Clone AT04225 Report

Search the DGRC for AT04225

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:42
Well:25
Vector:pOTB7
Associated Gene/TranscriptS-RA
Protein status:AT04225.pep: gold
Preliminary Size:3024
Sequenced Size:2262

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4385 2002-01-01 Sim4 clustering to Release 2
CG4385 2002-04-21 Blastp of sequenced clone
CG4385 2003-01-01 Sim4 clustering to Release 3
S 2008-04-29 Release 5.5 accounting
S 2008-08-15 Release 5.9 accounting
S 2008-12-18 5.12 accounting

Clone Sequence Records

AT04225.complete Sequence

2262 bp (2262 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113201

> AT04225.complete
CCGACGCTTGTCTGCTCTCCACCCGCGCATCAAACGTCGAAAAATCGTAA
CGTCGCGAGTGCTACGCGGTGGCCAGGAGGAAAATTCGCCAGCAATAGCA
ACACTTGGACCGAAAATCTAAAGGAAACTGGGAAATGATGCGGCTGTAGA
AGAGGACTTTCAACCAGGAGGTACACGAGATTGAAGGAACCCACATAGGA
GTCATGTCGCAGCAAGTGTTCTCGGCGCATCCAGCGCTGGCGGTGGACCA
GCTGCAGCAGGCGGAACAAGAGGAGCACAATACCAGTAGTAATCATCACC
AGCAGAGATCGGCGACACAGAGCCGCCGGCATACCAAGGCCGCACCCAAG
AAGTTCACCCTGAGCAGGAGTTGCGCCGGCGGAGGATCGGGAACCCTGAG
CGGAGTCCACCAGCAAGTCAAGCCCAGTCCTTCAAACCCCGCCATCAGTC
CGGAGTGCAGGAAAACACTGCCCGTGCGAACAAACTATGCGGCGGTGGAT
GACGACGATGACATCGAGTGCGAGGATGTGGACGAGGTGAACTTTGGCCA
GCAGGAGAAGGAGCGGGAGCGGGAGACCCGGCAACCAACCAAAGACTGTG
GCACCGATGAGACGGATCATGTGCAGCAGCGCCACAAAAACACAATGACG
ACCTCGGCGACGGCGGCGAGCAGGCACCACCACCAGGACGGAGGAGGAGG
TGACCAGAGCGATCTGAGCAGCGTGATCAGCTCGCCGTCGGTCAGCACAG
TGTCCTCGCCCCTCTCCACGCCCACCAGGCTGCCACAGGCGCTGCAACAG
CAGCTACACTGCTGCCAGAAGTCCACGGGCATGGAGTCCCGGGCGAGAAC
ATCTCCGCAACAGATCCAGCATCCGCACAGACAGCACCACCAGCAGCAGC
ACCATCACCACCACCACCATCACCACCTCACGGCAGCGGGTTGTACGGGC
GGAGGAGGAGGAGGCGGTGGCTCTGGAGGATCGGGATCCTGCAAGGCGAA
GAAGCTCGATCCCCGACTGAATCCCTCGCCCTATCGCCAGCTATTGCCCA
TCGCCCTGTGCCTGCTCTCCTTCGCGGCAGTCTTCGCCACATTAATAGTT
TACATGGACACGACAGAGATTCGCCATCAGCAGTTTCGGCTAAACATGTC
GCGCGACTACGAGCTGAATGGGGTTGCGCAAGACGATCCCGCACTCATTG
ATTTCCTGCGCCAGATCCACATGGGCAAGTACCTGGGCAAGGCGTCGCCC
AAGGTCGCGGCAGCGGCCTCAGTGGGCGTGGGTCCGCCGCCCAACTCGCC
GCGCCTCGCCGCCGCAGGCTCAACATTCGGTAGTGGCAACAGCAGCGGCA
GTGGAGCCGATCAACTGGCCCACTACGTGGCCGACCTAGTGGGCGGCAAG
ATGAACGGCGCGGTGATCCAGTCGCTGAGCGGTCCTCTCGCCCATCTGAT
CACGGCGCCCTGGCTGAGCGAGCAGCTCAACTGGATGGGCGTGCTGGTGG
AGCCGGAGCCGCGCTGGTACTTCACGTTGCGCAAGCAGAATGCCCAGCGG
GCGCGCATGCAGGTGGTGCACGCCTGTGTTTCGCCCAATACCTATCCCAA
AGAGATTACCATACACAACGAGGATGTGCGCATCAATAGTCTGCACGACG
AGGAGACCTCGTGGTTCAACTCGCGTGTCAAATGCTTTCCGCTCTACACA
ATCATGCTGGCATGTGAGCGCACCGAATACGATCTGCTCAGCCTGGGCGT
ACAGGGGCATGAGCTGGAGATCTTGCAGACGCTGCCCTTCGACAAAGTCA
AAATCGATGTGATATCGATACATTTGCTCGAGGATCACGAGGACGTGGCC
GATTACGTGCTGGACATCACCAGGTTCCTGGCGGGCAAGTCCTATAAGCT
GCAGCGCAAGATCGGTCGGAACTACTTCTACCAGCGGCTCAATGCCAGCG
CCAGTCGCACGCGCAAAAAAGATATCCTGCTGCTGAAGACGCCCTAGGCT
CGACCACCGCAACGAACCATCAAAGGATCAAACTGGGCGTCAGCTGCCCA
GACGACATCGAAGTGAAGACAAGCGTTGAACAGCGAAAAATTAAAGTAGT
TACTGAAAGAAATCAAGAAAACACTTGGTAGCGAAGCGAGAGAAGAGCAT
AACTCTCAAACTGAACTCTATGTTATAATGATAATTATTACTATACATAC
GCTACACTAACGATATGGTTTAATATACTGTATACCGATTATGAAAAAAA
AAAAAAAAAAAA

AT04225.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
S.a 5221 S.a 1035..3146 133..2244 10530 99.9 Plus
S.b 5223 S.b 1035..3146 133..2244 10530 99.9 Plus
S-RB 4060 S-RB 1035..3146 133..2244 10530 99.9 Plus
S.a 5221 S.a 86..222 1..137 655 98.5 Plus
S.b 5223 S.b 86..222 1..137 655 98.5 Plus
S-RB 4060 S-RB 86..222 1..137 655 98.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1061110..1062089 1116..137 4795 99.3 Minus
chr2L 23010047 chr2L 1052442..1052932 1604..1114 2395 99.2 Minus
chr2L 23010047 chr2L 1051668..1052143 2243..1768 2365 99.8 Minus
chr2L 23010047 chr2L 1052207..1052373 1769..1603 835 100 Minus
chr2L 23010047 chr2L 1077537..1077673 137..1 685 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1061234..1062213 1116..137 4900 100 Minus
2L 23513712 2L 1052566..1053056 1604..1114 2440 99.8 Minus
2L 23513712 2L 1051791..1052267 2244..1768 2385 100 Minus
2L 23513712 2L 1052331..1052497 1769..1603 835 100 Minus
2L 23513712 2L 1077651..1077787 137..1 655 98.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1061234..1062213 1116..137 4900 100 Minus
2L 23513712 2L 1052566..1053056 1604..1114 2440 99.7 Minus
2L 23513712 2L 1051791..1052267 2244..1768 2385 100 Minus
2L 23513712 2L 1052331..1052497 1769..1603 835 100 Minus
2L 23513712 2L 1077651..1077787 137..1 655 98.5 Minus
Blast to na_te.dros performed 2019-03-16 12:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2774..2937 779..937 139 57.9 Plus

AT04225.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:09:52 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1051668..1052141 1770..2243 99 <- Minus
chr2L 1052207..1052371 1605..1769 100 <- Minus
chr2L 1052442..1052929 1117..1604 99 <- Minus
chr2L 1061110..1062089 137..1116 94 <- Minus
chr2L 1077538..1077673 1..136 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:38:33 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 1..1794 204..1997 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:03:33 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 1..1794 204..1997 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:14:07 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
S-RB 1..1794 204..1997 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:17 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 1..1794 204..1997 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:17 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
S-RB 1..1794 204..1997 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:32 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 25..2267 1..2243 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:03:33 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 25..2267 1..2243 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:14:07 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 25..2267 1..2243 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:17 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 25..2267 1..2243 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:17 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
S-RA 25..2267 1..2243 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:09:52 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1051792..1052265 1770..2243 100 <- Minus
2L 1052331..1052495 1605..1769 100 <- Minus
2L 1052566..1053053 1117..1604 99 <- Minus
2L 1061234..1062213 137..1116 100 <- Minus
2L 1077652..1077787 1..136 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:09:52 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1051792..1052265 1770..2243 100 <- Minus
2L 1052331..1052495 1605..1769 100 <- Minus
2L 1052566..1053053 1117..1604 99 <- Minus
2L 1061234..1062213 137..1116 100 <- Minus
2L 1077652..1077787 1..136 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:09:52 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1051792..1052265 1770..2243 100 <- Minus
2L 1052331..1052495 1605..1769 100 <- Minus
2L 1052566..1053053 1117..1604 99 <- Minus
2L 1061234..1062213 137..1116 100 <- Minus
2L 1077652..1077787 1..136 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:14:07 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1052331..1052495 1605..1769 100 <- Minus
arm_2L 1051792..1052265 1770..2243 100 <- Minus
arm_2L 1052566..1053053 1117..1604 99 <- Minus
arm_2L 1061234..1062213 137..1116 100 <- Minus
arm_2L 1077652..1077787 1..136 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:34 Download gff for AT04225.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1051792..1052265 1770..2243 100 <- Minus
2L 1052331..1052495 1605..1769 100 <- Minus
2L 1052566..1053053 1117..1604 99 <- Minus
2L 1061234..1062213 137..1116 100 <- Minus
2L 1077652..1077787 1..136 98   Minus

AT04225.pep Sequence

Translation from 203 to 1996

> AT04225.pep
MSQQVFSAHPALAVDQLQQAEQEEHNTSSNHHQQRSATQSRRHTKAAPKK
FTLSRSCAGGGSGTLSGVHQQVKPSPSNPAISPECRKTLPVRTNYAAVDD
DDDIECEDVDEVNFGQQEKERERETRQPTKDCGTDETDHVQQRHKNTMTT
SATAASRHHHQDGGGGDQSDLSSVISSPSVSTVSSPLSTPTRLPQALQQQ
LHCCQKSTGMESRARTSPQQIQHPHRQHHQQQHHHHHHHHHLTAAGCTGG
GGGGGGSGGSGSCKAKKLDPRLNPSPYRQLLPIALCLLSFAAVFATLIVY
MDTTEIRHQQFRLNMSRDYELNGVAQDDPALIDFLRQIHMGKYLGKASPK
VAAAASVGVGPPPNSPRLAAAGSTFGSGNSSGSGADQLAHYVADLVGGKM
NGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVEPEPRWYFTLRKQNAQRA
RMQVVHACVSPNTYPKEITIHNEDVRINSLHDEETSWFNSRVKCFPLYTI
MLACERTEYDLLSLGVQGHELEILQTLPFDKVKIDVISIHLLEDHEDVAD
YVLDITRFLAGKSYKLQRKIGRNYFYQRLNASASRTRKKDILLLKTP*

AT04225.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21096-PA 585 GF21096-PA 1..585 1..597 1903 76.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24616-PA 600 GG24616-PA 1..600 1..597 3069 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13204-PA 633 GH13204-PA 286..631 254..597 1437 81.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
S-PA 597 CG4385-PA 1..597 1..597 3157 100 Plus
S-PB 597 CG4385-PB 1..597 1..597 3157 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21985-PA 752 GI21985-PA 402..750 254..597 1415 81.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15087-PA 644 GL15087-PA 1..644 1..597 1895 73.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18149-PA 642 GA18149-PA 1..642 1..597 1885 73.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16631-PA 271 GM16631-PA 1..271 315..597 1313 91.5 Plus
Dsec\GM16630-PA 321 GM16630-PA 1..212 1..212 1067 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22931-PA 596 GD22931-PA 1..596 1..597 3143 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16115-PA 635 GJ16115-PA 1..633 1..597 1531 61.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24332-PA 630 GK24332-PA 3..630 2..597 1618 62.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15810-PA 599 GE15810-PA 1..599 1..597 3089 96.2 Plus

AT04225.hyp Sequence

Translation from 203 to 1996

> AT04225.hyp
MSQQVFSAHPALAVDQLQQAEQEEHNTSSNHHQQRSATQSRRHTKAAPKK
FTLSRSCAGGGSGTLSGVHQQVKPSPSNPAISPECRKTLPVRTNYAAVDD
DDDIECEDVDEVNFGQQEKERERETRQPTKDCGTDETDHVQQRHKNTMTT
SATAASRHHHQDGGGGDQSDLSSVISSPSVSTVSSPLSTPTRLPQALQQQ
LHCCQKSTGMESRARTSPQQIQHPHRQHHQQQHHHHHHHHHLTAAGCTGG
GGGGGGSGGSGSCKAKKLDPRLNPSPYRQLLPIALCLLSFAAVFATLIVY
MDTTEIRHQQFRLNMSRDYELNGVAQDDPALIDFLRQIHMGKYLGKASPK
VAAAASVGVGPPPNSPRLAAAGSTFGSGNSSGSGADQLAHYVADLVGGKM
NGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVEPEPRWYFTLRKQNAQRA
RMQVVHACVSPNTYPKEITIHNEDVRINSLHDEETSWFNSRVKCFPLYTI
MLACERTEYDLLSLGVQGHELEILQTLPFDKVKIDVISIHLLEDHEDVAD
YVLDITRFLAGKSYKLQRKIGRNYFYQRLNASASRTRKKDILLLKTP*

AT04225.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
S-PA 597 CG4385-PA 1..597 1..597 3157 100 Plus
S-PB 597 CG4385-PB 1..597 1..597 3157 100 Plus