Clone AT05339 Report

Search the DGRC for AT05339

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:53
Well:39
Vector:pOTB7
Associated Gene/TranscriptSP555-RA
Protein status:AT05339.pep: gold
Sequenced Size:1416

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14042 2008-10-28 Manual selection by Sue Celniker

Clone Sequence Records

AT05339.complete Sequence

1416 bp assembled on 2009-04-13

GenBank Submission: BT088435.1

> AT05339.complete
ATTGATACAAATTGAGAAGCGAAAAAATTTCTAGTCGCAACACAATGTCT
GATGTTGAAGTGGATCCACAGCAGGCTCACCCCCATCCCATAGCGGCAAT
TGCCCCGAGGAGACGTCGTCCAACCGGTCGACGAGGAGGAGTAACAGGAG
GGTTGTCGTCCGGTTCACTGGATGCATCATCTTCCACATCGCCGCCACCC
CGTTTCTGTCCGCTGCCCAATGGCGTTGAGGATAACTGGACGTGGAGCAA
GCGGCACCGCTCCAAGGAAGTGGTGCTCAGAGGACCCAACTCGCGGACCG
TGCACTTCCATCCCAACTGGAGCAAGGGCACTGCCGGTGTCCAGGGCAAA
AGATCCCTGAATAACGGACGGCATTACTGGGAGCTTCATGTCTCGCAGCG
CGTCTTTGGCACCTCGATAATGTTCGGTATCGGTACCAAGTCGGCACGGC
TACATGCCAACGCCTTCCGGAACATGCTGGGCGAGAACGAACACGGCTGG
GGACTGTCCCACAAGGGCGTGCTCTGGCACGAGGGCGTGGCCCTGCTGTA
CACGAAGCGGTTCCGCGAGAATCAACCCACCCAAATTGGCGTTCTCTTCG
ATGGCATTGAGGGCACACTCACCTTCTACAAGGATGGCAAGTGCCTGGGC
GTTGCTTTCCGCGGATTGGATCAGATTGATGAGCCCCTGTACCCCATCGT
ATGCTCTACTGCCGCCAAAACGGAGATGACCCTAAAGTGCACCAGGAGGG
AGTTCGTCAACCTACAGGATCGCTGTCGGGCGGTGATCATGCGCCGCGTA
CGAAGCGCTGCGCAGCTGGAGAAGCTGAAGCTGCCGCTGCCCATCGCCGA
CTATCTGAGCGAGGTGATCGACGAGAAGAAGCCACTGCGTCAGGTGAATC
AGCTGGAGATGTGCATTATGAATTACGATTTGTATGAGGCCCGTGAATGA
TTTTAGTGCCATCACATATTGGAGTGCCCAATGACTACCAGACGATGCAG
TGGCTCCTCTGGGACGTGTGCATTTCTCGTAGTAGCTTTAGAGCGTGCTA
AGTTTAAGCATTCGGAATTTGTGTGGATAATAGTCGTCCGACCTTTTGAT
TTGTCTTCATTTGTAGCGAAAATGTGGGAAAATAGGCCAATTTGGTGCAA
TATTTGTGATATAAGAAATGAGAAAAACGTTTTTCGGGGCTTCAAGTGCT
TGCTAGAAAATCGCAAAATAATCTAGAGCTAAGCATATTTTTCGGTACAG
ACGAGTGTGAAATCTAGTCAAAAAGAACACGCTGCTAAACTAATTTTGTA
AATTCGCAGACAGCAATTAAGGCCTAAGTACTGTAATGTAACAAAATGAA
AATGTGTCTAGTCATAAATTGCATATAAAGCAAAGTGTAATTTAGTAAAA
AAAAAAAAAAAAAAAA

AT05339.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
SP555-RA 2606 SP555-RA 1015..2415 1..1401 7005 100 Plus
SP555-RB 2698 SP555-RB 1015..1909 1..895 4475 100 Plus
CG14042-RB 2696 CG14042-RB 1015..1909 1..895 4475 100 Plus
SP555-RB 2698 SP555-RB 1997..2507 891..1401 2555 100 Plus
CG14042-RB 2696 CG14042-RB 1997..2507 891..1401 2555 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5038167..5038840 1..674 3370 100 Plus
chr2L 23010047 chr2L 5039217..5039722 891..1396 2530 100 Plus
chr2L 23010047 chr2L 5038906..5039129 672..895 1120 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:40:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5039067..5039740 1..674 3370 100 Plus
2L 23513712 2L 5040117..5040627 891..1401 2555 100 Plus
2L 23513712 2L 5039806..5040029 672..895 1120 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5039067..5039740 1..674 3370 100 Plus
2L 23513712 2L 5040117..5040627 891..1401 2555 100 Plus
2L 23513712 2L 5039806..5040029 672..895 1120 100 Plus
Blast to na_te.dros performed on 2019-03-15 14:57:37 has no hits.

AT05339.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:58:18 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5038167..5038840 1..674 100 -> Plus
chr2L 5038909..5039127 675..893 100 -> Plus
chr2L 5039220..5039722 894..1396 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:09:46 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
SP555-RA 1..906 45..950 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:45:33 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
SP555-RA 1..906 45..950 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:55:03 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
SP555-RA 1..906 45..950 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:19:47 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
SP555-RA 1..906 45..950 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-27 15:32:22 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
CG14042-RA 1015..2410 1..1396 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:45:32 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
CG14042-RA 1015..2410 1..1396 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:55:03 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
SP555-RA 1015..2410 1..1396 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:19:47 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
CG14042-RA 1270..2665 1..1396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:58:18 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5039067..5039740 1..674 100 -> Plus
2L 5039809..5040027 675..893 100 -> Plus
2L 5040120..5040622 894..1396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:58:18 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5039067..5039740 1..674 100 -> Plus
2L 5039809..5040027 675..893 100 -> Plus
2L 5040120..5040622 894..1396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:58:18 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5039067..5039740 1..674 100 -> Plus
2L 5039809..5040027 675..893 100 -> Plus
2L 5040120..5040622 894..1396 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:55:03 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5039067..5039740 1..674 100 -> Plus
arm_2L 5039809..5040027 675..893 100 -> Plus
arm_2L 5040120..5040622 894..1396 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:20:50 Download gff for AT05339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5039067..5039740 1..674 100 -> Plus
2L 5039809..5040027 675..893 100 -> Plus
2L 5040120..5040622 894..1396 100   Plus

AT05339.hyp Sequence

Translation from 44 to 949

> AT05339.hyp
MSDVEVDPQQAHPHPIAAIAPRRRRPTGRRGGVTGGLSSGSLDASSSTSP
PPRFCPLPNGVEDNWTWSKRHRSKEVVLRGPNSRTVHFHPNWSKGTAGVQ
GKRSLNNGRHYWELHVSQRVFGTSIMFGIGTKSARLHANAFRNMLGENEH
GWGLSHKGVLWHEGVALLYTKRFRENQPTQIGVLFDGIEGTLTFYKDGKC
LGVAFRGLDQIDEPLYPIVCSTAAKTEMTLKCTRREFVNLQDRCRAVIMR
RVRSAAQLEKLKLPLPIADYLSEVIDEKKPLRQVNQLEMCIMNYDLYEAR
E*

AT05339.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
SP555-PC 301 CG14041-PC 1..301 1..301 1612 100 Plus
SP555-PA 301 CG14041-PA 1..301 1..301 1612 100 Plus
SP555-PD 293 CG14041-PD 1..289 1..296 1524 97 Plus
SP555-PB 293 CG14041-PB 1..289 1..296 1524 97 Plus
CG10516-PA 342 CG10516-PA 45..245 59..261 291 36.7 Plus

AT05339.pep Sequence

Translation from 44 to 949

> AT05339.pep
MSDVEVDPQQAHPHPIAAIAPRRRRPTGRRGGVTGGLSSGSLDASSSTSP
PPRFCPLPNGVEDNWTWSKRHRSKEVVLRGPNSRTVHFHPNWSKGTAGVQ
GKRSLNNGRHYWELHVSQRVFGTSIMFGIGTKSARLHANAFRNMLGENEH
GWGLSHKGVLWHEGVALLYTKRFRENQPTQIGVLFDGIEGTLTFYKDGKC
LGVAFRGLDQIDEPLYPIVCSTAAKTEMTLKCTRREFVNLQDRCRAVIMR
RVRSAAQLEKLKLPLPIADYLSEVIDEKKPLRQVNQLEMCIMNYDLYEAR
E*

AT05339.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15713-PA 304 GF15713-PA 1..304 1..296 1243 81.6 Plus
Dana\GF24101-PA 339 GF24101-PA 15..243 55..261 275 31.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25044-PA 301 GG25044-PA 1..301 1..301 1443 92.7 Plus
Dere\GG15936-PA 342 GG15936-PA 17..245 55..261 305 34.5 Plus
Dere\GG23140-PA 349 GG23140-PA 56..343 19..271 242 27.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11484-PA 283 GH11484-PA 1..281 1..296 1135 73 Plus
Dgri\GH14773-PA 345 GH14773-PA 48..244 59..262 268 33.7 Plus
Dgri\GH13013-PA 349 GH13013-PA 117..343 56..271 232 28.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
SP555-PC 301 CG14041-PC 1..301 1..301 1612 100 Plus
SP555-PA 301 CG14041-PA 1..301 1..301 1612 100 Plus
SP555-PD 293 CG14041-PD 1..289 1..296 1524 97 Plus
SP555-PB 293 CG14041-PB 1..289 1..296 1524 97 Plus
CG10516-PA 342 CG10516-PA 45..245 59..261 291 36.7 Plus
gus-PM 279 CG2944-PM 5..273 33..271 236 27.9 Plus
gus-PL 279 CG2944-PL 5..273 33..271 236 27.9 Plus
gus-PK 279 CG2944-PK 5..273 33..271 236 27.9 Plus
gus-PJ 279 CG2944-PJ 5..273 33..271 236 27.9 Plus
gus-PI 279 CG2944-PI 5..273 33..271 236 27.9 Plus
gus-PH 279 CG2944-PH 5..273 33..271 236 27.9 Plus
gus-PG 279 CG2944-PG 5..273 33..271 236 27.9 Plus
Fsn-PA 255 CG4643-PA 83..246 67..230 196 32.7 Plus
Fsn-PB 255 CG4643-PB 83..246 67..230 196 32.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16979-PA 316 GI16979-PA 75..315 56..296 1117 83 Plus
Dmoj\GI11875-PA 342 GI11875-PA 48..246 59..261 274 33 Plus
Dmoj\GI18267-PA 349 GI18267-PA 117..343 56..271 230 27.8 Plus
Dmoj\GI18764-PA 252 GI18764-PA 79..243 66..230 177 30.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26545-PA 292 GL26545-PA 1..288 1..296 1147 75.3 Plus
Dper\GL15433-PA 349 GL15433-PA 127..343 66..271 247 29.5 Plus
Dper\GL12741-PA 163 GL12741-PA 51..154 65..169 185 38.9 Plus
Dper\GL10506-PA 255 GL10506-PA 82..246 66..230 180 30.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12721-PA 292 GA12721-PA 1..288 1..296 1147 75.3 Plus
Dpse\GA28209-PA 347 GA28209-PA 38..245 55..261 300 35.5 Plus
Dpse\GA23998-PA 349 GA23998-PA 127..343 66..271 247 29.5 Plus
Dpse\GA18323-PA 255 GA18323-PA 82..246 66..230 180 30.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18519-PA 301 GM18519-PA 1..301 1..301 1561 96.7 Plus
Dsec\GM26734-PA 349 GM26734-PA 56..343 19..271 244 27.8 Plus
Dsec\GM25566-PA 314 GM25566-PA 17..217 55..261 223 30.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12021-PA 301 GD12021-PA 1..301 1..301 1566 97 Plus
Dsim\GD16681-PA 349 GD16681-PA 56..343 19..271 244 27.8 Plus
Dsim\GD25778-PA 245 GD25778-PA 82..224 66..206 156 31.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17226-PA 299 GJ17226-PA 56..297 55..296 1156 84.3 Plus
Dvir\GJ13571-PA 342 GJ13571-PA 48..246 59..261 275 33 Plus
Dvir\GJ21895-PA 349 GJ21895-PA 117..343 56..271 234 28.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24858-PA 301 GK24858-PA 59..301 51..296 1133 83.7 Plus
Dwil\GK24452-PA 343 GK24452-PA 50..245 64..261 298 34.2 Plus
Dwil\GK14868-PA 349 GK14868-PA 127..343 66..271 239 29.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11313-PA 303 GE11313-PA 1..303 1..301 1451 92.7 Plus
Dyak\GE23167-PA 342 GE23167-PA 17..245 55..261 305 34.5 Plus
Dyak\gus-PA 349 GE11348-PA 75..343 33..271 241 27.6 Plus