Clone AT03755 Report

Search the DGRC for AT03755

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:37
Well:55
Vector:pOTB7
Associated Gene/TranscriptCG13004-RA
Protein status:AT03755.pep: gold
Preliminary Size:606
Sequenced Size:959

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13004 2002-01-01 Sim4 clustering to Release 2
CG13004 2002-02-22 Blastp of sequenced clone
CG13004 2003-01-01 Sim4 clustering to Release 3
CG13004 2008-04-29 Release 5.5 accounting
CG13004 2008-08-15 Release 5.9 accounting
CG13004 2008-12-18 5.12 accounting

Clone Sequence Records

AT03755.complete Sequence

959 bp (959 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084096

> AT03755.complete
AACAAATTTTCCTCCGTATAATCCTGGATTTGTGTCTAATTTCCCAGAAT
GGTACTACAAAACCACAACACTGTGGTGGCCCGTTCCACCTTGACGCCGA
ACAGCAGCAGCCAGAACTTTGGCTCCCAACATCCAGCTGGAACGCCCAAT
GGATCCGGAACCGGACGTAGTCCCCTGAACGCCGGACCCAGCACCCAACG
TCCCATTATCGACCTGTTGGTGGCCATGGTGGCCGTGCCGGTGCTTATCC
TCTGCGCCCTGCAGCTGGAGAAGAATCTGCGGGACAATAGCGTGGAGTCT
CGCTGGTTGGTTTTCGCCCTGGGCATCGGGATGCTGGTGATCAGCGTGAT
CATCTGCGGTTATGTCACGCACCGCATGGGCGTCTGCATTTGGGCGGGAC
CCATCGACGAGGCGGGAAACAGGGCCACCAATGGAGCCATGCCACATATC
AACTCCCAGAACGATGTGCTGCGCATTGTCGACTCACTGCCGCCAAGTTA
CGAAAGCGTGGTCAAGTTCGAGCTACCGCCGCCGACCTACGAATGCCTGG
TCATCAGCTGGGGTCGGTCGAAGGATCTGGAGCCGGCACAGACCTCAGCC
AAGCGAGGAGCTGGTGGATCCAACTCCCCGCCCGGGTCCACCCTGCACAT
CTAGGGTGGAAGTGGTGGCGAGGGAGGGAGTTGAATGGAACTAATGGAGC
AGTAGATGGAGGAGAGAGAATTAAGAGATTTTTTCCCAACTGGCAGCGCA
ACGGATTTCTGTACTTGACCCACTTAAAATAACCATATGCAAAAAAAACT
GTAACAACGACATCGATAAGTGGTGTTCTGGAAACTCTGGTGTTTTCGAA
AGTTCCCAGAGCATTTAGCTGAATACCGCCATATATCCGTATGTCTTATT
ATAAATTGTAAGCTAACTATTAGCTTGTCATAGCATAAAAAAAAAAAAAA
AAAAAAAAA

AT03755.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-RA 1134 CG13004-RA 27..958 7..938 4645 99.8 Plus
CG13004-RB 1991 CG13004-RB 925..1815 48..938 4440 99.8 Plus
CG13004.a 2341 CG13004.a 925..1815 48..938 4440 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16716775..16717263 936..448 2445 100 Minus
chrX 22417052 chrX 16717334..16717774 447..7 2205 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16827115..16827605 938..448 2455 100 Minus
X 23542271 X 16827676..16828116 447..7 2190 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16835213..16835703 938..448 2455 100 Minus
X 23527363 X 16835774..16836214 447..7 2190 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 15:49:41 has no hits.

AT03755.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:50:32 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16716775..16717263 448..936 100 <- Minus
chrX 16717334..16717774 7..447 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:51:21 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 1..606 49..654 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:43:26 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 1..606 49..654 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:55:18 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RD 42..654 42..654 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:11:52 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 1..606 49..654 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:54:58 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RD 42..654 42..654 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:02 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RA 27..956 7..936 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:26 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RC 1..936 1..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:55:18 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RC 1..936 1..936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:11:52 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RA 27..956 7..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:54:58 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RC 1..936 1..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:32 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
X 16827117..16827605 448..936 100 <- Minus
X 16827676..16828116 7..447 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:32 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
X 16827117..16827605 448..936 100 <- Minus
X 16827676..16828116 7..447 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:50:32 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
X 16827117..16827605 448..936 100 <- Minus
X 16827676..16828116 7..447 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:55:18 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16721150..16721638 448..936 100 <- Minus
arm_X 16721709..16722149 7..447 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:22 Download gff for AT03755.complete
Subject Subject Range Query Range Percent Splice Strand
X 16835215..16835703 448..936 100 <- Minus
X 16835774..16836214 7..447 99   Minus

AT03755.hyp Sequence

Translation from 48 to 653

> AT03755.hyp
MVLQNHNTVVARSTLTPNSSSQNFGSQHPAGTPNGSGTGRSPLNAGPSTQ
RPIIDLLVAMVAVPVLILCALQLEKNLRDNSVESRWLVFALGIGMLVISV
IICGYVTHRMGVCIWAGPIDEAGNRATNGAMPHINSQNDVLRIVDSLPPS
YESVVKFELPPPTYECLVISWGRSKDLEPAQTSAKRGAGGSNSPPGSTLH
I*

AT03755.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-PB 201 CG13004-PB 1..201 1..201 1049 100 Plus
CG13004-PC 201 CG13004-PC 1..201 1..201 1049 100 Plus
CG13004-PA 201 CG13004-PA 1..201 1..201 1049 100 Plus
CG13004-PD 217 CG13004-PD 17..217 1..201 1049 100 Plus

AT03755.pep Sequence

Translation from 48 to 653

> AT03755.pep
MVLQNHNTVVARSTLTPNSSSQNFGSQHPAGTPNGSGTGRSPLNAGPSTQ
RPIIDLLVAMVAVPVLILCALQLEKNLRDNSVESRWLVFALGIGMLVISV
IICGYVTHRMGVCIWAGPIDEAGNRATNGAMPHINSQNDVLRIVDSLPPS
YESVVKFELPPPTYECLVISWGRSKDLEPAQTSAKRGAGGSNSPPGSTLH
I*

AT03755.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21825-PA 213 GF21825-PA 17..213 1..201 828 82.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18220-PA 220 GG18220-PA 17..220 1..201 877 86.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24220-PA 208 GH24220-PA 1..208 1..201 712 70.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-PB 201 CG13004-PB 1..201 1..201 1049 100 Plus
CG13004-PC 201 CG13004-PC 1..201 1..201 1049 100 Plus
CG13004-PA 201 CG13004-PA 1..201 1..201 1049 100 Plus
CG13004-PD 217 CG13004-PD 17..217 1..201 1049 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15847-PA 231 GI15847-PA 1..193 1..185 696 75.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22822-PA 211 GL22822-PA 17..211 1..201 801 81.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11970-PA 211 GA11970-PA 17..211 1..201 806 81.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13362-PA 204 GM13362-PA 1..204 1..201 846 89.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15719-PA 204 GD15719-PA 1..204 1..201 829 89.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19337-PA 224 GJ19337-PA 17..224 1..201 763 75.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25824-PA 226 GK25824-PA 19..226 1..201 741 73.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15639-PA 217 GE15639-PA 17..217 1..201 887 87.6 Plus