Clone AT04275 Report

Search the DGRC for AT04275

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:42
Well:75
Vector:pOTB7
Associated Gene/TranscriptMenl-2-RD
Protein status:AT04275.pep: gold
Preliminary Size:2015
Sequenced Size:2145

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7969 2002-01-01 Sim4 clustering to Release 2
CG30097 2002-02-22 Blastp of sequenced clone
Menl-2 2008-04-29 Release 5.5 accounting
Menl-2 2008-08-15 Release 5.9 accounting
Menl-1 2008-08-15 Release 5.9 accounting
Menl-1 2008-12-18 5.12 accounting
Menl-2 2008-12-18 5.12 accounting

Clone Sequence Records

AT04275.complete Sequence

2145 bp (2145 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089254

> AT04275.complete
CCCAAATGAAAAGGTACCCATAAAAATTCGGACTTGCAAAAAAAATTTTA
AACCATGGAATTTCGCCGGCTGCATCCATTGCTGCGCCTTGCATCCCGTC
CTCTTCTGAGTTCCAGCAGGCGGTTCAGCGTTTATGATGACGAAATGGAA
CAAATAACAAGACCTGACTGGCATGTTGTTATGAATGGAAAGTACAATAA
GGTGGGGCCTTGCGTTCACCATTAAGGAACGGCAACGTTTGGGCATCATG
GGATTGATGCCCTGCTCCGTGCGCTCCATGGATGACCAGATGAATGCGGC
CCTGGCGAATTTTGAGGCGAGACCCACAGATATCGCCCGCTTTACATACT
TGAGTGCTGTCCACCATCGACACCGGCGACTGTACTACCGGTTCATCAAG
GAGAACATCGAGAAATCGCTACCCATTGTTTATACACCAACGGTGGGCGA
TGTGGTGGCCACCTATGGACTGAACTTCCAGCAGGCCATCAGCCTGTTCA
TCAGCATTCACGACAAGGGCCACATCCGGGATCTTATGCACAACTGGGTG
GACGAGGGCGTTAAGGCCATCTGTGTGACGGATGGCGGAAGGGTACTGGG
TCTCGGGGACATGGGTGCCAATGCGATGGGCATTAGTTTGGGCAAAATGA
TCCTATATACGGCTTTGGGTAGCATTCCGCCGAGCACACTAATGCCCGTT
TGCCTCGACGTGGGTACCGATAATCAGGCCCTGCTGCAGGATCCCCTTTA
TGTTGGGGCACGAATACCGCGGGTCAAGGGACCGGAATACGATGAACTGG
TGGATGAATTTATGGAGTCGGCGGTTAAATGCTTCGGAAACAACACCTTC
ATCCACTTCGAGGACTTTGCCACTCCAAATGCCTTGAAGTTCTTGGAAAA
ATACCAGTACAAGTACTGTTGCTTCAACGATGATATTCAGGGAACGGGAG
CCACTGGCCTGGCCGCGTTCATCAATGTGGAACGCATCACTGGCCGTAAA
TTGGAGGACACCGTATTTCTCTTCGTAGGAGCTGGGAGTGCGGCATTGGG
TATCGCCAATATGCTGGCCATGGAACTGGAGGTACGCGGCATTCCTGCCG
AGGAGGCAACTAAAAATATCTACTTGATGGATGTCAATGGTATTTTGACA
CCGGAGTCACCTAATCCACCGGAGATGGGTAAAATATTTATAAAGTCCAT
GGAGCCCATGAAGGATATGATGGCCGTGCTGAAGAAGCTTAAGCCATCCG
TACTTGTTGGAGCAACTGGTGTGGGTGGAATTTTCAATGAAGAAGTACTG
AAAACCATGGCGAAAAATCACGAACGTCCTGCAGTTTTTCCCCTCTCGAA
TCCAACTGCCAACTCGGAATGCACCGCCGAGCAGGCTTTTACACACACTG
AGGGTCGCGTGCTCTTCGGATCCGGATCGCCCTTTCCACCAGTGGTCATC
AATGGCAAAAGATATCGCCCCGCTCAGGCCAACAACTGTCTGACTTTTCC
GGGCATCGCATTGGCCGCCATTACGGCCAAGGCCCGGTATCTGCCAAACG
AAGTATTTTCCGTTGTGTCGCACGAGCTGGCCAGGAATACACCGCAGGAA
CTACTTGACGAAGGCACTCTGTTTCCGCCCATCAAGGATGCACATAATGT
GGCCTTCAATGTGGGCGTTGCCATGACTCAGTATCTAATTGATAATGATC
TTTCAAATGTTTACCCAAAGCCCGATGATATCTGTGAGTTTGTCAAGAGA
AGTCTGTATAAGTTCGATTACAGAAATTCCCTGCCAACTACGTGGGACTA
TCCCGTGGAACCGCCAACACCGAAACCCAAAACCAAACCCAAAACGAAGC
CGAAGGAATAAAGCACGAAGTAAACTTGGCCGGGATACCTTTATATCGAA
CACTTTTGACCTAAGAAAGAAAGCCTTGTGTGTAATTAGTTGCAGATGCA
AGTGTACAAAGACCTACATACACAAAGACATATACAAGCTGGCACGATAA
ATGCCCGACATTTTAACGTTATTATTGTCCTGTCAACGGGAAGCCAGTTG
ACATGCTCGTGCGCCTGTGTGTGTGTTTGTGTATCCAGCTGATTTGCATA
TAAAATAGGACGAAATGTCTGCTCACCAAAAAAAAAAAAAAAAAA

AT04275.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Menl-2-RD 2127 Menl-2-RD 1..2127 1..2127 10635 100 Plus
Menl-1-RD 4249 Menl-1-RD 2076..4203 1..2132 10575 99.8 Plus
Menl-2-RA 2195 Menl-2-RA 68..2195 1..2132 10575 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12302987..12304185 1403..205 5980 99.9 Minus
chr2R 21145070 chr2R 12302113..12302543 2127..1697 2140 99.8 Minus
chr2R 21145070 chr2R 12302626..12302922 1697..1401 1470 99.7 Minus
chr2R 21145070 chr2R 12304245..12304450 206..1 1030 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16415689..16416887 1403..205 5995 100 Minus
2R 25286936 2R 16414810..16415245 2132..1697 2180 100 Minus
2R 25286936 2R 16415328..16415624 1697..1401 1485 100 Minus
2R 25286936 2R 16416945..16417150 206..1 1030 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16416888..16418086 1403..205 5995 100 Minus
2R 25260384 2R 16416009..16416444 2132..1697 2180 100 Minus
2R 25260384 2R 16416527..16416823 1697..1401 1485 100 Minus
2R 25260384 2R 16418144..16418349 206..1 1030 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:49:01 has no hits.

AT04275.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:50:10 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12302113..12302542 1698..2127 99 <- Minus
chr2R 12302626..12302920 1403..1697 99 <- Minus
chr2R 12302988..12304184 206..1402 99 <- Minus
chr2R 12304246..12304450 1..205 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:51:46 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RA 1..1803 55..1861 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:43:34 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RE 1..1803 55..1861 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:47:04 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RA 1..1803 55..1861 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:11:56 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RA 1..1803 55..1861 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:43:16 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RA 1..1803 55..1861 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:10 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RA 1..2115 9..2127 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:34 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RD 1..2127 1..2127 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:47:04 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RD 1..2127 1..2127 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:11:56 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RA 1..2115 9..2127 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:43:16 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
Menl-2-RD 1..2127 1..2127 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:10 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16416946..16417150 1..205 100   Minus
2R 16414815..16415244 1698..2127 100 <- Minus
2R 16415328..16415622 1403..1697 100 <- Minus
2R 16415690..16416886 206..1402 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:10 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16416946..16417150 1..205 100   Minus
2R 16414815..16415244 1698..2127 100 <- Minus
2R 16415328..16415622 1403..1697 100 <- Minus
2R 16415690..16416886 206..1402 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:10 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16416946..16417150 1..205 100   Minus
2R 16414815..16415244 1698..2127 100 <- Minus
2R 16415328..16415622 1403..1697 100 <- Minus
2R 16415690..16416886 206..1402 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:47:04 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12302320..12302749 1698..2127 100 <- Minus
arm_2R 12302833..12303127 1403..1697 100 <- Minus
arm_2R 12303195..12304391 206..1402 100 <- Minus
arm_2R 12304451..12304655 1..205 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:27 Download gff for AT04275.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16416527..16416821 1403..1697 100 <- Minus
2R 16416014..16416443 1698..2127 100 <- Minus
2R 16416889..16418085 206..1402 100 <- Minus
2R 16418145..16418349 1..205 100   Minus

AT04275.pep Sequence

Translation from 184 to 1860

> AT04275.pep
MESTIRWGLAFTIKERQRLGIMGLMPCSVRSMDDQMNAALANFEARPTDI
ARFTYLSAVHHRHRRLYYRFIKENIEKSLPIVYTPTVGDVVATYGLNFQQ
AISLFISIHDKGHIRDLMHNWVDEGVKAICVTDGGRVLGLGDMGANAMGI
SLGKMILYTALGSIPPSTLMPVCLDVGTDNQALLQDPLYVGARIPRVKGP
EYDELVDEFMESAVKCFGNNTFIHFEDFATPNALKFLEKYQYKYCCFNDD
IQGTGATGLAAFINVERITGRKLEDTVFLFVGAGSAALGIANMLAMELEV
RGIPAEEATKNIYLMDVNGILTPESPNPPEMGKIFIKSMEPMKDMMAVLK
KLKPSVLVGATGVGGIFNEEVLKTMAKNHERPAVFPLSNPTANSECTAEQ
AFTHTEGRVLFGSGSPFPPVVINGKRYRPAQANNCLTFPGIALAAITAKA
RYLPNEVFSVVSHELARNTPQELLDEGTLFPPIKDAHNVAFNVGVAMTQY
LIDNDLSNVYPKPDDICEFVKRSLYKFDYRNSLPTTWDYPVEPPTPKPKT
KPKTKPKE*

AT04275.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11265-PA 615 GF11265-PA 43..578 2..537 1870 62.7 Plus
Dana\GF11264-PA 603 GF11264-PA 54..603 9..557 1503 49.6 Plus
Dana\GF23280-PA 622 GF23280-PA 70..607 8..543 1357 45.7 Plus
Dana\GF18099-PA 814 GF18099-PA 281..812 8..537 1261 43.6 Plus
Dana\GF11263-PA 619 GF11263-PA 69..599 8..537 742 30.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22268-PA 602 GG22268-PA 43..602 1..558 2648 88.6 Plus
Dere\GG22267-PA 610 GG22267-PA 58..597 8..546 1510 49.6 Plus
Dere\GG11530-PA 617 GG11530-PA 65..602 8..543 1356 46.1 Plus
Dere\GG17100-PA 769 GG17100-PA 236..767 8..537 1249 43.6 Plus
Dere\GG22266-PA 634 GG22266-PA 85..607 8..530 840 31.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20647-PA 608 GH20647-PA 58..604 8..553 1532 51.6 Plus
Dgri\GH17523-PA 629 GH17523-PA 77..614 8..543 1356 45 Plus
Dgri\GH20613-PA 869 GH20613-PA 305..842 8..543 1356 45 Plus
Dgri\GH19210-PA 815 GH19210-PA 282..813 8..537 1220 42.9 Plus
Dgri\GH20645-PA 615 GH20645-PA 65..587 10..529 783 30.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Menl-2-PD 558 CG7969-PD 1..558 1..558 2931 100 Plus
Menl-2-PE 600 CG7969-PE 50..600 8..558 2892 100 Plus
Menl-2-PA 600 CG7969-PA 50..600 8..558 2892 100 Plus
Menl-1-PD 610 CG7964-PD 59..597 9..546 1451 49 Plus
Men-b-PA 617 CG5889-PA 65..602 8..543 1336 45.8 Plus
Men-b-PB 621 CG5889-PB 65..602 8..543 1336 45.8 Plus
Men-b-PC 624 CG5889-PC 65..602 8..543 1336 45.8 Plus
Men-PC 578 CG10120-PC 45..576 8..537 1206 43.6 Plus
Men-PA 759 CG10120-PA 226..757 8..537 1206 43.6 Plus
Men-PB 763 CG10120-PB 230..761 8..537 1206 43.6 Plus
CG7848-PA 633 CG7848-PA 78..609 2..533 775 30.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19012-PA 609 GI19012-PA 58..599 8..548 1491 51.4 Plus
Dmoj\GI23201-PA 622 GI23201-PA 70..607 8..543 1356 44.8 Plus
Dmoj\GI24244-PA 818 GI24244-PA 285..816 8..537 1255 43 Plus
Dmoj\GI19011-PA 610 GI19011-PA 52..587 5..534 754 29.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11345-PA 597 GL11345-PA 45..594 6..553 1863 60 Plus
Dper\GL11344-PA 602 GL11344-PA 48..586 8..546 1564 50.3 Plus
Dper\GL23904-PA 625 GL23904-PA 73..610 8..543 1348 45 Plus
Dper\GL23167-PA 438 GL23167-PA 1..436 104..537 1051 43.3 Plus
Dper\GL11343-PA 617 GL11343-PA 63..590 5..530 816 31.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15647-PA 597 GA15647-PA 45..594 6..553 1859 59.8 Plus
Dpse\GA24692-PA 602 GA24692-PA 48..586 8..546 1564 50.3 Plus
Dpse\GA19206-PB 632 GA19206-PB 73..610 8..543 1346 45 Plus
Dpse\GA19206-PC 629 GA19206-PC 73..610 8..543 1344 45 Plus
Dpse\GA19206-PA 625 GA19206-PA 73..610 8..543 1343 45 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20057-PA 598 GM20057-PA 43..598 1..558 2862 95.9 Plus
Dsec\GM20056-PA 610 GM20056-PA 58..597 8..546 1496 49.1 Plus
Dsec\GM10372-PA 617 GM10372-PA 65..602 8..543 1361 45.6 Plus
Dsec\GM25984-PA 759 GM25984-PA 226..757 8..537 1242 43.6 Plus
Dsec\GM20055-PA 633 GM20055-PA 78..606 2..530 803 31.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25538-PA 600 GD25538-PA 43..600 1..558 2861 95.3 Plus
Dsim\GD25537-PA 610 GD25537-PA 58..597 8..546 1505 49.4 Plus
Dsim\Men-PA 759 GD20544-PA 226..757 8..537 1245 43.6 Plus
Dsim\GD25536-PA 627 GD25536-PA 72..600 2..530 806 31.7 Plus
Dsim\GD21330-PA 244 GD21330-PA 65..233 8..177 420 47.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22862-PA 623 GJ22862-PA 71..608 8..543 1356 44.8 Plus
Dvir\GJ19975-PA 456 GJ19975-PA 1..452 102..551 1235 53 Plus
Dvir\GJ10817-PA 816 GJ10817-PA 283..814 8..537 1224 43.4 Plus
Dvir\GJ19974-PA 610 GJ19974-PA 53..582 3..529 697 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21603-PA 801 GK21603-PA 261..796 8..543 1722 57.5 Plus
Dwil\GK11883-PA 622 GK11883-PA 70..607 8..543 1355 45 Plus
Dwil\GK10867-PA 842 GK10867-PA 309..840 8..537 1256 43.2 Plus
Dwil\GK21699-PA 616 GK21699-PA 58..596 2..537 854 32.4 Plus
Dwil\GK21603-PA 801 GK21603-PA 1..261 148..407 732 53.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14061-PA 602 GE14061-PA 43..584 1..542 2659 90 Plus
Dyak\GE14060-PA 609 GE14060-PA 59..609 9..558 1507 48.6 Plus
Dyak\GE23720-PA 617 GE23720-PA 65..602 8..543 1360 45.6 Plus
Dyak\GE24490-PA 768 GE24490-PA 235..766 8..537 1247 43.8 Plus
Dyak\GE14059-PA 638 GE14059-PA 83..611 2..530 820 31.6 Plus

AT04275.hyp Sequence

Translation from 184 to 1860

> AT04275.hyp
MESTIRWGLAFTIKERQRLGIMGLMPCSVRSMDDQMNAALANFEARPTDI
ARFTYLSAVHHRHRRLYYRFIKENIEKSLPIVYTPTVGDVVATYGLNFQQ
AISLFISIHDKGHIRDLMHNWVDEGVKAICVTDGGRVLGLGDMGANAMGI
SLGKMILYTALGSIPPSTLMPVCLDVGTDNQALLQDPLYVGARIPRVKGP
EYDELVDEFMESAVKCFGNNTFIHFEDFATPNALKFLEKYQYKYCCFNDD
IQGTGATGLAAFINVERITGRKLEDTVFLFVGAGSAALGIANMLAMELEV
RGIPAEEATKNIYLMDVNGILTPESPNPPEMGKIFIKSMEPMKDMMAVLK
KLKPSVLVGATGVGGIFNEEVLKTMAKNHERPAVFPLSNPTANSECTAEQ
AFTHTEGRVLFGSGSPFPPVVINGKRYRPAQANNCLTFPGIALAAITAKA
RYLPNEVFSVVSHELARNTPQELLDEGTLFPPIKDAHNVAFNVGVAMTQY
LIDNDLSNVYPKPDDICEFVKRSLYKFDYRNSLPTTWDYPVEPPTPKPKT
KPKTKPKE*

AT04275.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Menl-2-PD 558 CG7969-PD 1..558 1..558 2931 100 Plus
Menl-2-PE 600 CG7969-PE 50..600 8..558 2892 100 Plus
Menl-2-PA 600 CG7969-PA 50..600 8..558 2892 100 Plus
Menl-1-PD 610 CG7964-PD 59..597 9..546 1451 49 Plus
Men-b-PA 617 CG5889-PA 65..602 8..543 1336 45.8 Plus