BDGP Sequence Production Resources |
Search the DGRC for AT04225
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 42 |
Well: | 25 |
Vector: | pOTB7 |
Associated Gene/Transcript | S-RA |
Protein status: | AT04225.pep: gold |
Preliminary Size: | 3024 |
Sequenced Size: | 2262 |
Gene | Date | Evidence |
---|---|---|
CG4385 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4385 | 2002-04-21 | Blastp of sequenced clone |
CG4385 | 2003-01-01 | Sim4 clustering to Release 3 |
S | 2008-04-29 | Release 5.5 accounting |
S | 2008-08-15 | Release 5.9 accounting |
S | 2008-12-18 | 5.12 accounting |
2262 bp (2262 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113201
> AT04225.complete CCGACGCTTGTCTGCTCTCCACCCGCGCATCAAACGTCGAAAAATCGTAA CGTCGCGAGTGCTACGCGGTGGCCAGGAGGAAAATTCGCCAGCAATAGCA ACACTTGGACCGAAAATCTAAAGGAAACTGGGAAATGATGCGGCTGTAGA AGAGGACTTTCAACCAGGAGGTACACGAGATTGAAGGAACCCACATAGGA GTCATGTCGCAGCAAGTGTTCTCGGCGCATCCAGCGCTGGCGGTGGACCA GCTGCAGCAGGCGGAACAAGAGGAGCACAATACCAGTAGTAATCATCACC AGCAGAGATCGGCGACACAGAGCCGCCGGCATACCAAGGCCGCACCCAAG AAGTTCACCCTGAGCAGGAGTTGCGCCGGCGGAGGATCGGGAACCCTGAG CGGAGTCCACCAGCAAGTCAAGCCCAGTCCTTCAAACCCCGCCATCAGTC CGGAGTGCAGGAAAACACTGCCCGTGCGAACAAACTATGCGGCGGTGGAT GACGACGATGACATCGAGTGCGAGGATGTGGACGAGGTGAACTTTGGCCA GCAGGAGAAGGAGCGGGAGCGGGAGACCCGGCAACCAACCAAAGACTGTG GCACCGATGAGACGGATCATGTGCAGCAGCGCCACAAAAACACAATGACG ACCTCGGCGACGGCGGCGAGCAGGCACCACCACCAGGACGGAGGAGGAGG TGACCAGAGCGATCTGAGCAGCGTGATCAGCTCGCCGTCGGTCAGCACAG TGTCCTCGCCCCTCTCCACGCCCACCAGGCTGCCACAGGCGCTGCAACAG CAGCTACACTGCTGCCAGAAGTCCACGGGCATGGAGTCCCGGGCGAGAAC ATCTCCGCAACAGATCCAGCATCCGCACAGACAGCACCACCAGCAGCAGC ACCATCACCACCACCACCATCACCACCTCACGGCAGCGGGTTGTACGGGC GGAGGAGGAGGAGGCGGTGGCTCTGGAGGATCGGGATCCTGCAAGGCGAA GAAGCTCGATCCCCGACTGAATCCCTCGCCCTATCGCCAGCTATTGCCCA TCGCCCTGTGCCTGCTCTCCTTCGCGGCAGTCTTCGCCACATTAATAGTT TACATGGACACGACAGAGATTCGCCATCAGCAGTTTCGGCTAAACATGTC GCGCGACTACGAGCTGAATGGGGTTGCGCAAGACGATCCCGCACTCATTG ATTTCCTGCGCCAGATCCACATGGGCAAGTACCTGGGCAAGGCGTCGCCC AAGGTCGCGGCAGCGGCCTCAGTGGGCGTGGGTCCGCCGCCCAACTCGCC GCGCCTCGCCGCCGCAGGCTCAACATTCGGTAGTGGCAACAGCAGCGGCA GTGGAGCCGATCAACTGGCCCACTACGTGGCCGACCTAGTGGGCGGCAAG ATGAACGGCGCGGTGATCCAGTCGCTGAGCGGTCCTCTCGCCCATCTGAT CACGGCGCCCTGGCTGAGCGAGCAGCTCAACTGGATGGGCGTGCTGGTGG AGCCGGAGCCGCGCTGGTACTTCACGTTGCGCAAGCAGAATGCCCAGCGG GCGCGCATGCAGGTGGTGCACGCCTGTGTTTCGCCCAATACCTATCCCAA AGAGATTACCATACACAACGAGGATGTGCGCATCAATAGTCTGCACGACG AGGAGACCTCGTGGTTCAACTCGCGTGTCAAATGCTTTCCGCTCTACACA ATCATGCTGGCATGTGAGCGCACCGAATACGATCTGCTCAGCCTGGGCGT ACAGGGGCATGAGCTGGAGATCTTGCAGACGCTGCCCTTCGACAAAGTCA AAATCGATGTGATATCGATACATTTGCTCGAGGATCACGAGGACGTGGCC GATTACGTGCTGGACATCACCAGGTTCCTGGCGGGCAAGTCCTATAAGCT GCAGCGCAAGATCGGTCGGAACTACTTCTACCAGCGGCTCAATGCCAGCG CCAGTCGCACGCGCAAAAAAGATATCCTGCTGCTGAAGACGCCCTAGGCT CGACCACCGCAACGAACCATCAAAGGATCAAACTGGGCGTCAGCTGCCCA GACGACATCGAAGTGAAGACAAGCGTTGAACAGCGAAAAATTAAAGTAGT TACTGAAAGAAATCAAGAAAACACTTGGTAGCGAAGCGAGAGAAGAGCAT AACTCTCAAACTGAACTCTATGTTATAATGATAATTATTACTATACATAC GCTACACTAACGATATGGTTTAATATACTGTATACCGATTATGAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S.a | 5221 | S.a | 1035..3146 | 133..2244 | 10530 | 99.9 | Plus |
S.b | 5223 | S.b | 1035..3146 | 133..2244 | 10530 | 99.9 | Plus |
S-RB | 4060 | S-RB | 1035..3146 | 133..2244 | 10530 | 99.9 | Plus |
S.a | 5221 | S.a | 86..222 | 1..137 | 655 | 98.5 | Plus |
S.b | 5223 | S.b | 86..222 | 1..137 | 655 | 98.5 | Plus |
S-RB | 4060 | S-RB | 86..222 | 1..137 | 655 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 1061110..1062089 | 1116..137 | 4795 | 99.3 | Minus |
chr2L | 23010047 | chr2L | 1052442..1052932 | 1604..1114 | 2395 | 99.2 | Minus |
chr2L | 23010047 | chr2L | 1051668..1052143 | 2243..1768 | 2365 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 1052207..1052373 | 1769..1603 | 835 | 100 | Minus |
chr2L | 23010047 | chr2L | 1077537..1077673 | 137..1 | 685 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1061234..1062213 | 1116..137 | 4900 | 100 | Minus |
2L | 23513712 | 2L | 1052566..1053056 | 1604..1114 | 2440 | 99.8 | Minus |
2L | 23513712 | 2L | 1051791..1052267 | 2244..1768 | 2385 | 100 | Minus |
2L | 23513712 | 2L | 1052331..1052497 | 1769..1603 | 835 | 100 | Minus |
2L | 23513712 | 2L | 1077651..1077787 | 137..1 | 655 | 98.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1061234..1062213 | 1116..137 | 4900 | 100 | Minus |
2L | 23513712 | 2L | 1052566..1053056 | 1604..1114 | 2440 | 99.7 | Minus |
2L | 23513712 | 2L | 1051791..1052267 | 2244..1768 | 2385 | 100 | Minus |
2L | 23513712 | 2L | 1052331..1052497 | 1769..1603 | 835 | 100 | Minus |
2L | 23513712 | 2L | 1077651..1077787 | 137..1 | 655 | 98.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..2937 | 779..937 | 139 | 57.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 1051668..1052141 | 1770..2243 | 99 | <- | Minus |
chr2L | 1052207..1052371 | 1605..1769 | 100 | <- | Minus |
chr2L | 1052442..1052929 | 1117..1604 | 99 | <- | Minus |
chr2L | 1061110..1062089 | 137..1116 | 94 | <- | Minus |
chr2L | 1077538..1077673 | 1..136 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
S-RA | 1..1794 | 204..1997 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
S-RA | 1..1794 | 204..1997 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
S-RB | 1..1794 | 204..1997 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
S-RA | 1..1794 | 204..1997 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
S-RB | 1..1794 | 204..1997 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
S-RA | 25..2267 | 1..2243 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
S-RA | 25..2267 | 1..2243 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
S-RA | 25..2267 | 1..2243 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
S-RA | 25..2267 | 1..2243 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
S-RA | 25..2267 | 1..2243 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1051792..1052265 | 1770..2243 | 100 | <- | Minus |
2L | 1052331..1052495 | 1605..1769 | 100 | <- | Minus |
2L | 1052566..1053053 | 1117..1604 | 99 | <- | Minus |
2L | 1061234..1062213 | 137..1116 | 100 | <- | Minus |
2L | 1077652..1077787 | 1..136 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1051792..1052265 | 1770..2243 | 100 | <- | Minus |
2L | 1052331..1052495 | 1605..1769 | 100 | <- | Minus |
2L | 1052566..1053053 | 1117..1604 | 99 | <- | Minus |
2L | 1061234..1062213 | 137..1116 | 100 | <- | Minus |
2L | 1077652..1077787 | 1..136 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1051792..1052265 | 1770..2243 | 100 | <- | Minus |
2L | 1052331..1052495 | 1605..1769 | 100 | <- | Minus |
2L | 1052566..1053053 | 1117..1604 | 99 | <- | Minus |
2L | 1061234..1062213 | 137..1116 | 100 | <- | Minus |
2L | 1077652..1077787 | 1..136 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 1052331..1052495 | 1605..1769 | 100 | <- | Minus |
arm_2L | 1051792..1052265 | 1770..2243 | 100 | <- | Minus |
arm_2L | 1052566..1053053 | 1117..1604 | 99 | <- | Minus |
arm_2L | 1061234..1062213 | 137..1116 | 100 | <- | Minus |
arm_2L | 1077652..1077787 | 1..136 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1051792..1052265 | 1770..2243 | 100 | <- | Minus |
2L | 1052331..1052495 | 1605..1769 | 100 | <- | Minus |
2L | 1052566..1053053 | 1117..1604 | 99 | <- | Minus |
2L | 1061234..1062213 | 137..1116 | 100 | <- | Minus |
2L | 1077652..1077787 | 1..136 | 98 | Minus |
Translation from 203 to 1996
> AT04225.pep MSQQVFSAHPALAVDQLQQAEQEEHNTSSNHHQQRSATQSRRHTKAAPKK FTLSRSCAGGGSGTLSGVHQQVKPSPSNPAISPECRKTLPVRTNYAAVDD DDDIECEDVDEVNFGQQEKERERETRQPTKDCGTDETDHVQQRHKNTMTT SATAASRHHHQDGGGGDQSDLSSVISSPSVSTVSSPLSTPTRLPQALQQQ LHCCQKSTGMESRARTSPQQIQHPHRQHHQQQHHHHHHHHHLTAAGCTGG GGGGGGSGGSGSCKAKKLDPRLNPSPYRQLLPIALCLLSFAAVFATLIVY MDTTEIRHQQFRLNMSRDYELNGVAQDDPALIDFLRQIHMGKYLGKASPK VAAAASVGVGPPPNSPRLAAAGSTFGSGNSSGSGADQLAHYVADLVGGKM NGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVEPEPRWYFTLRKQNAQRA RMQVVHACVSPNTYPKEITIHNEDVRINSLHDEETSWFNSRVKCFPLYTI MLACERTEYDLLSLGVQGHELEILQTLPFDKVKIDVISIHLLEDHEDVAD YVLDITRFLAGKSYKLQRKIGRNYFYQRLNASASRTRKKDILLLKTP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21096-PA | 585 | GF21096-PA | 1..585 | 1..597 | 1903 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24616-PA | 600 | GG24616-PA | 1..600 | 1..597 | 3069 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13204-PA | 633 | GH13204-PA | 286..631 | 254..597 | 1437 | 81.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S-PA | 597 | CG4385-PA | 1..597 | 1..597 | 3157 | 100 | Plus |
S-PB | 597 | CG4385-PB | 1..597 | 1..597 | 3157 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21985-PA | 752 | GI21985-PA | 402..750 | 254..597 | 1415 | 81.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15087-PA | 644 | GL15087-PA | 1..644 | 1..597 | 1895 | 73.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18149-PA | 642 | GA18149-PA | 1..642 | 1..597 | 1885 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16631-PA | 271 | GM16631-PA | 1..271 | 315..597 | 1313 | 91.5 | Plus |
Dsec\GM16630-PA | 321 | GM16630-PA | 1..212 | 1..212 | 1067 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22931-PA | 596 | GD22931-PA | 1..596 | 1..597 | 3143 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16115-PA | 635 | GJ16115-PA | 1..633 | 1..597 | 1531 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24332-PA | 630 | GK24332-PA | 3..630 | 2..597 | 1618 | 62.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15810-PA | 599 | GE15810-PA | 1..599 | 1..597 | 3089 | 96.2 | Plus |
Translation from 203 to 1996
> AT04225.hyp MSQQVFSAHPALAVDQLQQAEQEEHNTSSNHHQQRSATQSRRHTKAAPKK FTLSRSCAGGGSGTLSGVHQQVKPSPSNPAISPECRKTLPVRTNYAAVDD DDDIECEDVDEVNFGQQEKERERETRQPTKDCGTDETDHVQQRHKNTMTT SATAASRHHHQDGGGGDQSDLSSVISSPSVSTVSSPLSTPTRLPQALQQQ LHCCQKSTGMESRARTSPQQIQHPHRQHHQQQHHHHHHHHHLTAAGCTGG GGGGGGSGGSGSCKAKKLDPRLNPSPYRQLLPIALCLLSFAAVFATLIVY MDTTEIRHQQFRLNMSRDYELNGVAQDDPALIDFLRQIHMGKYLGKASPK VAAAASVGVGPPPNSPRLAAAGSTFGSGNSSGSGADQLAHYVADLVGGKM NGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVEPEPRWYFTLRKQNAQRA RMQVVHACVSPNTYPKEITIHNEDVRINSLHDEETSWFNSRVKCFPLYTI MLACERTEYDLLSLGVQGHELEILQTLPFDKVKIDVISIHLLEDHEDVAD YVLDITRFLAGKSYKLQRKIGRNYFYQRLNASASRTRKKDILLLKTP*