Clone AT04676 Report

Search the DGRC for AT04676

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:46
Well:76
Vector:pOTB7
Associated Gene/TranscriptCG1640-RB
Protein status:AT04676.pep: gold
Sequenced Size:1998

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1640 2008-04-29 Release 5.5 accounting
CG1640 2008-04-29 Picked prior to 5.5
CG1640 2008-08-15 Release 5.9 accounting
CG1640 2008-12-18 5.12 accounting

Clone Sequence Records

AT04676.complete Sequence

1998 bp assembled on 2007-11-15

GenBank Submission: BT031172

> AT04676.complete
ATTTTCGGGCCAGGATTGAATCGACACAAAACTAATTCAATGGGACACTC
CTATAACAATCAATTTCAGTGATATATGAAGATGCGCACAAAGCCAGCAA
AATTGTTTAAGTGAATTTAAAGTTTTACACGAAAAACAAGCAAAGAGCAA
AGATGTTTAAAAACAGAAAAATAATGAGTCGAATGCTAATTAAACCTGCT
GCCGCCACAGTTTCGGCCGCTTTGCAGCAGCACCAGCGCCAGCAGCAACA
GTACGTTATTCGCCGCTGGAAATCGTTCCTGCACAACAACAGCAACAATG
CCAATCGACGTGCGGCGAAATCAACGGCAACAGCAACGGTGACGGCGGCA
GCGACGTCGCAGCGCCATGGAACAAGCGGCGATTTCATTCAACCGTTAGA
CGTCCGCCGTTCCTTTTCAACCAGCCACAAAATGCCGTCGTCGTCGAAAG
CGCTCACACTGGATAACATAAATCCCAACTTTATTGCCATGGAATATGCC
GTTCGCGGTCCTCTGGTGATTCGTGCTGGGGAAATCGAGAAGGAACTGGA
AAAGGGTGTCAAGAAGCCATTCGACCAGGTGATCCGTGCCAACATCGGTG
ATTGCCATGCGATGGGCCAGCAGCCCTTGACCTTCCTGCGACAGCTGTTG
GCGCTGACCTTCGAGACACGTCTGCTGGATTCACCCGATTATCCCGAGGA
CGTCAAGAAGCGCGCCTGTGCCATTTTGAACGGCTGCCAGGGTCAATCGG
TGGGCTCGTACACCGACTCCGCCGGTCTGGAGGTGGTGCGTCGCCAGGTT
GCTCAGTACATCGAGAAAAGGGATGGCGGCATCGCCTCCAATTGGCAGGA
CATCTATCTAACCGGCGGTGCCTCTCCCGGCATCAAGAGCATTCTCTCCA
TGATCAACGCCGAGGTGGGATGCAAGGCGCCTGGTGTCATGGTGCCCATT
CCGCAGTACCCACTGTACTCGGCCACCATCTCTGAATATGGCATGACCAA
GGTGGATTACTATCTGGAGGAGGAGACCGGCTGGAGCCTGGACAGGAAGG
AGCTGCAACGGTCCTACGATGAGGCCAAGAAGGTCTGCAATCCGCGTGCC
CTGGTCGTGATCAATCCGGGCAATCCCACCGGACAGGTACTGACCCGCGA
GAACATCGAGGAGATCATTAAGTTCGCACACGATAACAAGGTGCTGGTGC
TGGCCGATGAGGTGTACCAGGACAATGTCTACGACAAGAACTCCAAGTTC
TGGTCGTTCAAGAAGGTGGCCTACGAAATGGGCGACCCCTATCGTAATCT
GGAAATGGTCAGTTTCCTGTCCACCTCGAAGGGCTATCTGGGCGAGTGCG
GCATTCGCGGCGGTTACATGGAGGTTCTCAATCTTGATCCCAAGGTCAAG
GCCATGCTGACCAAGTCGATAACGGCGGCGCTTTGCAGCACCACCGCTGG
CCAGGTGGCCGTGAGTGCCCTGGTCAATCCACCGCAGCCCGGAGAGCCAT
CATACGATCTGTACAAGAAGGAGCGCGATGGCATTCTGGCCGCTCTAAAA
GAACGGGCCGAGCTCGTCCACAAGGCACTGAACAGCTTCGAAGGCTACAA
GGTTAACCCCGTACAGGGCGCCATGTACGTCTTTCCACAGATCGAGATCC
CGCCCAAGGCGATCGAGGCGGCCAAGGCCAAGGGCATGGCCCCCGATGTT
TTCTACGCATTTGAGCTGCTCGAGACGAGCGGCATTTGCATTGTTCCTGG
CAGTGGATTTGGTCAGAAGCCCGGTACGTGGCATTTCCGAAGCACGATCC
TCCCGCAAACGGACAAGCTGAAGCTGATGATGGAGAAGTTCCGCGTGTTC
CACGCCGAGTTCATGAAGAAGTACAAGTAGATCAGCTGCCAACTTCCCCG
TCCTCGATCCCTGTGTTAAGTGTCAATCCTCCGGCTTAGGATTAAAAATT
TAAATTACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT04676.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1640-RB 2518 CG1640-RB 30..1992 1..1963 9665 99.4 Plus
CG1640-RC 2609 CG1640-RC 289..2083 169..1963 8855 99.5 Plus
CG1640-RA 2682 CG1640-RA 395..2189 169..1963 8855 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13269326..13270154 904..1732 4085 99.5 Plus
chrX 22417052 chrX 13268793..13269058 642..907 1315 99.6 Plus
chrX 22417052 chrX 13264668..13264908 169..409 1205 100 Plus
chrX 22417052 chrX 13270215..13270445 1731..1961 1155 100 Plus
chrX 22417052 chrX 13261449..13261616 1..168 810 98.8 Plus
chrX 22417052 chrX 13265050..13265196 409..555 735 100 Plus
chrX 22417052 chrX 13268639..13268730 553..644 460 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:40:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13378543..13379371 904..1732 4070 99.4 Plus
X 23542271 X 13378010..13378275 642..907 1330 100 Plus
X 23542271 X 13373863..13374103 169..409 1175 99.2 Plus
X 23542271 X 13379432..13379664 1731..1963 1135 99.1 Plus
X 23542271 X 13370635..13370802 1..168 810 98.8 Plus
X 23542271 X 13374240..13374386 409..555 735 100 Plus
X 23542271 X 13377856..13377947 553..644 460 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13386641..13387469 904..1732 4070 99.3 Plus
X 23527363 X 13386108..13386373 642..907 1330 100 Plus
X 23527363 X 13381961..13382201 169..409 1175 99.1 Plus
X 23527363 X 13387530..13387762 1731..1963 1135 99.1 Plus
X 23527363 X 13378733..13378900 1..168 810 98.8 Plus
X 23527363 X 13382338..13382484 409..555 735 100 Plus
X 23527363 X 13385954..13386045 553..644 460 100 Plus
Blast to na_te.dros performed 2019-03-16 22:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6964 192..404 174 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2445 225..355 154 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6858 225..367 152 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6860 224..337 140 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2469 224..355 139 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6878 192..337 123 58.9 Plus
roo 9092 roo DM_ROO 9092bp 1079..1171 225..324 113 63 Plus

AT04676.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:08:45 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13261449..13261616 1..168 98 -> Plus
chrX 13264668..13264908 169..409 100 -> Plus
chrX 13265051..13265195 410..554 100 -> Plus
chrX 13268641..13268730 555..644 100 -> Plus
chrX 13268796..13269058 645..907 99 -> Plus
chrX 13269330..13270153 908..1731 99 -> Plus
chrX 13270216..13270445 1732..1961 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:52:26 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG1640-RB 1..1728 153..1880 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:00:50 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG1640-RB 1..1728 153..1880 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:09:04 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG1640-RB 1..1728 153..1880 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:17 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG1640-RB 1..1728 153..1880 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:15 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG1640-RB 1..1728 153..1880 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:43:01 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG1640-RB 30..1990 1..1961 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:00:50 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG1640-RB 30..1990 1..1961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:04 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG1640-RB 30..1990 1..1961 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:17 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG1640-RB 30..1990 1..1961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:15 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
CG1640-RB 30..1990 1..1961 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:45 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
X 13370635..13370802 1..168 98 -> Plus
X 13373863..13374103 169..409 99 -> Plus
X 13374241..13374385 410..554 100 -> Plus
X 13377858..13377947 555..644 100 -> Plus
X 13378013..13378275 645..907 100 -> Plus
X 13378547..13379370 908..1731 99 -> Plus
X 13379433..13379662 1732..1961 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:45 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
X 13370635..13370802 1..168 98 -> Plus
X 13373863..13374103 169..409 99 -> Plus
X 13374241..13374385 410..554 100 -> Plus
X 13377858..13377947 555..644 100 -> Plus
X 13378013..13378275 645..907 100 -> Plus
X 13378547..13379370 908..1731 99 -> Plus
X 13379433..13379662 1732..1961 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:08:45 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
X 13370635..13370802 1..168 98 -> Plus
X 13373863..13374103 169..409 99 -> Plus
X 13374241..13374385 410..554 100 -> Plus
X 13377858..13377947 555..644 100 -> Plus
X 13378013..13378275 645..907 100 -> Plus
X 13378547..13379370 908..1731 99 -> Plus
X 13379433..13379662 1732..1961 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:04 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13264668..13264835 1..168 98 -> Plus
arm_X 13267896..13268136 169..409 99 -> Plus
arm_X 13268274..13268418 410..554 100 -> Plus
arm_X 13271891..13271980 555..644 100 -> Plus
arm_X 13272046..13272308 645..907 100 -> Plus
arm_X 13272580..13273403 908..1731 99 -> Plus
arm_X 13273466..13273695 1732..1961 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:52:44 Download gff for AT04676.complete
Subject Subject Range Query Range Percent Splice Strand
X 13382339..13382483 410..554 100 -> Plus
X 13385956..13386045 555..644 100 -> Plus
X 13381961..13382201 169..409 99 -> Plus
X 13386111..13386373 645..907 100 -> Plus
X 13386645..13387468 908..1731 99 -> Plus
X 13387531..13387760 1732..1961 99   Plus
X 13378733..13378900 1..168 98 -> Plus

AT04676.pep Sequence

Translation from 152 to 1879

> AT04676.pep
MFKNRKIMSRMLIKPAAATVSAALQQHQRQQQQYVIRRWKSFLHNNSNNA
NRRAAKSTATATVTAAATSQRHGTSGDFIQPLDVRRSFSTSHKMPSSSKA
LTLDNINPNFIAMEYAVRGPLVIRAGEIEKELEKGVKKPFDQVIRANIGD
CHAMGQQPLTFLRQLLALTFETRLLDSPDYPEDVKKRACAILNGCQGQSV
GSYTDSAGLEVVRRQVAQYIEKRDGGIASNWQDIYLTGGASPGIKSILSM
INAEVGCKAPGVMVPIPQYPLYSATISEYGMTKVDYYLEEETGWSLDRKE
LQRSYDEAKKVCNPRALVVINPGNPTGQVLTRENIEEIIKFAHDNKVLVL
ADEVYQDNVYDKNSKFWSFKKVAYEMGDPYRNLEMVSFLSTSKGYLGECG
IRGGYMEVLNLDPKVKAMLTKSITAALCSTTAGQVAVSALVNPPQPGEPS
YDLYKKERDGILAALKERAELVHKALNSFEGYKVNPVQGAMYVFPQIEIP
PKAIEAAKAKGMAPDVFYAFELLETSGICIVPGSGFGQKPGTWHFRSTIL
PQTDKLKLMMEKFRVFHAEFMKKYK*

AT04676.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19406-PA 244 GF19406-PA 1..243 8..251 892 75.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17777-PA 574 GG17777-PA 1..574 1..575 2791 95.5 Plus
Dere\GG17840-PA 508 GG17840-PA 141..460 190..541 213 27.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24493-PA 595 GH24493-PA 26..595 11..575 2058 69.9 Plus
Dgri\GH12929-PA 483 GH12929-PA 116..460 190..572 195 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1640-PB 575 CG1640-PB 1..575 1..575 2977 100 Plus
CG1640-PG 568 CG1640-PG 1..568 8..575 2941 100 Plus
CG1640-PF 568 CG1640-PF 1..568 8..575 2941 100 Plus
CG1640-PA 568 CG1640-PA 1..568 8..575 2941 100 Plus
CG1640-PE 568 CG1640-PE 1..568 8..575 2941 100 Plus
CG1640-PD 568 CG1640-PD 1..568 8..575 2941 100 Plus
CG1640-PC 568 CG1640-PC 1..568 8..575 2941 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15248-PA 587 GI15248-PA 37..587 24..575 2025 68.6 Plus
Dmoj\GI15439-PA 479 GI15439-PA 112..427 190..536 193 26.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18066-PA 248 GL18066-PA 1..204 281..554 690 54.4 Plus
Dper\GL16219-PA 149 GL16219-PA 29..135 35..134 241 55 Plus
Dper\GL14927-PA 501 GL14927-PA 132..478 190..574 198 26.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22670-PA 576 GA22670-PA 29..576 35..575 2376 81.5 Plus
Dpse\GA26121-PA 126 GA26121-PA 14..126 284..404 460 69.4 Plus
Dpse\GA13109-PA 497 GA13109-PA 128..474 190..574 199 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11628-PA 568 GM11628-PA 1..568 1..575 2977 96.3 Plus
Dsec\GM17670-PA 503 GM17670-PA 136..455 190..541 195 26.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17120-PA 575 GD17120-PA 1..575 1..575 3054 97.9 Plus
Dsim\GD11952-PA 266 GD11952-PA 1..266 94..359 1393 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14820-PA 588 GJ14820-PA 37..588 21..575 2144 71.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17070-PA 576 GK17070-PA 1..576 8..575 2346 76.5 Plus
Dwil\GK20156-PA 513 GK20156-PA 140..455 190..536 184 26.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17071-PA 575 GE17071-PA 1..575 1..575 2800 95.1 Plus
Dyak\GE17134-PA 500 GE17134-PA 133..452 190..541 194 26.5 Plus

AT04676.hyp Sequence

Translation from 152 to 1879

> AT04676.hyp
MFKNRKIMSRMLIKPAAATVSAALQQHQRQQQQYVIRRWKSFLHNNSNNA
NRRAAKSTATATVTAAATSQRHGTSGDFIQPLDVRRSFSTSHKMPSSSKA
LTLDNINPNFIAMEYAVRGPLVIRAGEIEKELEKGVKKPFDQVIRANIGD
CHAMGQQPLTFLRQLLALTFETRLLDSPDYPEDVKKRACAILNGCQGQSV
GSYTDSAGLEVVRRQVAQYIEKRDGGIASNWQDIYLTGGASPGIKSILSM
INAEVGCKAPGVMVPIPQYPLYSATISEYGMTKVDYYLEEETGWSLDRKE
LQRSYDEAKKVCNPRALVVINPGNPTGQVLTRENIEEIIKFAHDNKVLVL
ADEVYQDNVYDKNSKFWSFKKVAYEMGDPYRNLEMVSFLSTSKGYLGECG
IRGGYMEVLNLDPKVKAMLTKSITAALCSTTAGQVAVSALVNPPQPGEPS
YDLYKKERDGILAALKERAELVHKALNSFEGYKVNPVQGAMYVFPQIEIP
PKAIEAAKAKGMAPDVFYAFELLETSGICIVPGSGFGQKPGTWHFRSTIL
PQTDKLKLMMEKFRVFHAEFMKKYK*

AT04676.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1640-PB 575 CG1640-PB 1..575 1..575 2977 100 Plus
CG1640-PG 568 CG1640-PG 1..568 8..575 2941 100 Plus
CG1640-PF 568 CG1640-PF 1..568 8..575 2941 100 Plus
CG1640-PA 568 CG1640-PA 1..568 8..575 2941 100 Plus
CG1640-PE 568 CG1640-PE 1..568 8..575 2941 100 Plus