Translation from 1197 to 2606

> AT03475.hyp
MPRLSVFCGLSRRIICSSTAHRNLWRLLSDSSESTIIPHVSDKTESVKKF
KKETQVDHTSHLFVWPEAKDENVHHVKENKEDSNDDITASWGWKNDELDV
EQLAGLPSPNEVEDPYRQPNNESQDDQLPFAEGDQSGIQEELQFARTRSL
REQLVKNQASQEPFTSFEKTSLTSVRRNVDFMMQELSQISLILNTMGGGE
KTMGMVNSEPDVASFALNQPKISESLNHEEESNQSVDRASSHQSELGVAD
SMHSEVASALSEPSGLGDVESLDHSEISNQSFDSELTRDITDQLKLDHEM
EANQSLDSELTGEITNQSSSVVSESSISDEDFGEELIKQSHKIEQIASAG
DTQESSPSKTNENTPKTDDTQDTQPKETIHTYRPFRTIEVPAKKPTSSLS
TESIEEQPLNQEPQFGTGIHLDRERYKVSAQLTESESRLLMRMALKQALI
DLESGQSKYKATILEAETE*

AT03475.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
spaw-PB 469 CG30365-PB 1..469 1..469 2381 100 Plus
spaw-PA 469 CG30365-PA 1..469 1..469 2381 100 Plus