Clone AT05453 Report

Search the DGRC for AT05453

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:54
Well:53
Vector:pOTB7
Associated Gene/Transcriptfy-RA
Protein status:AT05453.pep: gold
Preliminary Size:1880
Sequenced Size:1729

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13396 2002-01-01 Sim4 clustering to Release 2
CG13396 2002-04-21 Blastp of sequenced clone
CG13396 2003-01-01 Sim4 clustering to Release 3
fy 2008-04-29 Release 5.5 accounting
fy 2008-08-15 Release 5.9 accounting
fy 2008-12-18 5.12 accounting

Clone Sequence Records

AT05453.complete Sequence

1729 bp (1729 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113208

> AT05453.complete
CCTGAATCAGCTACAAAATACTGCATCTTACTGATTTATTACATTAAAAC
ACTAAAAGTATGCAAGTAATTCAGATAAAAGTTTAAAATAAATCATATTA
ATTTACTAGTGCATCGCTTATTTTCGATAATTCAAAACGAATCGATTTAA
TCGATGTAAGCATCATACGTAGCAGGTTCGGCGAAGAAGAAGAGCTGCGA
TGTCCATCTATTTGTTATGTTTGACAACAAACGGCGGATTGCCAGTGTTT
ACACGAAAGAAGGGAGAATGCGAAAATCTGCCCTTCTCGACGGTGGCCTC
CTTAAACGGCTTTCACATGTTCTTTAAGTCGCTGGGAATCCAACTGGAGG
CCACGACGACCAGCAAACAGCAGCCTATCCAGAATCAGGCTCCCGCGGAT
GCCGAGGAGTGGACTTACATATGGCGCGACCGGGAATCCATCACCCTGAT
CGTGTGCGGCTGCGGTGTTGGGTCGGAGCAACTGCTTCAGACGCTGGCTG
ATCTTGTCTTTGGAGCGATAGGCATGTTCATTACCCGGGCCGCAGAAATG
GCACATGCAACGCTCCTCGATAGACTGAAGAAGGACGCCAAGAAGTATGT
CCCGATTGTTGACGCTATTCTGGAAGCCGCCTGTGCGGGTACACAACTCC
TGGGCTACACGGACTGTCTGCTGGCGGCGGAAAACGCCCAGCTGCTGCAG
TGTCTAAATGAATTTAGTGGCCACTGTGGCTCGCTCTTTTGCTGCCTGGT
TGTGGGACACCGTATCGCTGTGGCCACTGAGGGCTGGTGGGATCTGGACA
CTCGGGACCGCGAGCTGCTGCTGTTTCTGTTGAATTCGTCGAGCACAATG
CAACACGATGTGCCGGTCTATTTGCCCGTGAAAAGTCCCCATATAGCCTA
CCGCTTTGTCAGTATTCCTGTGGCGTCGAACAGTGCTCTGTGTGTCCTGT
GTGGCGCTGAGAATGCCTCGTTCCGAGAGTTGCATGCACATGCCATGAGT
GCCTACCGGAATGAAGGCAACCTTTTGGCAGCCGCCGAGCGATGCGTGCC
GCGCAGTCTGCCCGAGCATCTGGAGATCGATGGAAATGTGCTGGCCATCA
TTCTAATTAACCGACACACGCGAAAAAGTCTCTTTACCAGAAATCTAAAC
CAGTCGGCGAGTGTCAAGCGCATCATTGTGGGCGATCTACAGCGCTTGGA
CATTCTAAAGAAGTTTTTCGATCAAACTATGGATGCAGTCCACCAATTTG
AAACCCAGTCGTCCAGCAATAAAACTACGTTAGTGGACCAATATAGCTGC
TCGGACTACCACAAGTGCTATGCCCATATGGATGAGCTGGGCAATGTCAT
ATTCTTGTTGTTTGTGGCAGCGGTGCCCTCGCACGCAATGAGATTCCTTG
CGCAACGCATCCATGCTAATATACTCCAGGAGAAGTCAGTATGTTGGTGA
TACGATATTTCTTTCTAAGCCTAAAGACTGATTTTTGTTACTACTTTTCC
ATGAAATAATGTTTTTTTTTAAATGACATTATATTTAACGAACAATAGGG
TACAACTCCTTTTCTAAAGTTAAGCGTAATTTTTGACAAATCTTATATGT
ATATGCTACATACTAATATGGCTTTAATGACTTACAATTCCGTCCTTACA
AATACTATTTATATATTTTAAATATACAATATGTCCTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT05453.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
fy-RA 1935 fy-RA 165..1853 1..1689 8445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8400742..8401856 1392..278 5575 100 Minus
chr2L 23010047 chr2L 8400387..8400684 1688..1391 1490 100 Minus
chr2L 23010047 chr2L 8401915..8402191 277..1 1385 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:41:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8401831..8402945 1392..278 5575 100 Minus
2L 23513712 2L 8401475..8401773 1689..1391 1495 100 Minus
2L 23513712 2L 8403004..8403280 277..1 1385 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8401831..8402945 1392..278 5575 100 Minus
2L 23513712 2L 8401475..8401773 1689..1391 1495 100 Minus
2L 23513712 2L 8403004..8403280 277..1 1385 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:52:43 has no hits.

AT05453.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:53:49 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8400387..8400682 1393..1688 92 <- Minus
chr2L 8400742..8401856 278..1392 100 <- Minus
chr2L 8401915..8402191 1..277 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:53:31 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
fy-RA 1..1251 200..1450 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:02:01 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
fy-RA 1..1251 200..1450 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:14:36 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
fy-RA 1..1251 200..1450 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:10 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
fy-RA 1..1251 200..1450 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:33 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
fy-RA 1..1251 200..1450 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:43:21 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
fy-RA 163..1850 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:02:01 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
fy-RA 163..1850 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:36 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
fy-RA 1..1688 1..1688 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:10 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
fy-RA 163..1850 1..1688 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:33 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
fy-RA 1..1688 1..1688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:53:49 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8403004..8403280 1..277 100   Minus
2L 8401476..8401771 1393..1688 100 <- Minus
2L 8401831..8402945 278..1392 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:53:49 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8403004..8403280 1..277 100   Minus
2L 8401476..8401771 1393..1688 100 <- Minus
2L 8401831..8402945 278..1392 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:53:49 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8403004..8403280 1..277 100   Minus
2L 8401476..8401771 1393..1688 100 <- Minus
2L 8401831..8402945 278..1392 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:36 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8401476..8401771 1393..1688 100 <- Minus
arm_2L 8401831..8402945 278..1392 100 <- Minus
arm_2L 8403004..8403280 1..277 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:26 Download gff for AT05453.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8403004..8403280 1..277 100   Minus
2L 8401476..8401771 1393..1688 100 <- Minus
2L 8401831..8402945 278..1392 100 <- Minus

AT05453.hyp Sequence

Translation from 199 to 1449

> AT05453.hyp
MSIYLLCLTTNGGLPVFTRKKGECENLPFSTVASLNGFHMFFKSLGIQLE
ATTTSKQQPIQNQAPADAEEWTYIWRDRESITLIVCGCGVGSEQLLQTLA
DLVFGAIGMFITRAAEMAHATLLDRLKKDAKKYVPIVDAILEAACAGTQL
LGYTDCLLAAENAQLLQCLNEFSGHCGSLFCCLVVGHRIAVATEGWWDLD
TRDRELLLFLLNSSSTMQHDVPVYLPVKSPHIAYRFVSIPVASNSALCVL
CGAENASFRELHAHAMSAYRNEGNLLAAAERCVPRSLPEHLEIDGNVLAI
ILINRHTRKSLFTRNLNQSASVKRIIVGDLQRLDILKKFFDQTMDAVHQF
ETQSSSNKTTLVDQYSCSDYHKCYAHMDELGNVIFLLFVAAVPSHAMRFL
AQRIHANILQEKSVCW*

AT05453.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
fy-PB 416 CG13396-PB 1..416 1..416 2168 100 Plus
fy-PA 416 CG13396-PA 1..416 1..416 2168 100 Plus

AT05453.pep Sequence

Translation from 199 to 1449

> AT05453.pep
MSIYLLCLTTNGGLPVFTRKKGECENLPFSTVASLNGFHMFFKSLGIQLE
ATTTSKQQPIQNQAPADAEEWTYIWRDRESITLIVCGCGVGSEQLLQTLA
DLVFGAIGMFITRAAEMAHATLLDRLKKDAKKYVPIVDAILEAACAGTQL
LGYTDCLLAAENAQLLQCLNEFSGHCGSLFCCLVVGHRIAVATEGWWDLD
TRDRELLLFLLNSSSTMQHDVPVYLPVKSPHIAYRFVSIPVASNSALCVL
CGAENASFRELHAHAMSAYRNEGNLLAAAERCVPRSLPEHLEIDGNVLAI
ILINRHTRKSLFTRNLNQSASVKRIIVGDLQRLDILKKFFDQTMDAVHQF
ETQSSSNKTTLVDQYSCSDYHKCYAHMDELGNVIFLLFVAAVPSHAMRFL
AQRIHANILQEKSVCW*

AT05453.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14679-PA 415 GF14679-PA 1..415 1..416 1873 87.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23442-PA 416 GG23442-PA 1..416 1..416 2198 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13492-PA 408 GH13492-PA 1..408 1..416 1529 70.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
fy-PB 416 CG13396-PB 1..416 1..416 2168 100 Plus
fy-PA 416 CG13396-PA 1..416 1..416 2168 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17242-PA 407 GI17242-PA 1..407 1..416 1509 70.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25803-PA 416 GL25803-PA 1..416 1..416 1892 86.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12254-PA 416 GA12254-PA 1..416 1..416 1892 86.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12954-PA 416 GM12954-PA 1..416 1..416 2212 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22404-PA 405 GD22404-PA 1..405 1..416 1961 91.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18001-PA 407 GJ18001-PA 1..407 1..416 1494 69.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18678-PA 416 GK18678-PA 1..416 1..416 1680 75.7 Plus
Dwil\GK18385-PA 416 GK18385-PA 1..416 1..416 1634 75.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10996-PA 416 GE10996-PA 1..416 1..416 2218 99 Plus