Clone AT04454 Report

Search the DGRC for AT04454

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:44
Well:54
Vector:pOTB7
Associated Gene/TranscriptCG11710-RA
Protein status:AT04454.pep: gold
Preliminary Size:1542
Sequenced Size:1724

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11710 2002-01-01 Sim4 clustering to Release 2
CG11710 2002-01-09 Blastp of sequenced clone
CG11710 2003-01-01 Sim4 clustering to Release 3
CG11710 2008-04-29 Release 5.5 accounting
CG11710 2008-08-15 Release 5.9 accounting
CG11710 2008-12-18 5.12 accounting

Clone Sequence Records

AT04454.complete Sequence

1724 bp (1724 high quality bases) assembled on 2002-01-09

GenBank Submission: AY075162

> AT04454.complete
AAGCAGTTGGCAAACTTTGGGACTGCGAAATGGAGAATTTCCTGCGGGGC
ACGTTGTCCAAATGTCTGGACTGTGTAATCACGGATCAGATGTTGGCGGC
CATACTGAACATCAAAGACGACTATGAATTCGACAACTACTTTGGCAATT
TACTGAGCGAGGACAACGAGGAGCACCGCATGTTTCTTGTAAACTGTCGC
CGGATGCTACTGAGTGGCAAACAGCCGCGGAACAATGGAAAATATCTCTC
GCCCCCTCTGGCACCCACATCACCCAATTGTCCCAAGCAAAATATCAGCA
AGGGTGCCAAGGGCAAGTCAGGGAAACACGTGAATCTGTACGCCAGCGAT
GGTCGCGTCCAGGGCGACACCATAATTCTTAAGGGTCGGCGGCATTGCGA
TTGCCAGGCGGGCCAGCACAAGTTGATCAACAATTGCCTGGGCTGCGGCC
GGATCGTGTGCGAGCAGGAGGGAAGCGGCCCTTGCTTGAGCTGCGGCGAT
CCCGTGCGCACGCCCGAGGAGGAGCAGCAGCTGGCCAAGGCGGCCAGGGA
GAAGGGCGGCACGAAGAGCGCCGCCAAGCAGGGCAAAAAATCCACCAAGG
AACTGTCCACGCAGGCGCTGGACAAGGCCTTGGCCCAAAGGGATCGTCTG
CTGGAGTACGACAAGAACAGCGAGAAGAGGACCACAGTTATCGACGATGA
GCTGGACTACTTTCAGGAGAACTCCGTGTGGCTGAGCGACGCTGAGCGCG
AAAAGTTTGAGAAACTGCACCGAGAAATGGAGGAGGTAAAGCACGGCAGT
CGCATGAAGCGGAAGATCCGGGTGGACTTCGCTGGCCGAGAGTTGCCGGA
GGAACCGACCATCTCCAAAGAGTACGAGCAGCAGGTGATCAGCGAACTAG
CAGCCGTTTCTAAAGCCTCGGGTGTTGGATCCAACTGGAGTGCATCCTCG
GTCACCGGCCACTCCGCCTTGACACTGGCACCACATTTGAACATGACCAA
GCCGCCGGTCTACAAGCCCAGTAAGGAATCCAAGAGTTGGCCAGCTCCTG
CAGCAGGCAGCGATTGGCTGGAGAGGACCTACAATCGGGTGCAGGACAAG
GAGCTGCTGGAAATGCAGGACATGCGCCAGTGTCTGTCGATGCATCAGCC
CTGGGCTTCGCTTCTAGTGGCGGGCATTAAGAAACACGAGGGTCGAGTGT
GGTACAGCGAGCACCGTGGTAGACTGTGGATCGCCTCCACTTCCAAGGAG
CCGCACGCCGAAGACATTGCGCAAATGGAGGGCTTTTACAAGATCCCGAC
ATTAAGTTTCCAAGTCATTATCCCACAAGCAGTCTGCTAGGCTGCGTCCA
CGTGGACAGTTGTCTGCCGCAAGAGGAGTACCGAGAGCTATATCCCAACG
GAGAATCGGAGAGTCCTTATGTCTTTGTCTGCACCAAGCCGGAGCAGCTG
AATATTCTACTGCCCGTCCACGGCGATCACAAGATATACGAGCTGCCACT
GAAAACTCACACGGCCGCCTGCAAAACGCTTCTAAGGGCTCGGGCCAACA
AGGGTTAAGGTTGGGATTCAGTTTCAAAACACATTCTTATTAGTTTAATG
CCTGTATGAAAACAGCCCTATTTTGATGATTTGCTAATTTACATTTGAAG
CTCCTAGAGTTTCTGAGAAATTAAAGTGGATTGGAATATTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

AT04454.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-RA 1931 CG11710-RA 116..1810 1..1695 8475 100 Plus
CG11710-RB 1907 CG11710-RB 79..1370 1..1292 6460 100 Plus
CG11710-RB 1907 CG11710-RB 1383..1786 1292..1695 2020 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20294328..20294947 717..98 3100 100 Minus
chrX 22417052 chrX 20293743..20294215 1183..711 2350 99.8 Minus
chrX 22417052 chrX 20293045..20293249 1692..1488 1025 100 Minus
chrX 22417052 chrX 20293310..20293506 1487..1291 985 100 Minus
chrX 22417052 chrX 20293574..20293682 1292..1184 545 100 Minus
chrX 22417052 chrX 20295012..20295109 98..1 490 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:39:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20428818..20429437 717..98 3100 100 Minus
X 23542271 X 20428233..20428705 1183..711 2350 99.8 Minus
X 23542271 X 20427532..20427739 1695..1488 1040 100 Minus
X 23542271 X 20427800..20427996 1487..1291 985 100 Minus
X 23542271 X 20428064..20428172 1292..1184 545 100 Minus
X 23542271 X 20429502..20429599 98..1 490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20413910..20414529 717..98 3100 100 Minus
X 23527363 X 20413325..20413797 1183..711 2350 99.7 Minus
X 23527363 X 20412624..20412831 1695..1488 1040 100 Minus
X 23527363 X 20412892..20413088 1487..1291 985 100 Minus
X 23527363 X 20413156..20413264 1292..1184 545 100 Minus
X 23527363 X 20414594..20414691 98..1 490 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:02:27 has no hits.

AT04454.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:03:37 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20293045..20293249 1488..1692 100 <- Minus
chrX 20293310..20293504 1293..1487 100 <- Minus
chrX 20293574..20293682 1184..1292 100 <- Minus
chrX 20293743..20294209 717..1183 100 <- Minus
chrX 20294329..20294947 98..716 100 <- Minus
chrX 20295013..20295109 1..97 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:51:57 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 1..1311 30..1340 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:54:29 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 1..1311 30..1340 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:39:49 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RB 1..1542 30..1558 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:19:31 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 1..1311 30..1340 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:09 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RB 1..1542 30..1558 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:17:55 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 1..1692 1..1692 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:54:29 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 1..1692 1..1692 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:39:49 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 75..1766 1..1692 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:19:31 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 1..1692 1..1692 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:09 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
CG11710-RA 75..1766 1..1692 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:37 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
X 20427535..20427739 1488..1692 100 <- Minus
X 20427800..20427994 1293..1487 100 <- Minus
X 20428064..20428172 1184..1292 100 <- Minus
X 20428233..20428699 717..1183 100 <- Minus
X 20428819..20429437 98..716 100 <- Minus
X 20429503..20429599 1..97 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:37 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
X 20427535..20427739 1488..1692 100 <- Minus
X 20427800..20427994 1293..1487 100 <- Minus
X 20428064..20428172 1184..1292 100 <- Minus
X 20428233..20428699 717..1183 100 <- Minus
X 20428819..20429437 98..716 100 <- Minus
X 20429503..20429599 1..97 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:37 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
X 20427535..20427739 1488..1692 100 <- Minus
X 20427800..20427994 1293..1487 100 <- Minus
X 20428064..20428172 1184..1292 100 <- Minus
X 20428233..20428699 717..1183 100 <- Minus
X 20428819..20429437 98..716 100 <- Minus
X 20429503..20429599 1..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:39:49 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20298827..20299021 1293..1487 100 <- Minus
arm_X 20299091..20299199 1184..1292 100 <- Minus
arm_X 20298562..20298766 1488..1692 100 <- Minus
arm_X 20299260..20299726 717..1183 100 <- Minus
arm_X 20299846..20300464 98..716 100 <- Minus
arm_X 20300530..20300626 1..97 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:53:52 Download gff for AT04454.complete
Subject Subject Range Query Range Percent Splice Strand
X 20413325..20413791 717..1183 100 <- Minus
X 20413911..20414529 98..716 100 <- Minus
X 20414595..20414691 1..97 100   Minus
X 20412627..20412831 1488..1692 100 <- Minus
X 20412892..20413086 1293..1487 100 <- Minus
X 20413156..20413264 1184..1292 100 <- Minus

AT04454.hyp Sequence

Translation from 2 to 1339

> AT04454.hyp
AVGKLWDCEMENFLRGTLSKCLDCVITDQMLAAILNIKDDYEFDNYFGNL
LSEDNEEHRMFLVNCRRMLLSGKQPRNNGKYLSPPLAPTSPNCPKQNISK
GAKGKSGKHVNLYASDGRVQGDTIILKGRRHCDCQAGQHKLINNCLGCGR
IVCEQEGSGPCLSCGDPVRTPEEEQQLAKAAREKGGTKSAAKQGKKSTKE
LSTQALDKALAQRDRLLEYDKNSEKRTTVIDDELDYFQENSVWLSDAERE
KFEKLHREMEEVKHGSRMKRKIRVDFAGRELPEEPTISKEYEQQVISELA
AVSKASGVGSNWSASSVTGHSALTLAPHLNMTKPPVYKPSKESKSWPAPA
AGSDWLERTYNRVQDKELLEMQDMRQCLSMHQPWASLLVAGIKKHEGRVW
YSEHRGRLWIASTSKEPHAEDIAQMEGFYKIPTLSFQVIIPQAVC*

AT04454.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-PA 436 CG11710-PA 1..436 10..445 2308 100 Plus
CG11710-PC 513 CG11710-PC 1..422 10..431 2235 99.8 Plus
CG11710-PB 513 CG11710-PB 1..422 10..431 2235 99.8 Plus

AT04454.pep Sequence

Translation from 29 to 1339

> AT04454.pep
MENFLRGTLSKCLDCVITDQMLAAILNIKDDYEFDNYFGNLLSEDNEEHR
MFLVNCRRMLLSGKQPRNNGKYLSPPLAPTSPNCPKQNISKGAKGKSGKH
VNLYASDGRVQGDTIILKGRRHCDCQAGQHKLINNCLGCGRIVCEQEGSG
PCLSCGDPVRTPEEEQQLAKAAREKGGTKSAAKQGKKSTKELSTQALDKA
LAQRDRLLEYDKNSEKRTTVIDDELDYFQENSVWLSDAEREKFEKLHREM
EEVKHGSRMKRKIRVDFAGRELPEEPTISKEYEQQVISELAAVSKASGVG
SNWSASSVTGHSALTLAPHLNMTKPPVYKPSKESKSWPAPAAGSDWLERT
YNRVQDKELLEMQDMRQCLSMHQPWASLLVAGIKKHEGRVWYSEHRGRLW
IASTSKEPHAEDIAQMEGFYKIPTLSFQVIIPQAVC*

AT04454.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22312-PA 514 GF22312-PA 1..439 1..434 1836 77.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17582-PA 520 GG17582-PA 1..445 1..434 2016 85.8 Plus
Dere\GG17583-PA 967 GG17583-PA 1..129 1..126 523 76.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17728-PA 510 GH17728-PA 1..418 1..421 1407 64.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11710-PA 436 CG11710-PA 1..436 1..436 2308 100 Plus
CG11710-PC 513 CG11710-PC 1..422 1..422 2235 99.8 Plus
CG11710-PB 513 CG11710-PB 1..422 1..422 2235 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15476-PA 514 GI15476-PA 1..422 1..421 1519 68.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15791-PA 430 GL15791-PA 112..348 193..427 896 73.3 Plus
Dper\GL15791-PA 430 GL15791-PA 1..75 1..75 318 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11154-PA 532 GA11154-PA 1..450 1..427 1499 67.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22668-PA 513 GM22668-PA 1..438 1..434 2157 92 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24442-PA 508 GD24442-PA 1..424 1..424 2156 94.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19188-PA 513 GJ19188-PA 1..422 1..422 1573 70.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25493-PA 488 GK25493-PA 1..409 1..434 1265 61.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15346-PA 520 GE15346-PA 1..445 1..434 2025 86.7 Plus