Clone AT04280 Report

Search the DGRC for AT04280

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:42
Well:80
Vector:pOTB7
Associated Gene/TranscriptCG31550-RC
Protein status:AT04280.pep: gold
Preliminary Size:1279
Sequenced Size:2613

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12167 2002-01-01 Sim4 clustering to Release 2
CG31550 2002-02-22 Blastp of sequenced clone
CG31550 2008-04-29 Release 5.5 accounting
CG31550 2008-08-15 Release 5.9 accounting
CG31550 2008-12-18 5.12 accounting

Clone Sequence Records

AT04280.complete Sequence

2613 bp (2613 high quality bases) assembled on 2002-02-22

GenBank Submission: AY095508

> AT04280.complete
CCTCGTGCCGGTGATGCGAAGACTTGGTATAATTCCAAGTATGTGAGTTG
GTTACACTGTTGCTTTGCTGGAAAAGAAAATTGTGGAATAAAACGGAGTC
TGCGGCATTGGGAATTATGTCACAGCGAAATCACAGAGTGGACCGCTTCG
CCCAGATGACAAAGCAGGAGGAGATCATAGCCAAGAAACGGCAAGAGATC
CTCGAGAAGCAGAAGACGGCACAGCTGGCGAAGGCGGTGGCCGCGGCGCA
GAACTTGGCAGCGCAGCTGAAAACCGAGACGACTGTGGGAAAACCCATTG
GCAACGAGGTGGAGTATGAGGAGGATGCCCGATACCTGGACACCGCCGTC
CAGGACACCTCTCTAGCGGCCGGCGAGGATGGCCTGGAGGCTGTTCACAT
TGAGGCCACGGCCAGCAAGGGAAAGACGGAGGACGCGGTGGCCCCCAAGA
CGCTGAATAGCTTCACTGGCAAAACGGGCAAGATCACATTTGGCATGAAG
CGTCAGCAGCTGCCTCAGCCCAGTGTTGAGCAGCCACCACCGAAGGTTAA
AAACACTTTCTGCAACGATGGTTCCTTTTTAGAGAACTTCAAGAAAATAC
TCGAAAAGCACGAAAAGCCTCCGCAGCCCTTGATTGTTCCGCCGGTTCCA
GTGCCCAGCGCCGAGGAGAACAAAGCCGTGGACACGGAAACAGCAGAGCA
GAACAACAGTCCCCAGCTAGAGGCGGCCATCGCCATAAGCTCGGCAGCAG
CCATGGCTACCTCCATTACGGTGACCAGCTCGGCGCCAACTCATTTGGCT
TTTGGACTACCCGTGCAAGCAGTGCAGCCACCACCGCCGCCTCCATTTGC
ATTCAATCCTACGCTTTTGCAACAGGGACCACCGCAGATGCAGCTGCCAG
CTGCATTCTTTCACGGCCATTTGCCTCTGCACTTGCATCCGGCGGCAGTT
GCTCCTCCGCCACCTCCACCGCCTCCACAGCTGCCCATCGCTCTGACCAA
CATGGGACAGATTTACATGCAGCTTGGTCCGTCTCCAGTGGAGGCTATGC
AGCTGAATGCCATACCGGCGCCCAAAGAGTTTGACTTAAATGCCATACCT
AAGCCACAAATAAATCTGGAGGCTATCCAGATGCCCAGCATCGGTGGTCA
TTCGACGGAGCAGCTTGGCCTCCTGCCGGACCGCATGTCCATGCCAGTGA
ATCCACACCCACCGCCTCCGCCGCCACCTGTAGTGGAGGAAATGGAGCAA
CAGCGCCAGCAGGTGGCACCTCCACATCCACCTCAGCCCACAGCTGCGCC
GCCACAAGGTTTCTTTATGATAAGAGCTGCGAGCAGTATCGAAGCTATAG
CGACCAACTCCTCGACTACAAACAGCAGCGGGCTGAGCGACAACGGGAGC
GGGAGCATCAGAAGCTAAGCCGGGACCATCAGCCGCAGGCGACGGAGCAG
ACGGACGCACAGCAACACCGCGAGGAGCAGCACAGCAACTCGGCGGCTGA
CAAGTACGACCCAGAGTCGGCCATCAGCGCGGACTTCGACTCGGATGACG
AGTACATGCGGGGCATGATGGATCGCAACCGGGACAACATCAAGCGCCGC
ATTGAGTGTCGCAACGAGCTGAGCGACGAGGAGAGGCGCGAACGGGAGGA
GGCTGCATCCGGAGAACCGCCGGATGGCGATGACCAGGACGACCAAGACG
ACAAGGAGTCGCAGAGGCAGCGTAGGAAGCGCGAGCGCAAGAGCCGATGG
GGCGAGAAAGAGCAACAGTTGCCATCCTCAAGCACTTCGGGAAACTTTGG
TAACCAAAATAAACCCATACTAAGTGGCATCACGCGAACAGATCCCGCGT
TGTTGCAGTATGCTCGGCTCAACTATGGATCGACTCAGCTGAGCGAGGAG
CAGTGGAAGCAGTGCGAGGAGCACTACAAAGTAAACCTGCTGTATCAGGA
CATGATGCGCAAGCGTCAGGAAATCGATCGACTGGCCCGTGGCGGTAAAT
TCAAGTACGAATACGACTCGGACGAGGACATTGAGGGCGGGACGTGGGAG
CACAAGTTGCGAACAGCCGAAATGGAGGCCACATCCCTATGGGCAAACGC
CCTGACCAAGCAAAGCGAAGGCAAGCATCACATCGGCGACTTTCTGCCCC
CCGAGGAGCTCAAGAAGTTCATGGAGCAGTACGAGGCGAAGAAGAACAAC
AGGCAGCCGGATCTAAGCGACTACAAGGAGTACAAACTAAAGGAGGACAA
CATTGGCTTCCAAATGCTGCAAAAACTCGGCTGGAAAGAGGGGCAGGGCT
TAGGACAGGACGGAGCTGGAATTGTGGACCCCGTTAACAAGGCACCGCAA
CGCGATGGAAACCAAGGACTTGGTGTCAGCAGCGCTGCCCAGCCAGAGGA
CTGCGACAATGAATATGACGCCTACAGGAAGCGAATGATGTTGGCCTATC
GTTTTCGTCCAAATCCTTTGAACAATCCACGTCGCGCCTACTACTAGCAC
TACCTAAAATGACCCCTACCCACATAACTACCAATATCCTAGGTCCACTT
ATTCAACTGCAACTTTGCTGAATAAAATGTCCTCGTTTAAATTAAAAAAA
AAAAAAAAAAAAA

AT04280.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-RC 2696 CG31550-RC 70..2656 10..2596 12920 99.9 Plus
CG31550.a 2823 CG31550.a 70..1372 10..1312 6485 99.8 Plus
CG31550-RB 2753 CG31550-RB 52..1350 10..1308 6480 99.9 Plus
CG31550.a 2823 CG31550.a 1495..2783 1308..2596 6445 100 Plus
CG31550-RB 2753 CG31550-RB 1468..2753 1308..2593 6430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1311892..1312545 657..1310 3255 99.8 Plus
chr3R 27901430 chr3R 1311191..1311839 10..658 3245 100 Plus
chr3R 27901430 chr3R 1314191..1314750 1782..2341 2800 100 Plus
chr3R 27901430 chr3R 1313492..1313967 1307..1782 2380 100 Plus
chr3R 27901430 chr3R 1314798..1314932 2336..2470 660 99.3 Plus
chr3R 27901430 chr3R 1315025..1315148 2470..2593 620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5486233..5486886 657..1310 3255 99.8 Plus
3R 32079331 3R 5485532..5486180 10..658 3245 100 Plus
3R 32079331 3R 5488532..5489091 1782..2341 2800 100 Plus
3R 32079331 3R 5487833..5488308 1307..1782 2380 100 Plus
3R 32079331 3R 5489139..5489273 2336..2470 660 99.3 Plus
3R 32079331 3R 5489366..5489492 2470..2596 635 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5227064..5227717 657..1310 3255 99.8 Plus
3R 31820162 3R 5226363..5227011 10..658 3245 100 Plus
3R 31820162 3R 5229363..5229922 1782..2341 2800 100 Plus
3R 31820162 3R 5228664..5229139 1307..1782 2380 100 Plus
3R 31820162 3R 5229970..5230104 2336..2470 660 99.2 Plus
3R 31820162 3R 5230197..5230323 2470..2596 635 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:43:40 has no hits.

AT04280.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:44:24 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1315026..1315148 2471..2593 100   Plus
chr3R 1311191..1311839 10..658 100 -> Plus
chr3R 1311894..1312543 659..1308 99 -> Plus
chr3R 1313494..1313966 1309..1781 100 -> Plus
chr3R 1314191..1314749 1782..2340 100 -> Plus
chr3R 1314803..1314932 2341..2470 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:51:48 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1..1302 117..1418 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:43:36 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1..1302 117..1418 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:32:36 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1..1302 117..1418 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:11:59 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1..1302 117..1418 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:41:30 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1..1302 117..1418 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:08:11 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1..2584 10..2593 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:36 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1..2584 10..2593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:32:36 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1..2573 21..2593 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:11:59 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1..2584 10..2593 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:41:30 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
CG31550-RC 1..2573 21..2593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:44:24 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5489367..5489489 2471..2593 100   Plus
3R 5485532..5486180 10..658 100 -> Plus
3R 5486235..5486884 659..1308 99 -> Plus
3R 5487835..5488307 1309..1781 100 -> Plus
3R 5488532..5489090 1782..2340 100 -> Plus
3R 5489144..5489273 2341..2470 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:44:24 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5489367..5489489 2471..2593 100   Plus
3R 5485532..5486180 10..658 100 -> Plus
3R 5486235..5486884 659..1308 99 -> Plus
3R 5487835..5488307 1309..1781 100 -> Plus
3R 5488532..5489090 1782..2340 100 -> Plus
3R 5489144..5489273 2341..2470 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:44:24 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5489367..5489489 2471..2593 100   Plus
3R 5485532..5486180 10..658 100 -> Plus
3R 5486235..5486884 659..1308 99 -> Plus
3R 5487835..5488307 1309..1781 100 -> Plus
3R 5488532..5489090 1782..2340 100 -> Plus
3R 5489144..5489273 2341..2470 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:32:36 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1315089..1315211 2471..2593 100   Plus
arm_3R 1311254..1311902 10..658 100 -> Plus
arm_3R 1311957..1312606 659..1308 99 -> Plus
arm_3R 1313557..1314029 1309..1781 100 -> Plus
arm_3R 1314254..1314812 1782..2340 100 -> Plus
arm_3R 1314866..1314995 2341..2470 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:29 Download gff for AT04280.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5226363..5227011 10..658 100 -> Plus
3R 5227066..5227715 659..1308 99 -> Plus
3R 5228666..5229138 1309..1781 100 -> Plus
3R 5229363..5229921 1782..2340 100 -> Plus
3R 5229975..5230104 2341..2470 100 -> Plus
3R 5230198..5230320 2471..2593 100   Plus

AT04280.hyp Sequence

Translation from 116 to 1417

> AT04280.hyp
MSQRNHRVDRFAQMTKQEEIIAKKRQEILEKQKTAQLAKAVAAAQNLAAQ
LKTETTVGKPIGNEVEYEEDARYLDTAVQDTSLAAGEDGLEAVHIEATAS
KGKTEDAVAPKTLNSFTGKTGKITFGMKRQQLPQPSVEQPPPKVKNTFCN
DGSFLENFKKILEKHEKPPQPLIVPPVPVPSAEENKAVDTETAEQNNSPQ
LEAAIAISSAAAMATSITVTSSAPTHLAFGLPVQAVQPPPPPPFAFNPTL
LQQGPPQMQLPAAFFHGHLPLHLHPAAVAPPPPPPPPQLPIALTNMGQIY
MQLGPSPVEAMQLNAIPAPKEFDLNAIPKPQINLEAIQMPSIGGHSTEQL
GLLPDRMSMPVNPHPPPPPPPVVEEMEQQRQQVAPPHPPQPTAAPPQGFF
MIRAASSIEAIATNSSTTNSSGLSDNGSGSIRS*

AT04280.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-PC 433 CG31550-PC 1..433 1..433 2244 100 Plus
CG31550-PD 835 CG31550-PD 1..399 1..399 2076 99.7 Plus
CG31550-PB 832 CG31550-PB 1..397 1..397 2073 100 Plus
dalao-PA 749 CG7055-PA 317..679 19..396 166 25.7 Plus

AT04280.pep Sequence

Translation from 116 to 1417

> AT04280.pep
MSQRNHRVDRFAQMTKQEEIIAKKRQEILEKQKTAQLAKAVAAAQNLAAQ
LKTETTVGKPIGNEVEYEEDARYLDTAVQDTSLAAGEDGLEAVHIEATAS
KGKTEDAVAPKTLNSFTGKTGKITFGMKRQQLPQPSVEQPPPKVKNTFCN
DGSFLENFKKILEKHEKPPQPLIVPPVPVPSAEENKAVDTETAEQNNSPQ
LEAAIAISSAAAMATSITVTSSAPTHLAFGLPVQAVQPPPPPPFAFNPTL
LQQGPPQMQLPAAFFHGHLPLHLHPAAVAPPPPPPPPQLPIALTNMGQIY
MQLGPSPVEAMQLNAIPAPKEFDLNAIPKPQINLEAIQMPSIGGHSTEQL
GLLPDRMSMPVNPHPPPPPPPVVEEMEQQRQQVAPPHPPQPTAAPPQGFF
MIRAASSIEAIATNSSTTNSSGLSDNGSGSIRS*

AT04280.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17256-PA 839 GF17256-PA 1..360 1..364 1018 74.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12860-PA 831 GG12860-PA 1..398 1..397 1436 91 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18599-PA 912 GH18599-PA 119..403 97..359 672 61.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31550-PC 433 CG31550-PC 1..433 1..433 2244 100 Plus
CG31550-PD 835 CG31550-PD 1..399 1..399 2076 99.7 Plus
CG31550-PE 440 CG31550-PE 1..399 1..399 2076 99.7 Plus
CG31550-PB 832 CG31550-PB 1..397 1..397 2073 100 Plus
Bap111-PA 749 CG7055-PA 317..679 19..396 166 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23081-PA 806 GI23081-PA 1..378 1..358 822 62.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21667-PA 871 GL21667-PA 1..373 1..364 958 65.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30091-PB 465 GA30091-PB 1..450 1..423 1027 62.5 Plus
Dpse\GA30091-PA 869 GA30091-PA 1..373 1..364 983 66.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10812-PA 834 GM10812-PA 1..386 1..384 1398 93 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19790-PA 834 GD19790-PA 1..386 1..384 1439 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22701-PA 870 GJ22701-PA 1..386 1..359 826 62.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13253-PA 854 GK13253-PA 1..414 1..393 750 57.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25473-PA 825 GE25473-PA 1..397 1..397 1391 86.5 Plus