Clone AT04143 Report

Search the DGRC for AT04143

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:41
Well:43
Vector:pOTB7
Associated Gene/TranscriptCG12289-RB
Protein status:AT04143.pep: validated not full length
Preliminary Size:1221
Sequenced Size:1201

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12289 2002-01-01 Sim4 clustering to Release 2
CG12289 2002-02-26 Blastp of sequenced clone
CG12289 2003-01-01 Sim4 clustering to Release 3
CG12289 2008-04-29 Release 5.5 accounting
CG12289 2008-08-15 Release 5.9 accounting
CG12289 2008-12-18 5.12 accounting

Clone Sequence Records

AT04143.complete Sequence

1201 bp (1201 high quality bases) assembled on 2002-02-26

GenBank Submission: AY094633

> AT04143.complete
ATTTGTCAAGAGTTATTCAAAATCAAAAAAACAAATTATGATCGATTTAA
ATTAAGGGCAGAGAATCGAAGAAAGAAGTAGAGGAGGATCTGGAATGCTT
CAGCGCAGCGGAAGATCCTCGAATGTTAGTACGGCCCTGCGTCTGTTGGG
CGCCAATGTGGAGTTGTTCGGTGTGCTCACCCGTAATCCCACCTATCGCA
TGATTCTGGATGATCTCGAGCAGCGGGGCATTGATATTAGCCATTGTACA
TTCACGGACGCAAGTCCTCCCTTTTCCACAATTGTCCAAGATCGCTGGAC
GCGTCGTTGCACGGTGGTGTATTGCGACAAGTCATTTCCATATGTTACGG
CAGCGGATTTTCGCAAACTGGATCTCGATCAATACGGCTGGGTGAATTTT
GAGGCACGGAGTCCACGTGAAACTTGCGATATGATACGCCTAATCCTCGA
TCACAACAACGGGCGGGATGAACGGGATCGGATAGTGGTATCGTTGCAGA
TTTTCAATTCCTTCGAACAGGTCGTGCATCTGATTGCCATGTGCGACTAT
GTGTTCGTCACCAAGTATATAGCCGAGTCCAGAGGCTGGAAGTCACCGCT
GGAAGCCTGCGAGGGTGTCAATGCGCTACTGCGCATGCCAAGGAACATTA
GAATTCGCAGACCCTGCATCATTGTGCCGTGGAGCAGCCTGGGAGCAGGA
TGTATGACCACGGAAGGGGAGTACTTCGAAGTGCCAGCACACAAGCCGAA
AAAGATCATCGATCGGGTGGGCGATAGTGATTGCTTCACGGCGGGCTTCA
TTTATGCCGCTTTTGTGCGGCAAAGGCGATTGGCCGAAGCCGTGGACTTC
GCCAATGCTGTGGCCAGCTATAAGTTGGGCTATGTGGGTTTCGATTGCCT
GGGTCATTTGCCAATCGATGCGGTTAAGCTGCCCGTTAGAATGAGGTGTG
GCAGTGAGGTGTCCTCCGACGATGAGGATAACGGCGATCAGTTGAATAGC
TGCAAGAAGCACCTGTTACGCCCGATTGAGTTCCTGCCGGAAAAGTCCTC
CATTGCACCCACTGAGAAGGAAGTTCCGATCGAGACTTCGCAACTTTCTA
GCTAGAAAAGCACTGACCATCTGAAATATTCTGCAAATTTAAAACATTTA
ATGTATGGTTTATAAATCTAAGTGTATCACCTAAAAAAAAAAAAAAAAAA
A

AT04143.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-RA 1395 CG12289-RA 301..1394 91..1184 5440 99.8 Plus
CG12289-RA 1395 CG12289-RA 54..147 1..94 470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11447856..11448947 1182..91 5460 100 Minus
chr3L 24539361 chr3L 11449101..11449194 94..1 470 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11457073..11458170 1188..91 5445 99.7 Minus
3L 28110227 3L 11458324..11458417 94..1 470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11450173..11451270 1188..91 5445 99.7 Minus
3L 28103327 3L 11451424..11451517 94..1 470 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:48:14 has no hits.

AT04143.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:48:53 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11447856..11448947 90..1182 99 -> Minus
chr3L 11449106..11449194 1..89 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:25 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 120..1137 87..1105 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:46:52 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 120..1137 87..1105 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:32 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 120..1137 87..1105 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:42:51 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 120..1137 87..1105 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:00:10 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RB 54..1222 1..1180 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:25 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 54..142 1..89 100 -- Plus
CG12289-RA 299..1392 90..1182 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:46:52 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 54..142 1..89 100 -- Plus
CG12289-RA 299..1392 90..1182 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:32 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RB 54..1222 1..1180 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:42:51 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
CG12289-RA 54..142 1..89 100 -- Plus
CG12289-RA 299..1392 90..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:48:53 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11457079..11458170 90..1182 99 -> Minus
3L 11458329..11458417 1..89 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:48:53 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11457079..11458170 90..1182 99 -> Minus
3L 11458329..11458417 1..89 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:48:53 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11457079..11458170 90..1182 99 -> Minus
3L 11458329..11458417 1..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:46:52 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11451429..11451517 1..89 100   Minus
arm_3L 11450179..11451270 90..1182 99 -> Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:23 Download gff for AT04143.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11450179..11451270 90..1182 99 -> Minus
3L 11451429..11451517 1..89 100   Minus

AT04143.pep Sequence

Translation from 94 to 1104

> AT04143.pep
MLQRSGRSSNVSTALRLLGANVELFGVLTRNPTYRMILDDLEQRGIDISH
CTFTDASPPFSTIVQDRWTRRCTVVYCDKSFPYVTAADFRKLDLDQYGWV
NFEARSPRETCDMIRLILDHNNGRDERDRIVVSLQIFNSFEQVVHLIAMC
DYVFVTKYIAESRGWKSPLEACEGVNALLRMPRNIRIRRPCIIVPWSSLG
AGCMTTEGEYFEVPAHKPKKIIDRVGDSDCFTAGFIYAAFVRQRRLAEAV
DFANAVASYKLGYVGFDCLGHLPIDAVKLPVRMRCGSEVSSDDEDNGDQL
NSCKKHLLRPIEFLPEKSSIAPTEKEVPIETSQLSS*

AT04143.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24552-PA 375 GF24552-PA 44..366 2..323 1061 59.3 Plus
Dana\GF24486-PA 305 GF24486-PA 39..297 3..267 597 44.2 Plus
Dana\GF25264-PA 327 GF25264-PA 52..326 3..277 542 37.7 Plus
Dana\GF24487-PA 373 GF24487-PA 68..369 3..278 273 26.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13921-PA 381 GG13921-PA 44..373 2..331 1630 90.3 Plus
Dere\GG13341-PA 306 GG13341-PA 39..304 3..274 576 42.3 Plus
Dere\GG15503-PA 322 GG15503-PA 50..316 4..272 527 37.5 Plus
Dere\GG13342-PA 375 GG13342-PA 68..370 3..277 295 26 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15118-PA 307 GH15118-PA 36..301 3..275 609 42 Plus
Dgri\GH16650-PA 379 GH16650-PA 45..355 3..312 600 39.2 Plus
Dgri\GH14844-PA 322 GH14844-PA 50..311 4..267 535 39.4 Plus
Dgri\GH15119-PA 374 GH15119-PA 67..369 5..277 302 27.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-PA 378 CG12289-PA 43..378 1..336 1771 100 Plus
CG7328-PA 306 CG7328-PA 39..304 3..274 577 42.7 Plus
CG7551-PB 322 CG7551-PB 50..316 4..272 526 37.5 Plus
CG7335-PA 372 CG7335-PA 65..367 3..277 292 26.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13697-PA 379 GI13697-PA 46..347 4..310 621 41 Plus
Dmoj\GI11611-PA 424 GI11611-PA 44..387 4..336 621 37.5 Plus
Dmoj\GI13769-PA 310 GI13769-PA 39..304 3..275 618 44.5 Plus
Dmoj\GI13699-PA 322 GI13699-PA 49..316 3..272 507 37.8 Plus
Dmoj\GI13771-PA 371 GI13771-PA 67..366 5..277 331 27.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25057-PA 310 GL25057-PA 42..307 3..272 652 46.3 Plus
Dper\GL22794-PA 302 GL22794-PA 27..291 3..267 507 38 Plus
Dper\GL22827-PA 192 GL22827-PA 44..191 2..149 479 61.5 Plus
Dper\GL22825-PA 219 GL22825-PA 44..137 2..95 317 64.9 Plus
Dper\GL25058-PA 371 GL25058-PA 65..366 3..277 301 27.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23880-PA 394 GA23880-PA 43..363 1..320 897 56.1 Plus
Dpse\GA20264-PA 310 GA20264-PA 42..307 3..272 648 46 Plus
Dpse\GA20433-PA 327 GA20433-PA 52..326 3..277 508 37 Plus
Dpse\GA20271-PA 371 GA20271-PA 65..366 3..277 303 27.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24754-PA 378 GM24754-PA 43..378 1..336 1760 97.6 Plus
Dsec\GM22247-PA 306 GM22247-PA 39..304 3..274 578 42 Plus
Dsec\GM25272-PA 322 GM25272-PA 50..316 4..272 543 37.5 Plus
Dsec\GM22248-PA 372 GM22248-PA 65..367 3..277 298 26.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12805-PA 378 GD12805-PA 43..378 1..336 1756 97.3 Plus
Dsim\GD12218-PA 306 GD12218-PA 39..304 3..274 583 42.3 Plus
Dsim\GD14306-PA 322 GD14306-PA 50..316 4..272 543 37.5 Plus
Dsim\GD12219-PA 183 GD12219-PA 65..170 3..107 163 33 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11289-PA 420 GJ11289-PA 45..350 3..312 651 43.7 Plus
Dvir\GJ13759-PA 310 GJ13759-PA 39..301 3..272 631 44.6 Plus
Dvir\GJ14039-PA 322 GJ14039-PA 49..311 3..267 552 38.1 Plus
Dvir\GJ13760-PA 370 GJ13760-PA 67..365 5..277 332 27.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17169-PA 418 GK17169-PA 45..384 3..335 723 41.6 Plus
Dwil\GK17250-PA 308 GK17250-PA 39..305 3..272 625 44.1 Plus
Dwil\GK19276-PA 327 GK19276-PA 49..326 3..277 547 36 Plus
Dwil\GK17251-PA 698 GK17251-PA 65..367 3..269 263 26.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20217-PA 380 GE20217-PA 44..373 2..332 1645 91.2 Plus
Dyak\GE22430-PA 306 GE22430-PA 39..302 3..272 581 43 Plus
Dyak\GE21811-PA 322 GE21811-PA 50..316 4..272 534 37.9 Plus
Dyak\GE22431-PA 375 GE22431-PA 68..370 3..277 308 27 Plus
Dyak\GE23230-PA 330 GE23230-PA 23..325 3..277 306 27 Plus

AT04143.hyp Sequence

Translation from 94 to 1104

> AT04143.hyp
MLQRSGRSSNVSTALRLLGANVELFGVLTRNPTYRMILDDLEQRGIDISH
CTFTDASPPFSTIVQDRWTRRCTVVYCDKSFPYVTAADFRKLDLDQYGWV
NFEARSPRETCDMIRLILDHNNGRDERDRIVVSLQIFNSFEQVVHLIAMC
DYVFVTKYIAESRGWKSPLEACEGVNALLRMPRNIRIRRPCIIVPWSSLG
AGCMTTEGEYFEVPAHKPKKIIDRVGDSDCFTAGFIYAAFVRQRRLAEAV
DFANAVASYKLGYVGFDCLGHLPIDAVKLPVRMRCGSEVSSDDEDNGDQL
NSCKKHLLRPIEFLPEKSSIAPTEKEVPIETSQLSS*

AT04143.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12289-PA 378 CG12289-PA 43..378 1..336 1771 100 Plus
CG7328-PA 306 CG7328-PA 39..304 3..274 577 42.7 Plus
CG7551-PB 322 CG7551-PB 50..316 4..272 526 37.5 Plus
CG7335-PA 372 CG7335-PA 65..367 3..277 292 26.6 Plus