Clone AT04910 Report

Search the DGRC for AT04910

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:49
Well:10
Vector:pOTB7
Associated Gene/TranscriptIdh-RD
Protein status:AT04910.pep: gold
Sequenced Size:1638

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Idh-RD 2009-06-22 Replacement based on scoring

Clone Sequence Records

AT04910.complete Sequence

1638 bp assembled on 2009-08-06

GenBank Submission: BT099506.1

> AT04910.complete
ATAAGTTTCGCCTGTATCGCCTGTGCTTAGGACCCCAAAACCCATAAGAT
ATCCATGGATAATGAAAGGATGTCCGCCGTGAGCGAGCACTCAAGTGTGG
TATGCTCTCCCGAACAGATGGCCCAGAAGATCAAAGCCGGTCCCGTTGTG
GATGTCCTCGGTGACGAGATGACCCGCATCATTTGGGACTCCATTAAGAG
CCAACTGATTCTGCCCTTCCTGGACATTGAGCTGCATACCTACGATCTGG
GTATTGAGAACCGCGATAAAACCGAGGACCAGGTCACCATTGACTGTGCT
GAGGCCATCAAGAAGTACAACGTGGGCATCAAGTGCGCCACAATCACTCC
CGACGAGAAGCGCGTAGAGGAGTTCAACCTGAAGAAGATGTGGAAGTCGC
CCAACGGTACCATCCGTAACATCTTGGGAGGAACCGTCTTCCGTGAGGCA
ATCATCTGCAAGAACGTGCCCCGTCTGGTGACTGGCTGGCAGAAGCCTAT
TGTGATCGGTCGCCATGCCCACGCCGATCAGTACAAGGCCGTCGACTACG
TGGTTCCCGGACCCGGCAAGCTGACCCTCACCTGGAAGGGAACCGACGGT
CAGGTCATCGATGAGGTCATTAATGACTTCAAGGGCCCCGGTATTGCCCT
GGGAATGTTCAACACGGACGATTCCATTGTGGACTTTGCCCACGCCTCTT
TCAAATATGCTCTGGACCGCAAGCTGCCGCTGTACATGAGCACCAAGAAC
ACCATTCTGAAGAAGTACGATGGACGCTTCAAGGACATATTCGAGGACCT
GTACAACAAGCAGTACAAGAAGGAGTACGAGGCGGCGGGCATCTGGTATG
AGCACCGTCTCATCGACGATATGGTTGCTTATGCCATGAAGTCGGAGGGT
GGCTTCGTGTGGGCCTGCAAGAACTACGACGGTGATGTGCAGTCGGACTC
CGTTGCCCAGGGATACGGATCTCTGGGTCTGATGACCTCCGTGCTGCTAT
GCCCCGATGGCAAGACCGTGGAGGCTGAAGCCGCTCACGGAACGGTGACG
CGTCACTTCCGCTTCTACCAGCAGGGCAAGGAGACCTCCACCAACCCCAT
TGCCTCGATATTCGCCTGGACCCGTGGCCTGCTGCATCGTGCCAAGCTGG
ACAACAATGAGCCACTGAAGCAGTTCGCCGACACCCTTGAGCAGGTGTGC
ATCGACACAATTGAGAGCGGCGCCATGACCAAGGATCTGGCCATCTGCAT
TAAAGGCAACATCAACGCCGTTACTCGCAGGGACTACCAGGAGACTTTTG
AGTTCATTAACACGCTGGCCAAGAACCTGGAGGGTGCCCTGGCCAAGAAT
GCCGTTGCTGCCAAATGACTATCCGGCACTCAGTCCGAGCAGCAGGCCTC
GCATCTCTAGAAAACTACTCAGCGATGCCTTGTCCTCTTCACCATATTCA
CAATATTTCCATTCGTTTTTGTAGATGTGCATGTCCTAGGCTAAAAATCC
GTGTCCTCGATGCATGTTTCCCACTGTTTCATTGTCTCTGCGAGACGCAA
AAAAAAACCCTGATTTCCCTTTAACGTCTAACGGAAAAGAAATTTCAAAT
AAATGTATTTTTATACCGGAAAAAAAAAAAAAAAAAAA

AT04910.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Idh-RD 1692 Idh-RD 24..1643 1..1620 8025 99.6 Plus
Idh-RC 1892 Idh-RC 364..1868 116..1620 7450 99.6 Plus
Idh-RH 1671 Idh-RH 143..1647 116..1620 7450 99.6 Plus
Idh-RC 1892 Idh-RC 308..365 30..87 290 100 Plus
Idh-RH 1671 Idh-RH 88..144 31..87 285 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8348433..8349966 1619..86 7625 99.8 Minus
chr3L 24539361 chr3L 8350045..8350131 87..1 435 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:40:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8356403..8357937 1620..86 7600 99.7 Minus
3L 28110227 3L 8358016..8358102 87..1 435 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8349503..8351037 1620..86 7600 99.6 Minus
3L 28103327 3L 8351116..8351202 87..1 435 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:32:07 has no hits.

AT04910.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:33:02 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8348433..8349964 88..1619 99 <- Minus
chr3L 8350045..8350131 1..87 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:13:03 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RD 1..1314 55..1368 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:56:56 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RD 1..1314 55..1368 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:18 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RK 97..1440 25..1368 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:33:13 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RK 97..1440 25..1368 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-06 17:23:55 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RD 24..1642 1..1619 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:56:56 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RD 24..1642 1..1619 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:18 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RD 24..1642 1..1619 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:33:13 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
Idh-RD 24..1642 1..1619 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:02 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8356404..8357935 88..1619 99 <- Minus
3L 8358016..8358102 1..87 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:02 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8356404..8357935 88..1619 99 <- Minus
3L 8358016..8358102 1..87 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:02 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8356404..8357935 88..1619 99 <- Minus
3L 8358016..8358102 1..87 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:18 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8349504..8351035 88..1619 99 <- Minus
arm_3L 8351116..8351202 1..87 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:48:29 Download gff for AT04910.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8349504..8351035 88..1619 99 <- Minus
3L 8351116..8351202 1..87 100   Minus

AT04910.pep Sequence

Translation from 54 to 1367

> AT04910.pep
MDNERMSAVSEHSSVVCSPEQMAQKIKAGPVVDVLGDEMTRIIWDSIKSQ
LILPFLDIELHTYDLGIENRDKTEDQVTIDCAEAIKKYNVGIKCATITPD
EKRVEEFNLKKMWKSPNGTIRNILGGTVFREAIICKNVPRLVTGWQKPIV
IGRHAHADQYKAVDYVVPGPGKLTLTWKGTDGQVIDEVINDFKGPGIALG
MFNTDDSIVDFAHASFKYALDRKLPLYMSTKNTILKKYDGRFKDIFEDLY
NKQYKKEYEAAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSV
AQGYGSLGLMTSVLLCPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIA
SIFAWTRGLLHRAKLDNNEPLKQFADTLEQVCIDTIESGAMTKDLAICIK
GNINAVTRRDYQETFEFINTLAKNLEGALAKNAVAAK*

AT04910.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10112-PA 469 GF10112-PA 44..458 1..426 2109 92.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15087-PA 479 GG15087-PA 43..467 1..425 2216 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16411-PA 446 GH16411-PA 29..444 16..433 2044 89.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
Idh-PK 479 CG7176-PK 43..479 1..437 2298 100 Plus
Idh-PD 437 CG7176-PD 1..437 1..437 2298 100 Plus
Idh-PC 469 CG7176-PC 43..469 1..437 2223 97.7 Plus
Idh-PJ 450 CG7176-PJ 35..450 22..437 2191 100 Plus
Idh-PI 450 CG7176-PI 35..450 22..437 2191 100 Plus
Idh-PG 450 CG7176-PG 35..450 22..437 2191 100 Plus
Idh-PB 450 CG7176-PB 35..450 22..437 2191 100 Plus
Idh-PF 416 CG7176-PF 1..416 22..437 2191 100 Plus
Idh-PA 416 CG7176-PA 1..416 22..437 2191 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12492-PA 441 GI12492-PA 24..433 22..431 2064 91.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24577-PA 448 GL24577-PA 28..437 17..426 2082 92.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20156-PA 448 GA20156-PA 28..437 17..426 2082 92.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24945-PA 469 GM24945-PA 43..469 1..437 2216 94.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12997-PA 479 GD12997-PA 43..479 1..437 2297 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12396-PA 452 GJ12396-PA 33..444 22..433 2094 92.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18037-PA 449 GK18037-PA 29..449 17..437 2123 92.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21312-PA 469 GE21312-PA 43..458 1..426 2159 93.7 Plus

AT04910.hyp Sequence

Translation from 54 to 1367

> AT04910.hyp
MDNERMSAVSEHSSVVCSPEQMAQKIKAGPVVDVLGDEMTRIIWDSIKSQ
LILPFLDIELHTYDLGIENRDKTEDQVTIDCAEAIKKYNVGIKCATITPD
EKRVEEFNLKKMWKSPNGTIRNILGGTVFREAIICKNVPRLVTGWQKPIV
IGRHAHADQYKAVDYVVPGPGKLTLTWKGTDGQVIDEVINDFKGPGIALG
MFNTDDSIVDFAHASFKYALDRKLPLYMSTKNTILKKYDGRFKDIFEDLY
NKQYKKEYEAAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSV
AQGYGSLGLMTSVLLCPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIA
SIFAWTRGLLHRAKLDNNEPLKQFADTLEQVCIDTIESGAMTKDLAICIK
GNINAVTRRDYQETFEFINTLAKNLEGALAKNAVAAK*

AT04910.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Idh-PK 479 CG7176-PK 43..479 1..437 2298 100 Plus
Idh-PD 437 CG7176-PD 1..437 1..437 2298 100 Plus
Idh-PC 469 CG7176-PC 43..469 1..437 2223 97.7 Plus
Idh-PJ 450 CG7176-PJ 35..450 22..437 2191 100 Plus
Idh-PI 450 CG7176-PI 35..450 22..437 2191 100 Plus