Clone AT05857 Report

Search the DGRC for AT05857

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:58
Well:57
Vector:pOTB7
Associated Gene/TranscriptTrxT-RA
Protein status:AT05857.pep: gold
Sequenced Size:1204

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
TrxT 2009-06-08 Manual selection by Joe Carlson

Clone Sequence Records

AT05857.complete Sequence

1204 bp assembled on 2009-09-23

GenBank Submission: BT099835.1

> AT05857.complete
CTCGGCGAGGGCAGAGCTCCATTAAAATTCAAAATTAAAGTCATGGTGTA
CCCAGTGCGGAACAAGGACGATCTTGACCAGCAGCTAATCCTCGCCGAGG
ACAAGCTGGTGGTAATTGATTTTTATGCAGACTGGTGCGGACCTTGCAAG
ATAATAGCACCCAAGCTGGACGAACTGGCGCAGCAGTACTCGGACCGTGT
CGTCGTACTCAAGGTGAACGTGGACGAGAACGAGGACATTACGGTCGAAT
ACAATGTGAATAGCATGCCCACTTTTGTGTTCATCAAGGGCGGCAATGTG
CTGGAGCTCTTCGTTGGCTGCAATTCCGATAAGCTGGCCAAATTGATGGA
GAAGCATGCCGGCGTTTATACCGATGAAGCGGCCGACGTTAAGGCCGTCC
ATATCGATGGCGAATGCATTGTCGATCTGACCGCCGAGTCCAGTGAAAGC
GACAACGACAACAACAACGTTAATGAGGTGTCCGCCCACGACGAGAATGC
CGTTCTGGAGCACTAGGCAAAAGTACCATTACACTCCGAACATAACGACA
ACATATGTATCTCATCATTCAACAGACGTAACGGAAGAAAGCAATAGATA
TATATATATATATATACATAGACACACACACACACACACACACACACTTA
TCGATGTATATATATATATATATATATATAATACACACACTTATCCCAGA
TTTATTATGCACACTCATAATACTCATCATTTGTGGTGCCTAAAGTATGA
TGATTGCATTACAATTGTAAGCCTGATGATGTTGTTACGGCGGAGGAGGA
CTACGTCGCTGAACGATTCTACATATAGCAAACATTTTGGGAATCCGAGG
ACTTGTGGGACTTACTCAACACACGCTCCCGCACACCAAACTGATGTTGA
TTTTGCAGCGAGCTTGATACACCATGCAGACTGAGCAAAGGGACGCTATA
TATATATATATATATACTACTATACACCATATACTATACACTAAATGGAA
ATATGTACAATCGACCGACATAAATAATACGCATTACTAGCTGTTAGTTA
TAAGTTTGCAGACAAACAAATAGATCTACACAATAAACAATCAACTATTC
TATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

AT05857.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
TrxT-RA 1276 TrxT-RA 171..1276 1..1106 5530 100 Plus
TrxT.b 1526 TrxT.b 421..1526 1..1106 5530 100 Plus
TrxT.a 1272 TrxT.a 171..1272 1..1106 5445 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5203127..5203672 1106..561 2730 100 Minus
chrX 22417052 chrX 5203740..5204265 560..35 2615 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:41:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5310580..5311126 1107..561 2735 100 Minus
X 23542271 X 5311194..5311719 560..35 2630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5318678..5319224 1107..561 2735 100 Minus
X 23527363 X 5319292..5319817 560..35 2630 100 Minus
X 23527363 X 5319947..5319984 38..1 175 97.3 Minus
Blast to na_te.dros performed 2019-03-16 12:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6505..6640 955..1095 135 60.4 Plus

AT05857.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:08:34 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5203127..5203552 681..1106 95 == Minus
chrX 5203640..5203672 561..593 100 <- Minus
chrX 5203740..5204265 35..560 99 <- Minus
chrX 5204399..5204432 1..34 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:55:24 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 1..474 43..516 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:33:22 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 1..474 43..516 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:12:49 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 1..474 43..516 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:48 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 1..474 43..516 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-25 08:14:30 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 3..1108 1..1106 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:33:22 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 3..1108 1..1106 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:12:49 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 3..1108 1..1106 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:48 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
TrxT-RA 3..1108 1..1106 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:34 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
X 5310581..5311126 561..1106 100 <- Minus
X 5311194..5311719 35..560 100 <- Minus
X 5311853..5311886 1..34 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:34 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
X 5310581..5311126 561..1106 100 <- Minus
X 5311194..5311719 35..560 100 <- Minus
X 5311853..5311886 1..34 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:34 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
X 5310581..5311126 561..1106 100 <- Minus
X 5311194..5311719 35..560 100 <- Minus
X 5311853..5311886 1..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:12:49 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5204614..5205159 561..1106 100 <- Minus
arm_X 5205227..5205752 35..560 100 <- Minus
arm_X 5205886..5205919 1..34 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:17:40 Download gff for AT05857.complete
Subject Subject Range Query Range Percent Splice Strand
X 5318679..5319224 561..1106 100 <- Minus
X 5319292..5319817 35..560 100 <- Minus
X 5319951..5319984 1..34 100   Minus

AT05857.pep Sequence

Translation from 0 to 515

> AT05857.pep
LGEGRAPLKFKIKVMVYPVRNKDDLDQQLILAEDKLVVIDFYADWCGPCK
IIAPKLDELAQQYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNV
LELFVGCNSDKLAKLMEKHAGVYTDEAADVKAVHIDGECIVDLTAESSES
DNDNNNVNEVSAHDENAVLEH*

AT05857.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\TrxT-PA 177 GF20950-PA 1..107 15..121 473 83.2 Plus
Dana\Trx-2-PA 106 GF22780-PA 1..98 15..112 335 63.3 Plus
Dana\GF24615-PA 119 GF24615-PA 9..110 35..137 254 42.7 Plus
Dana\GF11737-PA 138 GF11737-PA 29..133 16..116 192 34 Plus
Dana\GF23991-PA 287 GF23991-PA 6..114 19..128 174 31.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\TrxT-PA 149 GG18503-PA 1..149 15..171 492 69.4 Plus
Dere\Trx-2-PA 106 GG10043-PA 1..98 15..112 324 59.2 Plus
Dere\dhd-PA 107 GG18749-PA 4..103 19..118 257 45 Plus
Dere\GG15694-PA 135 GG15694-PA 30..114 37..121 253 51.8 Plus
Dere\GG21998-PA 145 GG21998-PA 28..133 13..118 202 36.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\Trx-2-PA 106 GH10676-PA 1..104 15..118 348 59.6 Plus
Dgri\TrxT-PA 166 GH24365-PA 1..106 15..120 348 57.5 Plus
Dgri\GH14756-PA 133 GH14756-PA 5..116 6..118 266 43.4 Plus
Dgri\dhd-PA 106 GH24609-PA 4..105 19..120 259 44.1 Plus
Dgri\GH15527-PA 287 GH15527-PA 6..115 19..129 185 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
TrxT-PB 157 CG3315-PB 1..157 15..171 817 100 Plus
TrxT-PA 157 CG3315-PA 1..157 15..171 817 100 Plus
Trx-2-PA 106 CG31884-PA 1..103 15..117 324 59.2 Plus
Trx-2-PB 106 CG31884-PB 1..103 15..117 324 59.2 Plus
CG13473-PA 139 CG13473-PA 27..118 34..125 253 48.9 Plus
dhd-PB 107 CG4193-PB 4..103 19..118 251 46 Plus
dhd-PA 107 CG4193-PA 4..103 19..118 251 46 Plus
CG8517-PA 145 CG8517-PA 28..133 13..118 202 36.4 Plus
CG8993-PA 142 CG8993-PA 34..127 16..110 171 25.3 Plus
Txl-PA 287 CG5495-PA 6..107 19..121 170 33 Plus
CG3719-PA 160 CG3719-PA 53..151 19..118 150 28.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\TrxT-PA 165 GI11058-PA 1..107 15..121 406 70.1 Plus
Dmoj\Trx-2-PA 106 GI11084-PA 1..104 15..118 337 57.7 Plus
Dmoj\GI11498-PA 162 GI11498-PA 14..119 16..121 276 45.3 Plus
Dmoj\GI14472-PA 106 GI14472-PA 4..103 19..118 228 42 Plus
Dmoj\dhd-PA 106 GI11071-PA 4..103 19..118 228 42 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\TrxT-PA 167 GL14330-PA 1..111 15..125 439 72.1 Plus
Dper\GL24554-PA 141 GL24554-PA 7..120 13..124 251 40.5 Plus
Dper\dhd-PA 106 GL14288-PA 4..103 19..118 242 43 Plus
Dper\GL14110-PA 106 GL14110-PA 4..103 19..118 214 38 Plus
Dper\Trx-2-PA 106 GL18920-PA 1..49 15..67 174 64.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\TrxT-PA 167 GA17324-PA 1..111 15..125 435 71.2 Plus
Dpse\Trx-2-PA 106 GA16546-PA 1..98 15..112 340 64.3 Plus
Dpse\GA12311-PA 141 GA12311-PA 7..120 13..124 251 40.5 Plus
Dpse\dhd-PA 106 GA18018-PA 4..103 19..118 242 43 Plus
Dpse\GA18927-PA 287 GA18927-PA 1..114 14..128 174 31.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\TrxT-PA 172 GM12651-PA 1..172 15..171 566 72.2 Plus
Dsec\Trx-2-PA 106 GM17580-PA 1..98 15..112 334 63.3 Plus
Dsec\dhd-PA 107 GM12398-PA 4..103 19..118 261 46 Plus
Dsec\GM25478-PA 139 GM25478-PA 28..114 35..121 260 51.7 Plus
Dsec\GM21982-PA 145 GM21982-PA 28..133 13..118 198 36.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Trx-2-PA 106 GD23618-PA 1..98 15..112 334 63.3 Plus
Dsim\GD14500-PA 139 GD14500-PA 28..114 35..121 260 51.7 Plus
Dsim\GD11480-PA 145 GD11480-PA 28..133 13..118 198 36.4 Plus
Dsim\GD12572-PA 496 GD12572-PA 38..134 27..121 146 31.6 Plus
Dsim\GD16424-PA 159 GD16424-PA 52..137 19..106 139 30.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TrxT-PA 163 GJ16575-PA 1..105 15..119 413 71.4 Plus
Dvir\Trx-2-PA 106 GJ18315-PA 1..104 15..118 337 57.7 Plus
Dvir\GJ13693-PA 162 GJ13693-PA 14..128 16..130 265 42.6 Plus
Dvir\dhd-PA 106 GJ16851-PA 4..103 19..118 259 44 Plus
Dvir\GJ16853-PA 108 GJ16853-PA 4..101 19..116 182 36.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\TrxT-PA 174 GK25104-PA 1..107 15..121 443 77.6 Plus
Dwil\Trx-2-PA 106 GK23868-PA 1..105 15..119 326 57.1 Plus
Dwil\GK10532-PA 176 GK10532-PA 8..114 13..121 286 46.8 Plus
Dwil\dhd1-PA 108 GK25840-PA 6..107 19..120 266 47.1 Plus
Dwil\dhd3-PA 108 GK25752-PA 6..107 19..120 264 47.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TrxT-PA 157 GE16820-PA 1..157 15..171 488 65.2 Plus
Dyak\Trx-2-PA 106 GE18857-PA 1..98 15..112 277 60.2 Plus
Dyak\dhd-PA 107 GE16391-PA 4..103 19..118 261 46 Plus
Dyak\GE22025-PA 132 GE22025-PA 25..114 32..121 249 47.8 Plus
Dyak\GE12078-PA 145 GE12078-PA 28..133 13..118 201 36.4 Plus

AT05857.hyp Sequence

Translation from 0 to 515

> AT05857.hyp
LGEGRAPLKFKIKVMVYPVRNKDDLDQQLILAEDKLVVIDFYADWCGPCK
IIAPKLDELAQQYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNV
LELFVGCNSDKLAKLMEKHAGVYTDEAADVKAVHIDGECIVDLTAESSES
DNDNNNVNEVSAHDENAVLEH*

AT05857.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
TrxT-PB 157 CG3315-PB 1..157 15..171 817 100 Plus
TrxT-PA 157 CG3315-PA 1..157 15..171 817 100 Plus
Trx-2-PA 106 CG31884-PA 1..103 15..117 324 59.2 Plus
Trx-2-PB 106 CG31884-PB 1..103 15..117 324 59.2 Plus
dhd-PB 107 CG4193-PB 4..103 19..118 251 46 Plus