Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT03641.complete Sequence
821 bp assembled on 2011-03-18
GenBank Submission: BT126231.1
> AT03641.complete
ATCAAACTCAATGAAATTACTTAGTATTCAGAGTCTGTGCCTTTGGCATA
CATCGCGTGGCTTTTGATTTTTATTTTATAAGTTATTACTATAGAAAACG
AGATCTGTGGACATTCACGATGCCTGGACAATACACCAACTACAAGTGCA
CTCGATTTATAATGACGGTGCTCCGGTCGTATCTGAGCATACTCTACCTA
TGGGGAATTTTGCAATTGGCTGCCATCATTCCGGTTCCCTGTGAGATCTG
GGAGACAACATTCTTGTTCGCAACAAGGTCCTTTAAAGTTGCCTACGAGT
CGTTTTTTACTAATGATCTGGCGATGTCGGTGTGTATTTGCGTCATGATC
CTCGGTGTGCTGATCTATCTGTACCACTGCTGTCGGTGCAGACTACTTGG
AGCCCGAACTTGGGGCCCAGGAGCGGCTAGGCCGCGCATGAATACACCCA
TTCTGATCTTGACGATACCCTATATCGCAGTCTTCGTCGTTTCCTGGGTA
ATCACCACCAACGCCACGTATCGCGGCATCATCTTTGTGGCTGAGAATGA
AGTGGGTGACCAAAGCGGCAGGGCGATTTTTCTATTGGTCATCGGTCTGC
TAATGAAGCTTCTAGTTTTGGCCAATTTCTATTCGGTTTGCATACGCATC
TGGGCTTACTTAAATATCTTGAATATTGGCTCGAATGATTGGCTAGTGAA
CAACTACAATTTTGGCGATCACCTCAATTTGTTCTTTTGCGTTTGAGAAG
TTGTGTATATTTTTAGCGAAAAATAATAATACTATGTTGCAAGCTAAAAA
AAAAAAAAAAAAAAAAAAAAA
AT03641.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 11072356..11073150 | 1..795 | 3930 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15185158..15185956 | 1..799 | 3995 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 15186357..15187155 | 1..799 | 3995 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 22:33:25 has no hits.
AT03641.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:34:09 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 11072356..11073150 | 1..795 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:26 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43068-RA | 1..627 | 120..746 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:58:01 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43068-RA | 1..627 | 120..746 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:30:17 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43068-RA | 1..627 | 120..746 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:25 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43068-RA | 1..746 | 1..746 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:58:01 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43068-RA | 1..795 | 1..795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:17 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43068-RA | 1..795 | 1..795 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:09 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15185158..15185952 | 1..795 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:09 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15185158..15185952 | 1..795 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:09 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15185158..15185952 | 1..795 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:58:01 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11072663..11073457 | 1..795 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:17 Download gff for
AT03641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15186357..15187151 | 1..795 | 100 | | Plus |
AT03641.hyp Sequence
Translation from 119 to 745
> AT03641.hyp
MPGQYTNYKCTRFIMTVLRSYLSILYLWGILQLAAIIPVPCEIWETTFLF
ATRSFKVAYESFFTNDLAMSVCICVMILGVLIYLYHCCRCRLLGARTWGP
GAARPRMNTPILILTIPYIAVFVVSWVITTNATYRGIIFVAENEVGDQSG
RAIFLLVIGLLMKLLVLANFYSVCIRIWAYLNILNIGSNDWLVNNYNFGD
HLNLFFCV*
AT03641.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43068-PA | 208 | CG43068-PA | 1..208 | 1..208 | 1109 | 100 | Plus |
AT03641.pep Sequence
Translation from 119 to 745
> AT03641.pep
MPGQYTNYKCTRFIMTVLRSYLSILYLWGILQLAAIIPVPCEIWETTFLF
ATRSFKVAYESFFTNDLAMSVCICVMILGVLIYLYHCCRCRLLGARTWGP
GAARPRMNTPILILTIPYIAVFVVSWVITTNATYRGIIFVAENEVGDQSG
RAIFLLVIGLLMKLLVLANFYSVCIRIWAYLNILNIGSNDWLVNNYNFGD
HLNLFFCV*
AT03641.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF12627-PA | 196 | GF12627-PA | 1..196 | 15..208 | 260 | 32.2 | Plus |
Dana\GF19536-PA | 200 | GF19536-PA | 1..198 | 1..206 | 194 | 28.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43068-PA | 208 | CG43068-PA | 1..208 | 1..208 | 1109 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI18718-PA | 206 | GI18718-PA | 1..204 | 1..206 | 231 | 30.6 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ21735-PA | 208 | GJ21735-PA | 1..206 | 1..206 | 236 | 31.5 | Plus |