Clone AT04835 Report

Search the DGRC for AT04835

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:48
Well:35
Vector:pOTB7
Associated Gene/TranscriptHsp60D-RA
Protein status:AT04835.pep: gold
Preliminary Size:1677
Sequenced Size:1917

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16954 2002-01-01 Sim4 clustering to Release 2
CG16954 2002-02-22 Blastp of sequenced clone
CG16954 2003-01-01 Sim4 clustering to Release 3
Hsp60D 2008-04-29 Release 5.5 accounting
Hsp60D 2008-08-15 Release 5.9 accounting
Hsp60D 2008-12-18 5.12 accounting

Clone Sequence Records

AT04835.complete Sequence

1917 bp (1917 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089262

> AT04835.complete
ACCCTTCAAAATGACCGAACTTTTCCAGATTAACATTTTCTACACTTTAC
CGATTTCAAGCAACGTGAGTATCAAGGAATCAGGATGCTGAGCAGATTGG
GCCGGAGTGGTCGGGCCGGTGTGCGCACCTTTGCCAATGACATTCGCTTT
GGAGCCGAGGCGCGCTGCCTGCTTATGCAGGGCGTGAACGTCCTGGCCAA
CGCGGTGGCCACCACTCTGGGCCCGAAGGGCAGGAACGTGCTCATCGAAC
AGCTGCTGATCTCGCCCCGGATCACCAAGGATGGCATCACGGTGGCGAAT
AACGTGCAGCTGGGCAATCGTCGGCAGGATATGGGAGTTCAATTGCTGCG
CCAGGCCACCAATAATACCAATAATAAGGTAGGCGATGGCACCACCACGG
CCACTATTCTGGCCCGTGGAATAGCCTGCCAGGGTATGCATGTGTTGCGC
CAGAGCAAGGTGAACGTCCAACTCCTGCGGGAGGGCATTCTCGAGGGATC
GCGCGCTGTGTGCGATGCTCTAGGTGAGATGTCCCAGTCGGTGGATACTA
TTGGCCAAGTGGAAGCAGTGGCCAAGGTGGCACTGAATGGAGACGAACGG
CTGGCGGAGCTGATTGGTGACATCATTTTGGAGCTGGGCGATAGCGGCGT
CATCCTGCTGAAGGAATCCCACAGTCCCTTCGATGAGGCTAAGATCCAGG
AGGGTATAACCATCGCTTCGGGCTACTATTCGCCATTCTTTGCCAAGCAA
TCTCATACCCTGGAATTGGAGAATTGCTTGCTGCTGCTCACTTTGGCTAA
GATTGATCAAGTGGAACAGATACTTCCCGCTCTCGAGCTGGCCAGACTAA
AAGAACGACCCCTTCTGATCATTGCCAAAAATTTTGGTAGCGATTTGCTT
AAGATCTTAGTGCTAAATAATCTGCAAGGTCGAGTTCAGGTCTGTGCTGT
GAAGGCTCCAAGCTTTGGGGACGAGCAGTGCGAGGAAATGGAGGATATAG
CTTTTGCCACCGGTGGCCATCTTCTGGAGGATGCCTCCAGTCTGGCGGAT
CTCAGCGAGGAGGATCTGGGTGAGGTGATGGAGGCGGTGGTGGACGCTAA
GGAAACGCACCTATTGCAACCGATCAATGTGAACGAGGAGCAGGTGCAGT
GCCGCATCCAGGACATTCGTGAGCTGATCGATGAGGCTTTCACCGATGTG
GAACTGGATCGCCTGAAAACACGACTTGGTCGCTTGCAGGGCCACCTGGC
CACCATTTTCGTGGGCGGTACCAGTGAGCTGGAGGTGAGCGAGCGAAAGG
ATCGCTTCAACGATGCCCTTCACGCCGTTCGAGTGGCCATAAGTGATGGT
GTGGTTCCCGGAGGAGGAACCGCCTATCTACGATGTATTCCAGTTCTGGA
CGAGTTGCCGCCAACCGATATAATGGAGCTCCAGGTTGGCAGGGAGATTG
TAAAGGACGCTTTACGACTACCATGCTATACAATTGCCCGGAATGCTGGA
GTGGACCCCAACGAGGTACTACGTCGGGTTTTAAAGGGCAGTGGCAACTA
CGGATATGATGCCGCCGCTGGGGAATTCGGCGATCTTGTGGTCCGGGGAA
TTGTGGATCCCACAAAAGTGTTGCAATCAGCCATGACGTCTGCCGCAGGA
ATTGCCTCCCTTTTGGCCACCACCGAGGTGCTCATCACTAAACAACCCAC
CAAACCGAAGATTCCGAAAAATCAGGTCACCAAGGATCTTGCTAAACTTG
TTGGAATGTAGGTTAGGTAGTGCGTTTTGAAGAAACACAACATTTTATGT
AATGATAAAAAGACCTAAATTCTATGTTGAAAAACTAAATGGTTAATACA
AAGAAAAAATAAAATAATTCTGAGTTTCTTGTTTGCCATTGTCAAAAAAA
AAAAAAAAAAAAAAAAA

AT04835.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp60D-RA 1936 Hsp60D-RA 51..1936 8..1893 9415 99.9 Plus
Hsp60D-RB 1954 Hsp60D-RB 118..1954 57..1893 9185 100 Plus
Hsp60D-RB 1954 Hsp60D-RB 3..55 8..60 250 98.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13446214..13448050 1893..57 9185 100 Minus
chr2L 23010047 chr2L 13448113..13448165 60..8 265 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:40:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13447534..13449374 1897..57 9205 100 Minus
2L 23513712 2L 13449437..13449489 60..8 250 98.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13447534..13449374 1897..57 9205 100 Minus
2L 23513712 2L 13449437..13449489 60..8 250 98.1 Minus
Blast to na_te.dros performed on 2019-03-15 15:17:12 has no hits.

AT04835.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:17:55 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13446214..13448046 61..1893 100 <- Minus
chr2L 13448113..13448173 1..60 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:52:40 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60D-RB 1..1677 85..1761 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:43:23 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60D-RB 1..1677 85..1761 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:10:42 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60D-RA 1..1677 85..1761 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:11:50 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60D-RB 1..1677 85..1761 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:22 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60D-RA 1..1677 85..1761 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:07:59 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60D-RA 1..1894 1..1893 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:43:22 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60D-RA 1..1894 1..1893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:10:42 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60D-RA 1..1894 1..1893 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:11:50 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60D-RA 1..1894 1..1893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:22 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp60D-RA 1..1894 1..1893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:17:55 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13447538..13449370 61..1893 100 <- Minus
2L 13449437..13449497 1..60 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:17:55 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13447538..13449370 61..1893 100 <- Minus
2L 13449437..13449497 1..60 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:17:55 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13447538..13449370 61..1893 100 <- Minus
2L 13449437..13449497 1..60 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:10:42 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13447538..13449370 61..1893 100 <- Minus
arm_2L 13449437..13449497 1..60 96   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:21 Download gff for AT04835.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13447538..13449370 61..1893 100 <- Minus
2L 13449437..13449497 1..60 96   Minus

AT04835.pep Sequence

Translation from 84 to 1760

> AT04835.pep
MLSRLGRSGRAGVRTFANDIRFGAEARCLLMQGVNVLANAVATTLGPKGR
NVLIEQLLISPRITKDGITVANNVQLGNRRQDMGVQLLRQATNNTNNKVG
DGTTTATILARGIACQGMHVLRQSKVNVQLLREGILEGSRAVCDALGEMS
QSVDTIGQVEAVAKVALNGDERLAELIGDIILELGDSGVILLKESHSPFD
EAKIQEGITIASGYYSPFFAKQSHTLELENCLLLLTLAKIDQVEQILPAL
ELARLKERPLLIIAKNFGSDLLKILVLNNLQGRVQVCAVKAPSFGDEQCE
EMEDIAFATGGHLLEDASSLADLSEEDLGEVMEAVVDAKETHLLQPINVN
EEQVQCRIQDIRELIDEAFTDVELDRLKTRLGRLQGHLATIFVGGTSELE
VSERKDRFNDALHAVRVAISDGVVPGGGTAYLRCIPVLDELPPTDIMELQ
VGREIVKDALRLPCYTIARNAGVDPNEVLRRVLKGSGNYGYDAAAGEFGD
LVVRGIVDPTKVLQSAMTSAAGIASLLATTEVLITKQPTKPKIPKNQVTK
DLAKLVGM*

AT04835.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21637-PA 560 GF21637-PA 1..560 1..558 1918 65.4 Plus
Dana\GF15575-PA 625 GF15575-PA 73..601 12..538 1166 44.9 Plus
Dana\GF20294-PA 573 GF20294-PA 8..552 2..544 1161 43.6 Plus
Dana\GF20641-PA 651 GF20641-PA 11..542 7..535 1116 43.6 Plus
Dana\GF13619-PA 546 GF13619-PA 12..537 19..533 188 25 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10196-PA 560 GG10196-PA 1..560 1..558 2624 89.8 Plus
Dere\GG18391-PA 573 GG18391-PA 8..546 2..538 1148 43.9 Plus
Dere\GG25088-PA 577 GG25088-PA 25..551 14..538 1132 44.2 Plus
Dere\GG24737-PA 651 GG24737-PA 12..542 8..535 1114 44.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17925-PA 573 GH17925-PA 8..552 2..544 1157 44.2 Plus
Dgri\GH11038-PA 579 GH11038-PA 23..555 14..544 1118 43.1 Plus
Dgri\GH11219-PA 626 GH11219-PA 11..543 7..536 1040 43.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp60D-PB 558 CG16954-PB 1..558 1..558 2779 100 Plus
Hsp60D-PA 558 CG16954-PA 1..558 1..558 2779 100 Plus
Hsp60A-PB 573 CG12101-PB 8..552 2..544 1133 43.4 Plus
Hsp60A-PA 573 CG12101-PA 8..552 2..544 1133 43.4 Plus
Hsp60C-PB 576 CG7235-PB 24..550 14..538 1120 44.3 Plus
Hsp60C-PC 576 CG7235-PC 24..550 14..538 1120 44.3 Plus
Hsp60C-PA 576 CG7235-PA 24..550 14..538 1120 44.3 Plus
Hsp60B-PA 648 CG2830-PA 12..542 8..535 1101 44.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16304-PA 573 GI16304-PA 8..552 2..544 1169 44.2 Plus
Dmoj\GI17556-PA 585 GI17556-PA 23..560 9..544 1130 43.4 Plus
Dmoj\GI21603-PA 638 GI21603-PA 11..542 7..535 1107 44.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25699-PA 564 GL25699-PA 1..564 1..558 1861 63.7 Plus
Dper\GL18870-PA 611 GL18870-PA 11..541 7..535 1103 43.8 Plus
Dper\GL26372-PA 579 GL26372-PA 23..551 14..538 994 39.9 Plus
Dper\GL22976-PA 492 GL22976-PA 24..492 69..537 499 32 Plus
Dper\GL27099-PA 1457 GL27099-PA 1343..1430 451..538 260 54.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14234-PA 564 GA14234-PA 1..564 1..558 1858 63.7 Plus
Dpse\GA22684-PA 573 GA22684-PA 8..546 2..538 1159 44.1 Plus
Dpse\GA28835-PA 577 GA28835-PA 23..549 14..538 1128 43.8 Plus
Dpse\GA25838-PA 634 GA25838-PA 11..541 7..535 1112 44 Plus
Dpse\GA22285-PA 492 GA22285-PA 24..492 69..537 492 31.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25499-PA 322 GM25499-PA 1..322 237..558 1601 95.3 Plus
Dsec\GM18564-PA 576 GM18564-PA 23..550 13..538 1144 44.3 Plus
Dsec\GM16759-PA 651 GM16759-PA 12..542 8..535 1111 44.6 Plus
Dsec\GM25488-PA 219 GM25488-PA 1..207 1..207 1034 97.1 Plus
Dsec\GM11458-PA 858 GM11458-PA 8..454 2..445 888 42.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22056-PA 558 GD22056-PA 1..558 1..558 2695 94.8 Plus
Dsim\GD23355-PA 576 GD23355-PA 23..550 13..538 1143 44.1 Plus
Dsim\GD17003-PA 573 GD17003-PA 8..546 2..538 1139 43.5 Plus
Dsim\GD23041-PA 651 GD23041-PA 12..542 8..535 1103 44.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15640-PA 573 GJ15640-PA 8..552 2..544 1178 44.3 Plus
Dvir\GJ15562-PA 583 GJ15562-PA 21..559 8..544 1128 43.2 Plus
Dvir\GJ17770-PA 634 GJ17770-PA 11..543 7..536 1125 45.6 Plus
Dvir\GJ19440-PA 533 GJ19440-PA 21..528 26..544 156 21.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15276-PA 558 GK15276-PA 1..558 1..558 1719 60.4 Plus
Dwil\GK14688-PA 582 GK14688-PA 25..551 14..538 1147 44.9 Plus
Dwil\GK16370-PA 575 GK16370-PA 22..548 14..538 1138 44.2 Plus
Dwil\GK23787-PA 639 GK23787-PA 13..543 8..535 1103 44.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11569-PA 558 GE11569-PA 1..558 1..558 2574 91 Plus
Dyak\GE15908-PA 573 GE15908-PA 8..546 2..538 1152 44.3 Plus
Dyak\GE25548-PA 577 GE25548-PA 25..551 14..538 1132 44 Plus
Dyak\GE17001-PA 657 GE17001-PA 12..546 8..539 1104 44.1 Plus

AT04835.hyp Sequence

Translation from 84 to 1760

> AT04835.hyp
MLSRLGRSGRAGVRTFANDIRFGAEARCLLMQGVNVLANAVATTLGPKGR
NVLIEQLLISPRITKDGITVANNVQLGNRRQDMGVQLLRQATNNTNNKVG
DGTTTATILARGIACQGMHVLRQSKVNVQLLREGILEGSRAVCDALGEMS
QSVDTIGQVEAVAKVALNGDERLAELIGDIILELGDSGVILLKESHSPFD
EAKIQEGITIASGYYSPFFAKQSHTLELENCLLLLTLAKIDQVEQILPAL
ELARLKERPLLIIAKNFGSDLLKILVLNNLQGRVQVCAVKAPSFGDEQCE
EMEDIAFATGGHLLEDASSLADLSEEDLGEVMEAVVDAKETHLLQPINVN
EEQVQCRIQDIRELIDEAFTDVELDRLKTRLGRLQGHLATIFVGGTSELE
VSERKDRFNDALHAVRVAISDGVVPGGGTAYLRCIPVLDELPPTDIMELQ
VGREIVKDALRLPCYTIARNAGVDPNEVLRRVLKGSGNYGYDAAAGEFGD
LVVRGIVDPTKVLQSAMTSAAGIASLLATTEVLITKQPTKPKIPKNQVTK
DLAKLVGM*

AT04835.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp60D-PB 558 CG16954-PB 1..558 1..558 2779 100 Plus
Hsp60D-PA 558 CG16954-PA 1..558 1..558 2779 100 Plus
Hsp60-PB 573 CG12101-PB 8..552 2..544 1133 43.4 Plus
Hsp60-PA 573 CG12101-PA 8..552 2..544 1133 43.4 Plus
Hsp60C-PB 576 CG7235-PB 24..550 14..538 1120 44.3 Plus