Clone AT04270 Report

Search the DGRC for AT04270

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:42
Well:70
Vector:pOTB7
Associated Gene/TranscriptCG7794-RA
Protein status:AT04270.pep: gold
Preliminary Size:1403
Sequenced Size:1569

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7794 2002-01-01 Sim4 clustering to Release 2
CG7794 2002-02-22 Blastp of sequenced clone
CG7794 2003-01-01 Sim4 clustering to Release 3
CG7794 2008-04-29 Release 5.5 accounting
CG7794 2008-08-15 Release 5.9 accounting
CG7794 2008-12-18 5.12 accounting

Clone Sequence Records

AT04270.complete Sequence

1569 bp (1569 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089253

> AT04270.complete
GTTTTCCTTGTTTAGATTGTCAATTCGATTTGATTTTAGAACATTTTGGA
AAACTACATTCCCAGAGAAAGGAAATTAATGGTTAAAATTAAGATATGAC
ACATGTCCGGAAAGGGGGAGATCATCCAGATCCACATTGGCCAGGCCGGT
GTGCAGATAGCCAACGCCTGTTGGGAGCTCTTCTGTCTGGAGCACGGCAT
TTTGGCCAATGGAAGACTAACCCAGTCGCCCATGGACGACTCGTTCCTCA
CGTTCTTTGAGTTCACCAGCCATCAGCCGTGTGTGCAACCTCGACTCGTC
ATGATCGACACGGAGCCCACAGTGATAGATGAAATCCGTACCGGCTCCTA
CCGCAACCTCTTTCATCCGGATACTTTGATTACGGGCAAGGATGACAGTG
GCAGTAACTTCGCCAGGGGCTATAATCTGATGGCCAGCGAGCTGTTGGAT
CGCTCCATGAACGCCATTCGTCGCGTGGCGGATCGTTGCAGAAATCTCAG
GGGTTTCCTGGTCTTTCGAGCAATCGGCGGAGGTTCTGGTTCCGGGCTAG
GGACTCGCATCATGGAGAGACTGGTCGAAGACTTTGGCAAGAAGATGACT
GTTGTGGAGTTCCTCGTTTATCCTTCGCCTTCAATCTCTCCGGTTATTGT
GGAACCCTACAACGCACTGCTGGCTGCCCATTTCTCCATGGACTGCGCCG
ATGTATCGTTTATTGTGGACAATGAAGCTCTATACGACATATGTGCTAAT
ACACTCAATGTCCCTGCTCCCACATATACGAATCTCAATAGGATCATCGC
ACAAGTGGTTTCCAGCTTTACGGCCTCACAGCGTTTTGGTGGCGGATCGA
CCGTGAGTTTTCAGGAGCTGCAGACGAACCTGGTGCCATATCCCCGAATC
CACTATCCGCTGATCAACTACGCACCACTGGTACCCATTTCGCACTCGCA
GTTCGTCAATATGTCGACGGCCCAGCTAACGGGTCAGTGTTTCCAGATGA
GCAACCAAATGGTCAGATGCAATCCCTCGCATGGCAAGTACATGGCCAGT
GTGCTGCTCTACCGCGGTGATATCGCACCCAATGAGATCAATACGGCGCT
GGAGAACATCAAGCGGAACAGGTCTTTCCGTTTTGTCGACTGGTCGCCCA
CGGGCTTTAAGATCGGCGTTAGCCCCATGCCGCCGTACTATGTTCCTGGC
GGCGATCTGGCGCCCACCAATCGCGCCTGCGTGGCCATCTCGAACAACAC
GAACATCCGGATCGCCTGGTGCCGCCTGGTCAACAAGTTCGACAAGCTCT
ATCAGCGGCGAGCCTTCGTCTATCACTATGTGGGCGAAGGACTCGAGGAG
GGCAACTTCAACGAGGCCTCCGAGAACATTTGCCAGCTGGTGCACGACTA
TCTGGAGGTGGATGCATCGGCTCCCACCTCGCGACGCGATTCCGATCCGG
AGGAGGACTCTCTCAACTAAAGTGTGCTCTGTATGTGCCCCTTTTGTCTG
CATTTTTGAATCAACGAAATTTTAATAAATTTAACGTATTGAATATTTTA
AAAAAAAAAAAAAAAAAAA

AT04270.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7794-RA 1575 CG7794-RA 5..1554 1..1550 7645 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 13848868..13849784 633..1549 4540 99.7 Plus
chr3R 27901430 chr3R 13848113..13848440 1..328 1640 100 Plus
chr3R 27901430 chr3R 13848497..13848802 327..632 1530 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18024462..18025379 633..1550 4515 99.5 Plus
3R 32079331 3R 18023707..18024034 1..328 1640 100 Plus
3R 32079331 3R 18024091..18024396 327..632 1500 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17765293..17766210 633..1550 4515 99.4 Plus
3R 31820162 3R 17764538..17764865 1..328 1640 100 Plus
3R 31820162 3R 17764922..17765227 327..632 1500 99.3 Plus
Blast to na_te.dros performed on 2019-03-16 09:09:43 has no hits.

AT04270.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:10:49 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 13848113..13848440 1..328 100 -> Plus
chr3R 13848499..13848802 329..632 100 -> Plus
chr3R 13848868..13849784 633..1549 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:51:45 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 1..1368 103..1470 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:43:32 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 1..1368 103..1470 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:54:51 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 1..1368 103..1470 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:11:55 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 1..1368 103..1470 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:28 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 1..1368 103..1470 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:08 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 1..1549 1..1549 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:32 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 1..1549 1..1549 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:51 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 1..1549 1..1549 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:11:55 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 1..1549 1..1549 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:28 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7794-RA 1..1549 1..1549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:49 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18023707..18024034 1..328 100 -> Plus
3R 18024093..18024396 329..632 99 -> Plus
3R 18024462..18025378 633..1549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:49 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18023707..18024034 1..328 100 -> Plus
3R 18024093..18024396 329..632 99 -> Plus
3R 18024462..18025378 633..1549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:49 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18023707..18024034 1..328 100 -> Plus
3R 18024093..18024396 329..632 99 -> Plus
3R 18024462..18025378 633..1549 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:51 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13849815..13850118 329..632 99 -> Plus
arm_3R 13849429..13849756 1..328 100 -> Plus
arm_3R 13850184..13851100 633..1549 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:26 Download gff for AT04270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17764538..17764865 1..328 100 -> Plus
3R 17764924..17765227 329..632 99 -> Plus
3R 17765293..17766209 633..1549 99   Plus

AT04270.hyp Sequence

Translation from 102 to 1469

> AT04270.hyp
MSGKGEIIQIHIGQAGVQIANACWELFCLEHGILANGRLTQSPMDDSFLT
FFEFTSHQPCVQPRLVMIDTEPTVIDEIRTGSYRNLFHPDTLITGKDDSG
SNFARGYNLMASELLDRSMNAIRRVADRCRNLRGFLVFRAIGGGSGSGLG
TRIMERLVEDFGKKMTVVEFLVYPSPSISPVIVEPYNALLAAHFSMDCAD
VSFIVDNEALYDICANTLNVPAPTYTNLNRIIAQVVSSFTASQRFGGGST
VSFQELQTNLVPYPRIHYPLINYAPLVPISHSQFVNMSTAQLTGQCFQMS
NQMVRCNPSHGKYMASVLLYRGDIAPNEINTALENIKRNRSFRFVDWSPT
GFKIGVSPMPPYYVPGGDLAPTNRACVAISNNTNIRIAWCRLVNKFDKLY
QRRAFVYHYVGEGLEEGNFNEASENICQLVHDYLEVDASAPTSRRDSDPE
EDSLN*

AT04270.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7794-PA 455 CG7794-PA 1..455 1..455 2397 100 Plus
alphaTub84B-PA 450 CG1913-PA 3..435 6..436 1279 53.6 Plus
alphaTub84D-PA 450 CG2512-PA 3..435 6..436 1270 53.6 Plus
alphaTub85E-PA 449 CG9476-PA 3..441 6..442 1264 52.8 Plus
alphaTub67C-PA 462 CG8308-PA 3..461 6..451 1158 48.8 Plus

AT04270.pep Sequence

Translation from 102 to 1469

> AT04270.pep
MSGKGEIIQIHIGQAGVQIANACWELFCLEHGILANGRLTQSPMDDSFLT
FFEFTSHQPCVQPRLVMIDTEPTVIDEIRTGSYRNLFHPDTLITGKDDSG
SNFARGYNLMASELLDRSMNAIRRVADRCRNLRGFLVFRAIGGGSGSGLG
TRIMERLVEDFGKKMTVVEFLVYPSPSISPVIVEPYNALLAAHFSMDCAD
VSFIVDNEALYDICANTLNVPAPTYTNLNRIIAQVVSSFTASQRFGGGST
VSFQELQTNLVPYPRIHYPLINYAPLVPISHSQFVNMSTAQLTGQCFQMS
NQMVRCNPSHGKYMASVLLYRGDIAPNEINTALENIKRNRSFRFVDWSPT
GFKIGVSPMPPYYVPGGDLAPTNRACVAISNNTNIRIAWCRLVNKFDKLY
QRRAFVYHYVGEGLEEGNFNEASENICQLVHDYLEVDASAPTSRRDSDPE
EDSLN*

AT04270.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16752-PA 452 GF16752-PA 1..452 1..452 2197 91.4 Plus
Dana\GF17649-PA 450 GF17649-PA 3..435 6..436 1265 53.6 Plus
Dana\GF11529-PA 449 GF11529-PA 3..442 6..443 1250 52.7 Plus
Dana\GF25153-PA 462 GF25153-PA 3..446 6..436 1131 48.7 Plus
Dana\GF12605-PA 447 GF12605-PA 3..422 6..433 691 34 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22615-PA 455 GG22615-PA 1..455 1..455 2427 98.9 Plus
Dere\GG13808-PA 450 GG13808-PA 3..435 6..436 1265 53.6 Plus
Dere\GG14119-PA 450 GG14119-PA 3..435 6..436 1257 53.6 Plus
Dere\GG17337-PA 449 GG17337-PA 3..442 6..443 1252 52.7 Plus
Dere\GG15399-PA 462 GG15399-PA 3..461 6..451 1154 49 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15056-PA 449 GH15056-PA 1..449 1..451 2010 86.5 Plus
Dgri\GH22334-PA 455 GH22334-PA 7..454 4..447 1266 52.9 Plus
Dgri\GH19001-PA 450 GH19001-PA 3..435 6..436 1265 53.6 Plus
Dgri\GH16316-PA 460 GH16316-PA 3..446 6..436 1137 49.8 Plus
Dgri\GH20203-PA 447 GH20203-PA 3..422 6..433 691 34 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7794-PA 455 CG7794-PA 1..455 1..455 2397 100 Plus
alphaTub84B-PA 450 CG1913-PA 3..435 6..436 1279 53.6 Plus
alphaTub84D-PA 450 CG2512-PA 3..435 6..436 1270 53.6 Plus
alphaTub85E-PA 449 CG9476-PA 3..441 6..442 1264 52.8 Plus
alphaTub67C-PA 462 CG8308-PA 3..461 6..451 1158 48.8 Plus
betaTub97EF-PB 457 CG4869-PB 3..440 6..451 757 33.1 Plus
betaTub97EF-PC 457 CG4869-PC 3..440 6..451 753 33.1 Plus
betaTub56D-PB 447 CG9277-PB 3..439 6..452 742 33 Plus
betaTub85D-PA 446 CG9359-PA 3..441 6..452 734 32.1 Plus
betaTub60D-PB 453 CG3401-PB 3..442 6..450 718 32.7 Plus
betaTub60D-PA 454 CG3401-PA 3..443 6..450 718 32.7 Plus
betaTub56D-PA 456 CG9277-PA 25..448 20..452 710 32.6 Plus
CG32396-PA 462 CG32396-PA 3..421 6..433 635 31.2 Plus
gammaTub23C-PA 475 CG3157-PA 4..429 6..425 520 30 Plus
gammaTub37C-PB 457 CG17566-PB 4..436 6..433 496 28.3 Plus
gammaTub37C-PA 457 CG17566-PA 4..436 6..433 496 28.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23711-PA 452 GI23711-PA 1..447 1..448 2119 88.8 Plus
Dmoj\GI23057-PA 450 GI23057-PA 3..435 6..436 1265 53.6 Plus
Dmoj\GI23620-PA 414 GI23620-PA 11..412 45..448 1137 52.2 Plus
Dmoj\GI13261-PA 461 GI13261-PA 3..446 6..436 1119 48.9 Plus
Dmoj\GI20729-PA 447 GI20729-PA 3..422 6..433 691 34 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12586-PA 458 GL12586-PA 1..451 1..451 2174 90.5 Plus
Dper\GL12416-PA 1216 GL12416-PA 769..1201 6..436 1274 53.6 Plus
Dper\GL12714-PA 464 GL12714-PA 3..446 6..436 1133 48.9 Plus
Dper\GL16725-PA 447 GL16725-PA 3..422 6..433 691 34 Plus
Dper\GL23875-PA 511 GL23875-PA 3..495 6..452 649 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20592-PA 458 GA20592-PA 1..451 1..451 2174 90.5 Plus
Dpse\GA15128-PA 450 GA15128-PA 3..435 6..436 1265 53.6 Plus
Dpse\GA20973-PA 464 GA20973-PA 3..446 6..436 1133 48.9 Plus
Dpse\GA27086-PB 455 GA27086-PB 3..439 6..452 713 34.6 Plus
Dpse\GA27686-PA 447 GA27686-PA 3..422 6..433 691 34 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15273-PA 455 GM15273-PA 1..455 1..455 2421 98.7 Plus
Dsec\GM10931-PA 450 GM10931-PA 3..435 6..436 1265 53.6 Plus
Dsec\GM10965-PA 450 GM10965-PA 3..435 6..436 1256 53.3 Plus
Dsec\GM26223-PA 449 GM26223-PA 3..442 6..443 1252 52.7 Plus
Dsec\GM25175-PA 462 GM25175-PA 3..461 6..451 1147 48.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19196-PA 455 GD19196-PA 1..455 1..455 2421 98.7 Plus
Dsim\GD19909-PA 450 GD19909-PA 3..435 6..436 1265 53.6 Plus
Dsim\GD19940-PA 450 GD19940-PA 3..435 6..436 1256 53.3 Plus
Dsim\GD20767-PA 449 GD20767-PA 3..442 6..443 1252 52.7 Plus
Dsim\GD14204-PA 462 GD14204-PA 3..461 6..451 1147 48.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23270-PA 450 GJ23270-PA 1..450 1..451 2173 90.5 Plus
Dvir\GJ24568-PA 450 GJ24568-PA 3..435 6..436 1265 53.6 Plus
Dvir\GJ11156-PA 414 GJ11156-PA 11..412 45..448 1138 52.2 Plus
Dvir\GJ12031-PA 460 GJ12031-PA 3..446 6..436 1119 48.7 Plus
Dvir\GJ20466-PA 447 GJ20466-PA 3..422 6..433 691 34 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11238-PA 456 GK11238-PA 1..448 1..448 2194 91.7 Plus
Dwil\GK14362-PA 449 GK14362-PA 3..447 6..448 1265 52.8 Plus
Dwil\GK12743-PA 450 GK12743-PA 3..435 6..436 1265 53.6 Plus
Dwil\GK16627-PA 462 GK16627-PA 3..446 6..436 1136 48.9 Plus
Dwil\GK15706-PA 447 GK15706-PA 3..422 6..433 691 34 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25507-PA 455 GE25507-PA 1..455 1..455 2406 97.8 Plus
Dyak\alphaTub84B-PA 450 GE24900-PA 3..435 6..436 1265 53.6 Plus
Dyak\GE24934-PA 450 GE24934-PA 3..435 6..436 1257 53.6 Plus
Dyak\GE24741-PA 449 GE24741-PA 3..442 6..443 1252 52.7 Plus
Dyak\GE20865-PA 462 GE20865-PA 3..461 6..451 1148 48.6 Plus