Clone AT03686 Report

Search the DGRC for AT03686

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:36
Well:86
Vector:pOTB7
Associated Gene/TranscriptWDR79-RC
Protein status:AT03686.pep: gold
Sequenced Size:1724

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9226 2003-01-01 Sim4 clustering to Release 3
CG9226 2004-03-31 Blastp of sequenced clone
CG9226 2008-04-29 Release 5.5 accounting
CG9226 2008-08-15 Release 5.9 accounting
CG9226 2008-12-18 5.12 accounting

Clone Sequence Records

AT03686.complete Sequence

1724 bp (1724 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012509

> AT03686.complete
CACAAAATGTTTTGGAAAAATCCTTAATGATCGAAAATTCGTTTAAAATG
GAAATGCACTTTAAAAACCGTTGGCAAGCGGCCAGCTTATTTTTGCGCTA
TCCTCGCACGGTCACACTGTGCTTGAGCGGTAAAAGTGGCGATATGGACG
AATCGGTCAATTTAAGCACCAGCATGGGCGATGTGGAGGCATCCATGCTG
AATCACAACGTGAGCTTCAGCAGCACCATGGTCACGTCCAATGGCGATCT
TTCGTTGCCCAAACTGAGCGTGACTCTTTCGGCGGAGGAGATCCTAAAGC
TGCGTTCCGGGCGTCCAAAGAACGCCGTTGAATCGCCGCATGCGGGTGTG
CCCATGGAGACAAGCCTGGCTGCCGAGGAGGAAGCGAATGGGGATGAGGA
AGAGGAAAGCGTGCGGGTCGTCGACATAGAGGACACTTTGGAGCTGACGT
CGAATGGCAATGAGGCGAAGCCGGAAGACCAGGAGCTTGCGATTGCTCCC
GTCCTCCAGTACTTCCAGGGAGCACTTGTTGAGTTGGGCCGACGCTGCTG
GACCTCGTCCACGGAGGCTCAGCACTACACCAAAGGCTGCTACTGGTCCC
CGGACGGCACGTGCCTTCTGGTGCCCGTTCACCTAGATGGCATGCACGTT
ATAGAGATGCCCAGTGACCTCTACTCCGCAGATACGGTGCAGCCGGCACG
CTCGCTGACCAAGCTCCAGTCGGAGGTGCACGTGCCCGAGGGCGGAACCG
TCTACGACTGCGTCTGGTATCCGCACATGAACAGCCTGCAACCAGAAACC
TGCTTGTGGCTGGCCACGCGGCAGCACGAACCCATACACATGTGGGATGC
CTTCGACGGTTCCCTGCGATGCAGCTACAGTGGGTACGATGCCGTAGACG
AAGTAATGGCGGCCATTTCCTTGGCCTTCTCCCATGACGGCGAGCAGATC
TATGCGGGATACAAGCGCTGCATCAAGATCTTCGACACCAGCAGACCCGG
ACGTTTTTGCGACGATTACCCTGTCAAGTTTGCCATATCCTGCATTGCAC
AGACCACTGCGCACCCGCACACTCTAACCTGCGGCAACTGGCATGGCTAC
ATCCAGCACTTTGACTTGCGGTGTAGCCACAAGCAGGGTCCTCTCTTCAC
GCTGGGAGGGCACAAGGGCGGCATCACACAACTGCGCTATGGAGAGTTTG
GCAACGGGGAGTGGCATCTGTTCAGTGGAGCTCGCAAGTGCGATAAGATC
TTGCAGTGGGACATGCGCAACTACAAGCAGCCACTGGTGGAGTTGCAGCG
CCATGTGGACACCAATCAGCGTATTCAATTCGACCTCGCATCCGACAGCA
ATTGGCTGGCTAGCGGTGACACACGGGGATTCGTCAATGTTTGGGATCTC
AAAAAATACGGAGATCCTTCCGTACTGCCCCTGCATTCAGACTGCTGCAA
CGGAGTGGCACTCAATCCGGCTATGCCGATTCTAGCCACCAGCTCGGGGC
AGTTCCACTTTACAGACCAAAGTGCCCAAGGGGACAACGTGACCTTAAAC
GGAACGGAAACGACGGAGTTGCCGGCGCCGGCCGATGTGAATCAAAATCA
GAAGGAAGTTCTCTACGAGAACGCAGTGGTCATGTGGTGGTGCGGCCAAA
CGGGATAGCATATAAAACTGGTGTAGTCGAGTAAATAATACAAAATCCGT
CAAAAAAAAAAAAAAAAAAAAAAA

AT03686.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
WDR79-RA 1723 WDR79-RA 7..1707 1..1701 8475 99.8 Plus
Arc-p20-RA 846 Arc-p20-RA 804..846 1701..1659 215 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6124940..6125648 1701..993 3545 100 Minus
chr2L 23010047 chr2L 6125950..6126604 808..154 3245 99.7 Minus
chr2L 23010047 chr2L 6125706..6125894 994..806 945 100 Minus
chr2L 23010047 chr2L 6126661..6126813 153..1 765 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6125889..6126597 1701..993 3545 100 Minus
2L 23513712 2L 6126899..6127553 808..154 3245 99.7 Minus
2L 23513712 2L 6126655..6126843 994..806 945 100 Minus
2L 23513712 2L 6127610..6127762 153..1 765 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6125889..6126597 1701..993 3545 100 Minus
2L 23513712 2L 6126899..6127553 808..154 3245 99.6 Minus
2L 23513712 2L 6126655..6126843 994..806 945 100 Minus
2L 23513712 2L 6127610..6127762 153..1 765 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:44:07 has no hits.

AT03686.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:45:03 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6124940..6125646 995..1701 100 <- Minus
chr2L 6125706..6125894 806..994 100 <- Minus
chr2L 6125953..6126604 154..805 99 <- Minus
chr2L 6126661..6126813 1..153 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:51:17 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
CG9226-RA 1..1632 27..1658 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:39:04 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
WDR79-RA 1..1632 27..1658 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:12:34 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
WDR79-RB 1..1515 144..1658 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:50 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
CG9226-RA 1..1632 27..1658 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:53 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
WDR79-RC 1..1632 27..1658 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:47:16 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
CG9226-RA 1..1701 1..1701 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:39:04 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
WDR79-RA 1..1701 1..1701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:34 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
WDR79-RB 1..1592 110..1701 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:50 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
CG9226-RA 1..1701 1..1701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:53 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
WDR79-RC 14..1714 1..1701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:45:03 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6126655..6126843 806..994 100 <- Minus
2L 6125889..6126595 995..1701 100 <- Minus
2L 6126902..6127553 154..805 99 <- Minus
2L 6127610..6127762 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:45:03 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6126655..6126843 806..994 100 <- Minus
2L 6125889..6126595 995..1701 100 <- Minus
2L 6126902..6127553 154..805 99 <- Minus
2L 6127610..6127762 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:45:03 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6126655..6126843 806..994 100 <- Minus
2L 6125889..6126595 995..1701 100 <- Minus
2L 6126902..6127553 154..805 99 <- Minus
2L 6127610..6127762 1..153 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:34 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6125889..6126595 995..1701 100 <- Minus
arm_2L 6126655..6126843 806..994 100 <- Minus
arm_2L 6126902..6127553 154..805 99 <- Minus
arm_2L 6127610..6127762 1..153 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:00:14 Download gff for AT03686.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6125889..6126595 995..1701 100 <- Minus
2L 6126655..6126843 806..994 100 <- Minus
2L 6126902..6127553 154..805 99 <- Minus
2L 6127610..6127762 1..153 100   Minus

AT03686.hyp Sequence

Translation from 2 to 1657

> AT03686.hyp
QNVLEKSLMIENSFKMEMHFKNRWQAASLFLRYPRTVTLCLSGKSGDMDE
SVNLSTSMGDVEASMLNHNVSFSSTMVTSNGDLSLPKLSVTLSAEEILKL
RSGRPKNAVESPHAGVPMETSLAAEEEANGDEEEESVRVVDIEDTLELTS
NGNEAKPEDQELAIAPVLQYFQGALVELGRRCWTSSTEAQHYTKGCYWSP
DGTCLLVPVHLDGMHVIEMPSDLYSADTVQPARSLTKLQSEVHVPEGGTV
YDCVWYPHMNSLQPETCLWLATRQHEPIHMWDAFDGSLRCSYSGYDAVDE
VMAAISLAFSHDGEQIYAGYKRCIKIFDTSRPGRFCDDYPVKFAISCIAQ
TTAHPHTLTCGNWHGYIQHFDLRCSHKQGPLFTLGGHKGGITQLRYGEFG
NGEWHLFSGARKCDKILQWDMRNYKQPLVELQRHVDTNQRIQFDLASDSN
WLASGDTRGFVNVWDLKKYGDPSVLPLHSDCCNGVALNPAMPILATSSGQ
FHFTDQSAQGDNVTLNGTETTELPAPADVNQNQKEVLYENAVVMWWCGQT
G*

AT03686.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
WDR79-PC 543 CG9226-PC 1..543 9..551 2940 100 Plus
WDR79-PB 504 CG9226-PB 1..504 48..551 2732 100 Plus

AT03686.pep Sequence

Translation from 26 to 1657

> AT03686.pep
MIENSFKMEMHFKNRWQAASLFLRYPRTVTLCLSGKSGDMDESVNLSTSM
GDVEASMLNHNVSFSSTMVTSNGDLSLPKLSVTLSAEEILKLRSGRPKNA
VESPHAGVPMETSLAAEEEANGDEEEESVRVVDIEDTLELTSNGNEAKPE
DQELAIAPVLQYFQGALVELGRRCWTSSTEAQHYTKGCYWSPDGTCLLVP
VHLDGMHVIEMPSDLYSADTVQPARSLTKLQSEVHVPEGGTVYDCVWYPH
MNSLQPETCLWLATRQHEPIHMWDAFDGSLRCSYSGYDAVDEVMAAISLA
FSHDGEQIYAGYKRCIKIFDTSRPGRFCDDYPVKFAISCIAQTTAHPHTL
TCGNWHGYIQHFDLRCSHKQGPLFTLGGHKGGITQLRYGEFGNGEWHLFS
GARKCDKILQWDMRNYKQPLVELQRHVDTNQRIQFDLASDSNWLASGDTR
GFVNVWDLKKYGDPSVLPLHSDCCNGVALNPAMPILATSSGQFHFTDQSA
QGDNVTLNGTETTELPAPADVNQNQKEVLYENAVVMWWCGQTG*

AT03686.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15402-PA 496 GF15402-PA 5..495 49..542 1760 66.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23638-PA 430 GG23638-PA 148..430 261..543 1406 87.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10930-PA 520 GH10930-PA 1..512 40..540 1567 60.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
WDR79-PC 543 CG9226-PC 1..543 1..543 2940 100 Plus
WDR79-PB 504 CG9226-PB 1..504 40..543 2732 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13423-PA 557 GI13423-PA 5..552 55..540 1508 54.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19075-PA 426 GL19075-PA 148..424 261..541 1146 74 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21626-PA 592 GA21626-PA 25..590 45..541 1679 58.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17958-PA 505 GM17958-PA 1..505 40..543 2500 92.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22597-PA 466 GD22597-PA 1..427 40..468 2031 87.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12063-PA 523 GJ12063-PA 1..520 50..542 1583 58.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15386-PA 537 GK15386-PA 8..533 55..540 1512 55.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18459-PA 511 GE18459-PA 1..511 39..543 2224 79.9 Plus