BDGP Sequence Production Resources |
Search the DGRC for AT04489
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 44 |
Well: | 89 |
Vector: | pOTB7 |
Associated Gene/Transcript | p-cup-RA |
Protein status: | AT04489.pep: gold |
Preliminary Size: | 1617 |
Sequenced Size: | 1897 |
Gene | Date | Evidence |
---|---|---|
CG12993 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12993 | 2002-01-09 | Blastp of sequenced clone |
CG12993 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12993 | 2008-04-29 | Release 5.5 accounting |
CG12993 | 2008-08-15 | Release 5.9 accounting |
CG12993 | 2008-12-18 | 5.12 accounting |
1897 bp (1897 high quality bases) assembled on 2002-01-09
GenBank Submission: AY075163
> AT04489.complete GTTCACTGGTTTCACTTAGTATCTTGCCAAATTCCAGTTGCGTTTGCATG AAATTAGCCGTACAAAATTCAACATGTCATGGACGAGTGGCCTGTACAAG TCCTTGCTCCTTCGGAGCCAGCAATCGCTTGTGCGTCCGGATCTCGCCCT CCTGGACATCCAGATATCGAAGCGGGCCATTGAAACGATGTTCGGTCATC GAAGGGAATTGAGTTTCAATCATTCACATACCGCCGACATCATTGCCAAG AAGTGCGAAGAGCTTTTCAATGCCAACGAATTTGAGAACGCCCTAACCAC GCTTTATACGGACGGACGTCCCTTTGGCGGACAATTTGCCCACGGGCGGT TCGAGATGATCAAGCAAAGGAGCCTCGCTGTCTTCGAAGACACCTTGGGC GAATCCCTGCGTCCCTTTATGCATCAGCACAGGGACGTCCTGGAGCAAAT CAACCGACGCCAGAAGGAGCTGGCCGCCCATGTGTCCCGCCCACTTTGGA AGAAGCTGCGCGACCAACAGCAGTGCGACGTCCAGAGTATCATTATCAAG GAGCGGCCGCAGTTGACCTTACTAGAAAAGGCCCGCCGGCGGGCGAGTGA GAGTCTGTACAACCACAACTACTTGGGCCGCAGCGCCGTCGATATCGCGC TGCTGCGTCAACTGCGCAGCGACCGCAACTTCCTCGATCCCCTGAGGCTT GCCACCACGCCCCCAATGCGCAAGCTGACCAGAAGGCAGTTCACGATTGT GCGGCGGCTTATGAAAATGCTTCAAGCCCGAAATCCGTTGTACAACCGGC GGTACGTGCAACAACGGCACGGTCCGATTGCAGACCAGGAGCGGCGTCGG TGGCAGGAGATGCACCTGTTCCATGCGCAGTACCAGACGCGACGCGACTG CATGCGGATGCTGCACGAGGTGCACAAGCGGCGCCGGGAGGGCGATGTGG AGAAGCTGTCCGATTACGTGGAGAACATAATGTCGGGATTCATAGAGTAT AAAACCCATCGCACGCTGCCCTGGAAGTTTGAGTTCATCAACGAAGTCTA CAATATCCTGGCACTGGCCTATTGCGACAAGTGCGCGGTGCCAGCCAATG TCGACTTCCTGCAGGCCCAGAATCGACCCATCTTATACCTACTGCGGACG GAGAAGCTGCACGACATGAGCGTACAGTTCGGGGGTCCCAACATCTATGT GGAGATCGAGAAGGAGGATGAGCGGCACAGCCGAATTAGCCAGAAGCTAG AGCAACTGGAGAATCGGCTGCGTCACTCCCGCTTTGCGATCGAGCGATCC TATTTGTTGTTTGAGATCGCGCGCTGTCACTTCCAGGAGTCGCGTTTCGA CAAGTGCCTCGTGGTGGCCCGCAAGGCCTTTAACGAGGCCCGCAGTTGCA ATTGTCTGATCTGGCGATTCAACAGCATCTTCCTGGGCTGCCAGGTGCAT GCCGTGCTCAATCGCTTCGAGAGGCTAAAGGAATCGCTGGCGAAGGCGAG TCAGTTGGCCAGCGAACTGCAGGCGCCCAAGCTGGTGGCCTATATAGCCA TCTGCATCAACGTTAATAACTACGATCTGGCATTACAGCGGATCCGGCAG TCGGATGGGAACAAGCGAAAGTCCCGGAAACGAAGTCCCGTCAGCACCAT CACATCGAATAGCTCGCAGGGATCAATGAGTAGCACATAGTCTAGTTATT TTATTTGCTCGACCAGTTGCTCTTAGCTCTACATTTCACTTCAACCTGAT GGAATATAAAGCTAAGAGCAACAAGTTTAGAGTAATTTAGGCGCAAGTTT TTTTTTATCATTCAATATGATGATACTCTTTTTTACGAATAAATGTTGAG CAATGGTTTTAAGTCCAGTAACGATAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
p-cup-RA | 1920 | p-cup-RA | 38..1914 | 1..1877 | 9295 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 17335709..17336199 | 1875..1385 | 2455 | 100 | Minus |
chrX | 22417052 | chrX | 17336509..17336985 | 1239..763 | 2385 | 100 | Minus |
chrX | 22417052 | chrX | 17337286..17337679 | 763..370 | 1970 | 100 | Minus |
chrX | 22417052 | chrX | 17337764..17338133 | 370..1 | 1850 | 100 | Minus |
chrX | 22417052 | chrX | 17336269..17336416 | 1385..1238 | 740 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 17446348..17446840 | 1877..1385 | 2465 | 100 | Minus |
X | 23542271 | X | 17447150..17447626 | 1239..763 | 2370 | 99.8 | Minus |
X | 23542271 | X | 17447927..17448320 | 763..370 | 1925 | 99.2 | Minus |
X | 23542271 | X | 17448405..17448774 | 370..1 | 1820 | 99.5 | Minus |
X | 23542271 | X | 17446910..17447057 | 1385..1238 | 740 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 17454446..17454938 | 1877..1385 | 2465 | 100 | Minus |
X | 23527363 | X | 17455248..17455724 | 1239..763 | 2370 | 99.7 | Minus |
X | 23527363 | X | 17456025..17456418 | 763..370 | 1925 | 99.2 | Minus |
X | 23527363 | X | 17456503..17456872 | 370..1 | 1820 | 99.4 | Minus |
X | 23527363 | X | 17455008..17455155 | 1385..1238 | 740 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 17335709..17336198 | 1386..1875 | 100 | <- | Minus |
chrX | 17336269..17336414 | 1240..1385 | 100 | <- | Minus |
chrX | 17336509..17336984 | 764..1239 | 100 | <- | Minus |
chrX | 17337286..17337678 | 371..763 | 100 | <- | Minus |
chrX | 17337764..17338133 | 1..370 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12993-RA | 1..1617 | 74..1690 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p-cup-RA | 1..1617 | 74..1690 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p-cup-RA | 1..1617 | 74..1690 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12993-RA | 1..1617 | 74..1690 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p-cup-RA | 1..1617 | 74..1690 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12993-RA | 1..1875 | 1..1875 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p-cup-RA | 1..1875 | 1..1875 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p-cup-RA | 1..1875 | 1..1875 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12993-RA | 1..1875 | 1..1875 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
p-cup-RA | 1..1875 | 1..1875 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17446350..17446839 | 1386..1875 | 100 | <- | Minus |
X | 17446910..17447055 | 1240..1385 | 100 | <- | Minus |
X | 17447150..17447625 | 764..1239 | 99 | <- | Minus |
X | 17447927..17448319 | 371..763 | 99 | <- | Minus |
X | 17448405..17448774 | 1..370 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17446350..17446839 | 1386..1875 | 100 | <- | Minus |
X | 17446910..17447055 | 1240..1385 | 100 | <- | Minus |
X | 17447150..17447625 | 764..1239 | 99 | <- | Minus |
X | 17447927..17448319 | 371..763 | 99 | <- | Minus |
X | 17448405..17448774 | 1..370 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17446350..17446839 | 1386..1875 | 100 | <- | Minus |
X | 17446910..17447055 | 1240..1385 | 100 | <- | Minus |
X | 17447150..17447625 | 764..1239 | 99 | <- | Minus |
X | 17447927..17448319 | 371..763 | 99 | <- | Minus |
X | 17448405..17448774 | 1..370 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 17341960..17342352 | 371..763 | 99 | <- | Minus |
arm_X | 17342438..17342807 | 1..370 | 99 | Minus | |
arm_X | 17340383..17340872 | 1386..1875 | 100 | <- | Minus |
arm_X | 17340943..17341088 | 1240..1385 | 100 | <- | Minus |
arm_X | 17341183..17341658 | 764..1239 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17454448..17454937 | 1386..1875 | 100 | <- | Minus |
X | 17455008..17455153 | 1240..1385 | 100 | <- | Minus |
X | 17455248..17455723 | 764..1239 | 99 | <- | Minus |
X | 17456025..17456417 | 371..763 | 99 | <- | Minus |
X | 17456503..17456872 | 1..370 | 99 | Minus |
Translation from 73 to 1689
> AT04489.pep MSWTSGLYKSLLLRSQQSLVRPDLALLDIQISKRAIETMFGHRRELSFNH SHTADIIAKKCEELFNANEFENALTTLYTDGRPFGGQFAHGRFEMIKQRS LAVFEDTLGESLRPFMHQHRDVLEQINRRQKELAAHVSRPLWKKLRDQQQ CDVQSIIIKERPQLTLLEKARRRASESLYNHNYLGRSAVDIALLRQLRSD RNFLDPLRLATTPPMRKLTRRQFTIVRRLMKMLQARNPLYNRRYVQQRHG PIADQERRRWQEMHLFHAQYQTRRDCMRMLHEVHKRRREGDVEKLSDYVE NIMSGFIEYKTHRTLPWKFEFINEVYNILALAYCDKCAVPANVDFLQAQN RPILYLLRTEKLHDMSVQFGGPNIYVEIEKEDERHSRISQKLEQLENRLR HSRFAIERSYLLFEIARCHFQESRFDKCLVVARKAFNEARSCNCLIWRFN SIFLGCQVHAVLNRFERLKESLAKASQLASELQAPKLVAYIAICINVNNY DLALQRIRQSDGNKRKSRKRSPVSTITSNSSQGSMSST*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22339-PA | 640 | GF22339-PA | 100..625 | 5..534 | 1449 | 51.2 | Plus |
Dana\GF13170-PA | 591 | GF13170-PA | 110..575 | 61..533 | 693 | 34.3 | Plus |
Dana\GF23726-PA | 587 | GF23726-PA | 68..569 | 10..521 | 656 | 31.4 | Plus |
Dana\GF21861-PA | 590 | GF21861-PA | 68..578 | 9..534 | 605 | 31.4 | Plus |
Dana\GF17676-PA | 561 | GF17676-PA | 114..510 | 61..511 | 525 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18182-PA | 538 | GG18182-PA | 1..527 | 1..527 | 2446 | 85.2 | Plus |
Dere\GG16202-PA | 579 | GG16202-PA | 88..567 | 35..519 | 643 | 31.2 | Plus |
Dere\GG20893-PA | 580 | GG20893-PA | 110..544 | 61..501 | 634 | 33 | Plus |
Dere\GG17563-PA | 594 | GG17563-PA | 101..576 | 54..531 | 619 | 33.7 | Plus |
Dere\GG14085-PA | 580 | GG14085-PA | 117..560 | 61..518 | 568 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24905-PA | 617 | GH24905-PA | 134..613 | 54..537 | 1067 | 43.8 | Plus |
Dgri\GH22763-PA | 576 | GH22763-PA | 102..573 | 53..535 | 652 | 32.6 | Plus |
Dgri\GH22765-PA | 581 | GH22765-PA | 110..570 | 61..533 | 642 | 33.7 | Plus |
Dgri\GH18307-PA | 572 | GH18307-PA | 117..537 | 88..502 | 519 | 30.9 | Plus |
Dgri\GH17765-PA | 382 | GH17765-PA | 62..366 | 226..536 | 357 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
p-cup-PA | 538 | CG12993-PA | 1..538 | 1..538 | 2785 | 100 | Plus |
CG7634-PA | 579 | CG7634-PA | 77..578 | 14..531 | 659 | 30.9 | Plus |
r-cup-PA | 594 | CG10998-PA | 91..574 | 44..529 | 623 | 32.4 | Plus |
CG15128-PA | 580 | CG15128-PA | 110..573 | 61..532 | 617 | 31.4 | Plus |
wa-cup-PB | 580 | CG10113-PB | 117..560 | 61..518 | 573 | 32 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15966-PA | 611 | GI15966-PA | 107..602 | 19..528 | 1076 | 45 | Plus |
Dmoj\GI11337-PA | 569 | GI11337-PA | 86..567 | 35..517 | 623 | 31 | Plus |
Dmoj\GI18542-PA | 573 | GI18542-PA | 110..572 | 61..535 | 598 | 32.2 | Plus |
Dmoj\GI15098-PA | 577 | GI15098-PA | 106..560 | 61..515 | 567 | 31.6 | Plus |
Dmoj\GI18541-PA | 465 | GI18541-PA | 43..433 | 61..496 | 510 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19892-PA | 638 | GL19892-PA | 110..638 | 8..536 | 1447 | 54.1 | Plus |
Dper\GL24992-PA | 587 | GL24992-PA | 102..581 | 52..531 | 663 | 32.7 | Plus |
Dper\GL14902-PA | 594 | GL14902-PA | 104..587 | 54..530 | 659 | 33.3 | Plus |
Dper\GL22231-PA | 577 | GL22231-PA | 101..565 | 53..524 | 637 | 32.4 | Plus |
Dper\GL11726-PA | 579 | GL11726-PA | 109..570 | 61..534 | 608 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11961-PA | 645 | GA11961-PA | 117..634 | 8..528 | 1452 | 53.7 | Plus |
Dpse\GA25385-PA | 594 | GA25385-PA | 104..587 | 54..530 | 659 | 33.1 | Plus |
Dpse\GA27427-PA | 577 | GA27427-PA | 102..566 | 54..525 | 654 | 32.8 | Plus |
Dpse\GA10698-PA | 624 | GA10698-PA | 74..575 | 9..528 | 617 | 32.3 | Plus |
Dpse\GA13516-PA | 579 | GA13516-PA | 109..570 | 61..534 | 610 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13314-PA | 538 | GM13314-PA | 1..527 | 1..527 | 2608 | 91.8 | Plus |
Dsec\r-cup-PA | 594 | GM22647-PA | 91..574 | 44..529 | 599 | 33.8 | Plus |
Dsec\GM19817-PA | 454 | GM19817-PA | 8..419 | 88..501 | 587 | 32.5 | Plus |
Dsec\GM10962-PA | 580 | GM10962-PA | 117..560 | 61..518 | 570 | 32.1 | Plus |
Dsec\GM22384-PA | 503 | GM22384-PA | 183..503 | 212..532 | 464 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17357-PA | 538 | GD17357-PA | 1..527 | 1..527 | 2592 | 91.1 | Plus |
Dsim\GD14973-PA | 579 | GD14973-PA | 107..574 | 54..527 | 653 | 32.5 | Plus |
Dsim\GD25309-PA | 579 | GD25309-PA | 110..544 | 61..501 | 617 | 32.1 | Plus |
Dsim\r-cup-PA | 595 | GD19350-PA | 79..575 | 29..529 | 590 | 33.1 | Plus |
Dsim\GD19937-PA | 580 | GD19937-PA | 117..560 | 61..518 | 573 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18857-PA | 620 | GJ18857-PA | 111..610 | 18..531 | 1284 | 47.3 | Plus |
Dvir\GJ11593-PA | 566 | GJ11593-PA | 111..544 | 61..498 | 679 | 33.9 | Plus |
Dvir\GJ21411-PA | 583 | GJ21411-PA | 110..539 | 61..497 | 631 | 33 | Plus |
Dvir\GJ21410-PA | 836 | GJ21410-PA | 379..836 | 61..529 | 626 | 31.6 | Plus |
Dvir\GJ10942-PA | 562 | GJ10942-PA | 67..541 | 9..506 | 532 | 30.3 | Plus |
Dvir\GJ21410-PA | 836 | GJ21410-PA | 100..338 | 61..306 | 261 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19955-PA | 648 | GK19955-PA | 142..604 | 55..521 | 1285 | 53.5 | Plus |
Dwil\GK15695-PA | 573 | GK15695-PA | 102..542 | 54..498 | 675 | 34.4 | Plus |
Dwil\GK20327-PA | 580 | GK20327-PA | 74..578 | 14..531 | 662 | 31.5 | Plus |
Dwil\GK12012-PA | 571 | GK12012-PA | 109..542 | 61..506 | 598 | 33.2 | Plus |
Dwil\GK20040-PA | 430 | GK20040-PA | 270..398 | 387..515 | 231 | 39.5 | Plus |
Dwil\GK20040-PA | 430 | GK20040-PA | 106..259 | 52..204 | 156 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15592-PA | 538 | GE15592-PA | 1..527 | 1..527 | 2470 | 86 | Plus |
Dyak\GE19772-PA | 579 | GE19772-PA | 107..579 | 54..532 | 644 | 32 | Plus |
Dyak\GE23266-PA | 579 | GE23266-PA | 107..579 | 54..532 | 641 | 31.8 | Plus |
Dyak\GE13833-PA | 580 | GE13833-PA | 110..544 | 61..501 | 633 | 33 | Plus |
Dyak\GE15324-PA | 591 | GE15324-PA | 102..577 | 54..531 | 629 | 33.8 | Plus |
Translation from 73 to 1689
> AT04489.hyp MSWTSGLYKSLLLRSQQSLVRPDLALLDIQISKRAIETMFGHRRELSFNH SHTADIIAKKCEELFNANEFENALTTLYTDGRPFGGQFAHGRFEMIKQRS LAVFEDTLGESLRPFMHQHRDVLEQINRRQKELAAHVSRPLWKKLRDQQQ CDVQSIIIKERPQLTLLEKARRRASESLYNHNYLGRSAVDIALLRQLRSD RNFLDPLRLATTPPMRKLTRRQFTIVRRLMKMLQARNPLYNRRYVQQRHG PIADQERRRWQEMHLFHAQYQTRRDCMRMLHEVHKRRREGDVEKLSDYVE NIMSGFIEYKTHRTLPWKFEFINEVYNILALAYCDKCAVPANVDFLQAQN RPILYLLRTEKLHDMSVQFGGPNIYVEIEKEDERHSRISQKLEQLENRLR HSRFAIERSYLLFEIARCHFQESRFDKCLVVARKAFNEARSCNCLIWRFN SIFLGCQVHAVLNRFERLKESLAKASQLASELQAPKLVAYIAICINVNNY DLALQRIRQSDGNKRKSRKRSPVSTITSNSSQGSMSST*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
p-cup-PA | 538 | CG12993-PA | 1..538 | 1..538 | 2785 | 100 | Plus |
CG7634-PA | 579 | CG7634-PA | 77..578 | 14..531 | 659 | 30.9 | Plus |
r-cup-PA | 594 | CG10998-PA | 91..574 | 44..529 | 623 | 32.4 | Plus |
CG15128-PA | 580 | CG15128-PA | 110..573 | 61..532 | 617 | 31.4 | Plus |
wa-cup-PB | 580 | CG10113-PB | 117..560 | 61..518 | 573 | 32 | Plus |