Clone AT03573 Report

Search the DGRC for AT03573

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:35
Well:73
Vector:pOTB7
Associated Gene/Transcriptlectin-46Cb-RB
Protein status:AT03573.pep: gold
Preliminary Size:973
Sequenced Size:1057

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1652 2002-01-01 Sim4 clustering to Release 2
CG1652 2002-02-22 Blastp of sequenced clone
CG1652 2003-01-01 Sim4 clustering to Release 3
lectin-46Cb 2008-04-29 Release 5.5 accounting
lectin-46Cb 2008-08-15 Release 5.9 accounting
lectin-46Cb 2008-12-18 5.12 accounting

Clone Sequence Records

AT03573.complete Sequence

1057 bp (1057 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089249

> AT03573.complete
GCGAAATGAAGCATCTCCTGACTGCACTCGTGGCCCTGCTGAGCATCCTG
CCGCGGGGCGAGCTCCTGGGATCAGGACCCCCCTGCCCGCGTCGCTATTT
GCGCAGGATCAACGGCAAGTGCTACTACTTTTCGGTGAAAAAGATGAACT
GGTTTGGCGCCCTGAACAACTGCCTACGCAAAGGACTGACCCTGGCAGAC
TTGAGCAACCAAAGGGACTTCGACGGAGCCATTGGGTTCCTGAGTGGCCT
GGGCAACACGGAGGATTTCTGGTTCGGGGGCAACGATCTGTATCACGAGG
GTCGTTTCCAGTACATCAGCAACGGTCGGTTGGTGCGCTACTACAGCAAC
TATAGCAACGTCCTGCCACTGGAGCACTCCGAGTGCGACGACTGCCTGGA
GGTGAGGATCCGCTCCGAGATCAACATGGTGTCGGCAGACAACTGCCACG
AGCGGCAATACTTCATCTGCTCGGAACGCTACTGCCAGGGCACGGATAGT
GGCAAGAAGCCGAAGCACCACAGTCACGAGCACTTGCATCACTTCCACCA
CGACATTGGCGGAAGTGCCGAAGGAGAGGACGATGGCGATGGCGATGGCG
ACCACGACCGCCAGGACCCCATTGCCAGTGGCTCAGTGGAGCACCCGGAG
CCGGACTCGGAGGATGCAGTCGGGGCGCTCGACGTGCCCGATGACGATCA
ACCTGGTCAGAATGGCGTCTCGGTGACACCGGGAGCGGAAGAAACAAATA
CCGTTGGCGGAACTGGTGAGCCGGGCGCAACTGCCACCCCTGCCGCCGGA
GCTGAAGCTGTTTCTCCAGCAGCAGAAGGAGCCGCACCCGCCGGAGCAGC
TCCAGCTGCCGAAGGTGCCGCCACTCCTGCCGCCGACGGAGCCACGCCCG
CACCCACTCCCGCGCCAGGAGCAGAAGCACCCGCCGCCGCAGCAGCCGAG
ACTCCGGCACCGCCAGCAGCCTGATCTCCACAACTTGCCCAGCTGAAGCC
CACAACTATTATCGATTAAAAATAAATGACAGCAATAATAAAAAAAAAAA
AAAAAAA

AT03573.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Cb-RB 1520 lectin-46Cb-RB 359..1398 1..1040 5140 99.6 Plus
lectin-46Cb-RA 1472 lectin-46Cb-RA 434..1472 1..1039 5135 99.6 Plus
lectin-46Ca-RA 1206 lectin-46Ca-RA 558..593 519..554 165 97.2 Plus
lectin-46Ca-RA 1206 lectin-46Ca-RA 168..230 138..200 165 84.1 Plus
lectin-46Ca-RA 1206 lectin-46Ca-RA 297..371 267..341 165 81.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5703163..5704060 142..1039 4445 99.7 Plus
chr2R 21145070 chr2R 5702970..5703112 1..143 715 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9815703..9816601 142..1040 4435 99.6 Plus
2R 25286936 2R 9815510..9815652 1..143 715 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9816902..9817800 142..1040 4435 99.5 Plus
2R 25260384 2R 9816709..9816851 1..143 715 100 Plus
2R 25260384 2R 9819187..9819222 519..554 165 97.2 Plus
2R 25260384 2R 9818926..9819000 267..341 165 81.3 Plus
2R 25260384 2R 9818801..9818859 142..200 145 83 Plus
Blast to na_te.dros performed 2019-03-16 15:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1048..1163 805..922 135 59.7 Plus

AT03573.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:50:23 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5702970..5703112 1..143 100 -> Plus
chr2R 5703165..5704060 144..1039 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:51:10 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RA 1..969 6..974 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:43:46 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 1..969 6..974 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:55:06 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 1..969 6..974 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:12:04 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RA 1..969 6..974 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:54:45 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 1..969 6..974 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:20 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RA 434..1472 1..1039 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:46 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 1..1039 1..1039 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:55:06 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 1..1039 1..1039 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:12:04 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RA 434..1472 1..1039 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:54:45 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Cb-RB 1..1039 1..1039 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:23 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9815510..9815652 1..143 100 -> Plus
2R 9815705..9816600 144..1039 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:23 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9815510..9815652 1..143 100 -> Plus
2R 9815705..9816600 144..1039 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:23 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9815510..9815652 1..143 100 -> Plus
2R 9815705..9816600 144..1039 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:55:06 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5703015..5703157 1..143 100 -> Plus
arm_2R 5703210..5704105 144..1039 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:35 Download gff for AT03573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9816904..9817799 144..1039 99   Plus
2R 9816709..9816851 1..143 100 -> Plus

AT03573.hyp Sequence

Translation from 2 to 973

> AT03573.hyp
EMKHLLTALVALLSILPRGELLGSGPPCPRRYLRRINGKCYYFSVKKMNW
FGALNNCLRKGLTLADLSNQRDFDGAIGFLSGLGNTEDFWFGGNDLYHEG
RFQYISNGRLVRYYSNYSNVLPLEHSECDDCLEVRIRSEINMVSADNCHE
RQYFICSERYCQGTDSGKKPKHHSHEHLHHFHHDIGGSAEGEDDGDGDGD
HDRQDPIASGSVEHPEPDSEDAVGALDVPDDDQPGQNGVSVTPGAEETNT
VGGTGEPGATATPAAGAEAVSPAAEGAAPAGAAPAAEGAATPAADGATPA
PTPAPGAEAPAAAAAETPAPPAA*

AT03573.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Cb-PB 322 CG1652-PB 1..322 2..323 1744 100 Plus
lectin-46Ca-PA 328 CG1656-PA 31..328 27..314 613 46.9 Plus
Tm1-PF 501 CG4898-PF 329..474 187..323 161 37.1 Plus
CG12111-PB 188 CG12111-PB 50..173 35..156 150 29.4 Plus
CG12111-PA 188 CG12111-PA 50..173 35..156 150 29.4 Plus

AT03573.pep Sequence

Translation from 5 to 973

> AT03573.pep
MKHLLTALVALLSILPRGELLGSGPPCPRRYLRRINGKCYYFSVKKMNWF
GALNNCLRKGLTLADLSNQRDFDGAIGFLSGLGNTEDFWFGGNDLYHEGR
FQYISNGRLVRYYSNYSNVLPLEHSECDDCLEVRIRSEINMVSADNCHER
QYFICSERYCQGTDSGKKPKHHSHEHLHHFHHDIGGSAEGEDDGDGDGDH
DRQDPIASGSVEHPEPDSEDAVGALDVPDDDQPGQNGVSVTPGAEETNTV
GGTGEPGATATPAAGAEAVSPAAEGAAPAGAAPAAEGAATPAADGATPAP
TPAPGAEAPAAAAAETPAPPAA*

AT03573.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13387-PA 298 GF13387-PA 1..290 1..315 892 63.2 Plus
Dana\GF13388-PA 323 GF13388-PA 40..176 26..160 444 56.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24104-PA 321 GG24104-PA 1..244 1..245 1094 91.4 Plus
Dere\GG24105-PA 326 GG24105-PA 31..162 26..157 416 52.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Cb-PB 322 CG1652-PB 1..322 1..322 1744 100 Plus
lectin-46Ca-PA 328 CG1656-PA 31..328 26..313 613 46.9 Plus
Tm1-PF 501 CG4898-PF 329..474 186..322 161 37.1 Plus
CG12111-PB 188 CG12111-PB 50..173 34..155 150 29.4 Plus
CG12111-PA 188 CG12111-PA 50..173 34..155 150 29.4 Plus
CG8343-PA 182 CG8343-PA 59..179 46..164 146 32.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18431-PA 363 GI18431-PA 8..242 1..220 716 63.6 Plus
Dmoj\GI18432-PA 356 GI18432-PA 1..150 1..155 491 55.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17023-PA 559 GL17023-PA 1..304 1..272 656 55.6 Plus
Dper\GL17024-PA 457 GL17024-PA 8..183 4..168 473 51.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14075-PA 577 GA14075-PA 1..263 1..268 732 64.1 Plus
Dpse\GA24335-PB 590 GA24335-PB 37..183 27..168 488 56.5 Plus
Dpse\GA21567-PA 381 GA21567-PA 247..376 32..155 149 32.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21152-PA 322 GM21152-PA 1..322 1..322 1637 96.6 Plus
Dsec\GM21153-PA 329 GM21153-PA 31..162 26..157 432 53 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\lectin-46Ca-PA 329 GD10685-PA 31..162 26..157 433 53 Plus
Dsim\GD10684-PA 182 GD10684-PA 1..158 141..298 329 93.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21514-PA 406 GJ21514-PA 1..285 1..290 750 57.7 Plus
Dvir\GJ21515-PA 390 GJ21515-PA 1..167 1..156 456 49.1 Plus
Dvir\GJ21516-PA 181 GJ21516-PA 10..93 27..107 152 39.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15958-PA 349 GK15958-PA 1..288 1..290 623 54.4 Plus
Dwil\GK15959-PA 358 GK15959-PA 34..166 26..157 456 58.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19302-PA 318 GE19302-PA 1..255 1..256 1133 91 Plus
Dyak\GE19303-PA 326 GE19303-PA 31..162 26..157 438 54.5 Plus