Clone AT04489 Report

Search the DGRC for AT04489

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:44
Well:89
Vector:pOTB7
Associated Gene/Transcriptp-cup-RA
Protein status:AT04489.pep: gold
Preliminary Size:1617
Sequenced Size:1897

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12993 2002-01-01 Sim4 clustering to Release 2
CG12993 2002-01-09 Blastp of sequenced clone
CG12993 2003-01-01 Sim4 clustering to Release 3
CG12993 2008-04-29 Release 5.5 accounting
CG12993 2008-08-15 Release 5.9 accounting
CG12993 2008-12-18 5.12 accounting

Clone Sequence Records

AT04489.complete Sequence

1897 bp (1897 high quality bases) assembled on 2002-01-09

GenBank Submission: AY075163

> AT04489.complete
GTTCACTGGTTTCACTTAGTATCTTGCCAAATTCCAGTTGCGTTTGCATG
AAATTAGCCGTACAAAATTCAACATGTCATGGACGAGTGGCCTGTACAAG
TCCTTGCTCCTTCGGAGCCAGCAATCGCTTGTGCGTCCGGATCTCGCCCT
CCTGGACATCCAGATATCGAAGCGGGCCATTGAAACGATGTTCGGTCATC
GAAGGGAATTGAGTTTCAATCATTCACATACCGCCGACATCATTGCCAAG
AAGTGCGAAGAGCTTTTCAATGCCAACGAATTTGAGAACGCCCTAACCAC
GCTTTATACGGACGGACGTCCCTTTGGCGGACAATTTGCCCACGGGCGGT
TCGAGATGATCAAGCAAAGGAGCCTCGCTGTCTTCGAAGACACCTTGGGC
GAATCCCTGCGTCCCTTTATGCATCAGCACAGGGACGTCCTGGAGCAAAT
CAACCGACGCCAGAAGGAGCTGGCCGCCCATGTGTCCCGCCCACTTTGGA
AGAAGCTGCGCGACCAACAGCAGTGCGACGTCCAGAGTATCATTATCAAG
GAGCGGCCGCAGTTGACCTTACTAGAAAAGGCCCGCCGGCGGGCGAGTGA
GAGTCTGTACAACCACAACTACTTGGGCCGCAGCGCCGTCGATATCGCGC
TGCTGCGTCAACTGCGCAGCGACCGCAACTTCCTCGATCCCCTGAGGCTT
GCCACCACGCCCCCAATGCGCAAGCTGACCAGAAGGCAGTTCACGATTGT
GCGGCGGCTTATGAAAATGCTTCAAGCCCGAAATCCGTTGTACAACCGGC
GGTACGTGCAACAACGGCACGGTCCGATTGCAGACCAGGAGCGGCGTCGG
TGGCAGGAGATGCACCTGTTCCATGCGCAGTACCAGACGCGACGCGACTG
CATGCGGATGCTGCACGAGGTGCACAAGCGGCGCCGGGAGGGCGATGTGG
AGAAGCTGTCCGATTACGTGGAGAACATAATGTCGGGATTCATAGAGTAT
AAAACCCATCGCACGCTGCCCTGGAAGTTTGAGTTCATCAACGAAGTCTA
CAATATCCTGGCACTGGCCTATTGCGACAAGTGCGCGGTGCCAGCCAATG
TCGACTTCCTGCAGGCCCAGAATCGACCCATCTTATACCTACTGCGGACG
GAGAAGCTGCACGACATGAGCGTACAGTTCGGGGGTCCCAACATCTATGT
GGAGATCGAGAAGGAGGATGAGCGGCACAGCCGAATTAGCCAGAAGCTAG
AGCAACTGGAGAATCGGCTGCGTCACTCCCGCTTTGCGATCGAGCGATCC
TATTTGTTGTTTGAGATCGCGCGCTGTCACTTCCAGGAGTCGCGTTTCGA
CAAGTGCCTCGTGGTGGCCCGCAAGGCCTTTAACGAGGCCCGCAGTTGCA
ATTGTCTGATCTGGCGATTCAACAGCATCTTCCTGGGCTGCCAGGTGCAT
GCCGTGCTCAATCGCTTCGAGAGGCTAAAGGAATCGCTGGCGAAGGCGAG
TCAGTTGGCCAGCGAACTGCAGGCGCCCAAGCTGGTGGCCTATATAGCCA
TCTGCATCAACGTTAATAACTACGATCTGGCATTACAGCGGATCCGGCAG
TCGGATGGGAACAAGCGAAAGTCCCGGAAACGAAGTCCCGTCAGCACCAT
CACATCGAATAGCTCGCAGGGATCAATGAGTAGCACATAGTCTAGTTATT
TTATTTGCTCGACCAGTTGCTCTTAGCTCTACATTTCACTTCAACCTGAT
GGAATATAAAGCTAAGAGCAACAAGTTTAGAGTAATTTAGGCGCAAGTTT
TTTTTTATCATTCAATATGATGATACTCTTTTTTACGAATAAATGTTGAG
CAATGGTTTTAAGTCCAGTAACGATAAAAAAAAAAAAAAAAAAAAAA

AT04489.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
p-cup-RA 1920 p-cup-RA 38..1914 1..1877 9295 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17335709..17336199 1875..1385 2455 100 Minus
chrX 22417052 chrX 17336509..17336985 1239..763 2385 100 Minus
chrX 22417052 chrX 17337286..17337679 763..370 1970 100 Minus
chrX 22417052 chrX 17337764..17338133 370..1 1850 100 Minus
chrX 22417052 chrX 17336269..17336416 1385..1238 740 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:40:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17446348..17446840 1877..1385 2465 100 Minus
X 23542271 X 17447150..17447626 1239..763 2370 99.8 Minus
X 23542271 X 17447927..17448320 763..370 1925 99.2 Minus
X 23542271 X 17448405..17448774 370..1 1820 99.5 Minus
X 23542271 X 17446910..17447057 1385..1238 740 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17454446..17454938 1877..1385 2465 100 Minus
X 23527363 X 17455248..17455724 1239..763 2370 99.7 Minus
X 23527363 X 17456025..17456418 763..370 1925 99.2 Minus
X 23527363 X 17456503..17456872 370..1 1820 99.4 Minus
X 23527363 X 17455008..17455155 1385..1238 740 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:47:18 has no hits.

AT04489.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:48:21 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17335709..17336198 1386..1875 100 <- Minus
chrX 17336269..17336414 1240..1385 100 <- Minus
chrX 17336509..17336984 764..1239 100 <- Minus
chrX 17337286..17337678 371..763 100 <- Minus
chrX 17337764..17338133 1..370 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:52:03 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
CG12993-RA 1..1617 74..1690 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:54:33 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 1..1617 74..1690 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:13:13 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 1..1617 74..1690 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:19:34 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
CG12993-RA 1..1617 74..1690 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:38 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 1..1617 74..1690 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:17:59 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
CG12993-RA 1..1875 1..1875 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:54:33 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 1..1875 1..1875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:13 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 1..1875 1..1875 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:19:35 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
CG12993-RA 1..1875 1..1875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:38 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
p-cup-RA 1..1875 1..1875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:48:21 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
X 17446350..17446839 1386..1875 100 <- Minus
X 17446910..17447055 1240..1385 100 <- Minus
X 17447150..17447625 764..1239 99 <- Minus
X 17447927..17448319 371..763 99 <- Minus
X 17448405..17448774 1..370 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:48:21 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
X 17446350..17446839 1386..1875 100 <- Minus
X 17446910..17447055 1240..1385 100 <- Minus
X 17447150..17447625 764..1239 99 <- Minus
X 17447927..17448319 371..763 99 <- Minus
X 17448405..17448774 1..370 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:48:21 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
X 17446350..17446839 1386..1875 100 <- Minus
X 17446910..17447055 1240..1385 100 <- Minus
X 17447150..17447625 764..1239 99 <- Minus
X 17447927..17448319 371..763 99 <- Minus
X 17448405..17448774 1..370 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:13 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17341960..17342352 371..763 99 <- Minus
arm_X 17342438..17342807 1..370 99   Minus
arm_X 17340383..17340872 1386..1875 100 <- Minus
arm_X 17340943..17341088 1240..1385 100 <- Minus
arm_X 17341183..17341658 764..1239 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:53:56 Download gff for AT04489.complete
Subject Subject Range Query Range Percent Splice Strand
X 17454448..17454937 1386..1875 100 <- Minus
X 17455008..17455153 1240..1385 100 <- Minus
X 17455248..17455723 764..1239 99 <- Minus
X 17456025..17456417 371..763 99 <- Minus
X 17456503..17456872 1..370 99   Minus

AT04489.pep Sequence

Translation from 73 to 1689

> AT04489.pep
MSWTSGLYKSLLLRSQQSLVRPDLALLDIQISKRAIETMFGHRRELSFNH
SHTADIIAKKCEELFNANEFENALTTLYTDGRPFGGQFAHGRFEMIKQRS
LAVFEDTLGESLRPFMHQHRDVLEQINRRQKELAAHVSRPLWKKLRDQQQ
CDVQSIIIKERPQLTLLEKARRRASESLYNHNYLGRSAVDIALLRQLRSD
RNFLDPLRLATTPPMRKLTRRQFTIVRRLMKMLQARNPLYNRRYVQQRHG
PIADQERRRWQEMHLFHAQYQTRRDCMRMLHEVHKRRREGDVEKLSDYVE
NIMSGFIEYKTHRTLPWKFEFINEVYNILALAYCDKCAVPANVDFLQAQN
RPILYLLRTEKLHDMSVQFGGPNIYVEIEKEDERHSRISQKLEQLENRLR
HSRFAIERSYLLFEIARCHFQESRFDKCLVVARKAFNEARSCNCLIWRFN
SIFLGCQVHAVLNRFERLKESLAKASQLASELQAPKLVAYIAICINVNNY
DLALQRIRQSDGNKRKSRKRSPVSTITSNSSQGSMSST*

AT04489.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22339-PA 640 GF22339-PA 100..625 5..534 1449 51.2 Plus
Dana\GF13170-PA 591 GF13170-PA 110..575 61..533 693 34.3 Plus
Dana\GF23726-PA 587 GF23726-PA 68..569 10..521 656 31.4 Plus
Dana\GF21861-PA 590 GF21861-PA 68..578 9..534 605 31.4 Plus
Dana\GF17676-PA 561 GF17676-PA 114..510 61..511 525 31.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18182-PA 538 GG18182-PA 1..527 1..527 2446 85.2 Plus
Dere\GG16202-PA 579 GG16202-PA 88..567 35..519 643 31.2 Plus
Dere\GG20893-PA 580 GG20893-PA 110..544 61..501 634 33 Plus
Dere\GG17563-PA 594 GG17563-PA 101..576 54..531 619 33.7 Plus
Dere\GG14085-PA 580 GG14085-PA 117..560 61..518 568 32.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24905-PA 617 GH24905-PA 134..613 54..537 1067 43.8 Plus
Dgri\GH22763-PA 576 GH22763-PA 102..573 53..535 652 32.6 Plus
Dgri\GH22765-PA 581 GH22765-PA 110..570 61..533 642 33.7 Plus
Dgri\GH18307-PA 572 GH18307-PA 117..537 88..502 519 30.9 Plus
Dgri\GH17765-PA 382 GH17765-PA 62..366 226..536 357 30.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
p-cup-PA 538 CG12993-PA 1..538 1..538 2785 100 Plus
CG7634-PA 579 CG7634-PA 77..578 14..531 659 30.9 Plus
r-cup-PA 594 CG10998-PA 91..574 44..529 623 32.4 Plus
CG15128-PA 580 CG15128-PA 110..573 61..532 617 31.4 Plus
wa-cup-PB 580 CG10113-PB 117..560 61..518 573 32 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15966-PA 611 GI15966-PA 107..602 19..528 1076 45 Plus
Dmoj\GI11337-PA 569 GI11337-PA 86..567 35..517 623 31 Plus
Dmoj\GI18542-PA 573 GI18542-PA 110..572 61..535 598 32.2 Plus
Dmoj\GI15098-PA 577 GI15098-PA 106..560 61..515 567 31.6 Plus
Dmoj\GI18541-PA 465 GI18541-PA 43..433 61..496 510 29.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19892-PA 638 GL19892-PA 110..638 8..536 1447 54.1 Plus
Dper\GL24992-PA 587 GL24992-PA 102..581 52..531 663 32.7 Plus
Dper\GL14902-PA 594 GL14902-PA 104..587 54..530 659 33.3 Plus
Dper\GL22231-PA 577 GL22231-PA 101..565 53..524 637 32.4 Plus
Dper\GL11726-PA 579 GL11726-PA 109..570 61..534 608 31 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11961-PA 645 GA11961-PA 117..634 8..528 1452 53.7 Plus
Dpse\GA25385-PA 594 GA25385-PA 104..587 54..530 659 33.1 Plus
Dpse\GA27427-PA 577 GA27427-PA 102..566 54..525 654 32.8 Plus
Dpse\GA10698-PA 624 GA10698-PA 74..575 9..528 617 32.3 Plus
Dpse\GA13516-PA 579 GA13516-PA 109..570 61..534 610 31 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13314-PA 538 GM13314-PA 1..527 1..527 2608 91.8 Plus
Dsec\r-cup-PA 594 GM22647-PA 91..574 44..529 599 33.8 Plus
Dsec\GM19817-PA 454 GM19817-PA 8..419 88..501 587 32.5 Plus
Dsec\GM10962-PA 580 GM10962-PA 117..560 61..518 570 32.1 Plus
Dsec\GM22384-PA 503 GM22384-PA 183..503 212..532 464 33.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17357-PA 538 GD17357-PA 1..527 1..527 2592 91.1 Plus
Dsim\GD14973-PA 579 GD14973-PA 107..574 54..527 653 32.5 Plus
Dsim\GD25309-PA 579 GD25309-PA 110..544 61..501 617 32.1 Plus
Dsim\r-cup-PA 595 GD19350-PA 79..575 29..529 590 33.1 Plus
Dsim\GD19937-PA 580 GD19937-PA 117..560 61..518 573 32.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18857-PA 620 GJ18857-PA 111..610 18..531 1284 47.3 Plus
Dvir\GJ11593-PA 566 GJ11593-PA 111..544 61..498 679 33.9 Plus
Dvir\GJ21411-PA 583 GJ21411-PA 110..539 61..497 631 33 Plus
Dvir\GJ21410-PA 836 GJ21410-PA 379..836 61..529 626 31.6 Plus
Dvir\GJ10942-PA 562 GJ10942-PA 67..541 9..506 532 30.3 Plus
Dvir\GJ21410-PA 836 GJ21410-PA 100..338 61..306 261 29.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19955-PA 648 GK19955-PA 142..604 55..521 1285 53.5 Plus
Dwil\GK15695-PA 573 GK15695-PA 102..542 54..498 675 34.4 Plus
Dwil\GK20327-PA 580 GK20327-PA 74..578 14..531 662 31.5 Plus
Dwil\GK12012-PA 571 GK12012-PA 109..542 61..506 598 33.2 Plus
Dwil\GK20040-PA 430 GK20040-PA 270..398 387..515 231 39.5 Plus
Dwil\GK20040-PA 430 GK20040-PA 106..259 52..204 156 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15592-PA 538 GE15592-PA 1..527 1..527 2470 86 Plus
Dyak\GE19772-PA 579 GE19772-PA 107..579 54..532 644 32 Plus
Dyak\GE23266-PA 579 GE23266-PA 107..579 54..532 641 31.8 Plus
Dyak\GE13833-PA 580 GE13833-PA 110..544 61..501 633 33 Plus
Dyak\GE15324-PA 591 GE15324-PA 102..577 54..531 629 33.8 Plus

AT04489.hyp Sequence

Translation from 73 to 1689

> AT04489.hyp
MSWTSGLYKSLLLRSQQSLVRPDLALLDIQISKRAIETMFGHRRELSFNH
SHTADIIAKKCEELFNANEFENALTTLYTDGRPFGGQFAHGRFEMIKQRS
LAVFEDTLGESLRPFMHQHRDVLEQINRRQKELAAHVSRPLWKKLRDQQQ
CDVQSIIIKERPQLTLLEKARRRASESLYNHNYLGRSAVDIALLRQLRSD
RNFLDPLRLATTPPMRKLTRRQFTIVRRLMKMLQARNPLYNRRYVQQRHG
PIADQERRRWQEMHLFHAQYQTRRDCMRMLHEVHKRRREGDVEKLSDYVE
NIMSGFIEYKTHRTLPWKFEFINEVYNILALAYCDKCAVPANVDFLQAQN
RPILYLLRTEKLHDMSVQFGGPNIYVEIEKEDERHSRISQKLEQLENRLR
HSRFAIERSYLLFEIARCHFQESRFDKCLVVARKAFNEARSCNCLIWRFN
SIFLGCQVHAVLNRFERLKESLAKASQLASELQAPKLVAYIAICINVNNY
DLALQRIRQSDGNKRKSRKRSPVSTITSNSSQGSMSST*

AT04489.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
p-cup-PA 538 CG12993-PA 1..538 1..538 2785 100 Plus
CG7634-PA 579 CG7634-PA 77..578 14..531 659 30.9 Plus
r-cup-PA 594 CG10998-PA 91..574 44..529 623 32.4 Plus
CG15128-PA 580 CG15128-PA 110..573 61..532 617 31.4 Plus
wa-cup-PB 580 CG10113-PB 117..560 61..518 573 32 Plus