Clone AT05866 Report

Search the DGRC for AT05866

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:58
Well:66
Vector:pOTB7
Associated Gene/TranscriptProsbeta2R2-RA
Protein status:AT05866.pep: gold
Preliminary Size:933
Sequenced Size:1255

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12161 2002-01-01 Sim4 clustering to Release 2
CG12161 2002-01-09 Blastp of sequenced clone
CG12161 2003-01-01 Sim4 clustering to Release 3
CG12161 2008-04-29 Release 5.5 accounting
CG12161 2008-08-15 Release 5.9 accounting
CG12161 2008-12-18 5.12 accounting

Clone Sequence Records

AT05866.complete Sequence

1255 bp (1255 high quality bases) assembled on 2002-01-09

GenBank Submission: AY075170

> AT05866.complete
TCCACGCATTATGTTCAACGGCTTACCAACCTTGATGAAATACCCAGACC
GATCGCCTTTTCTGTGCGGTCCCAGCGGATTTACATTCGACAATTGTCTG
CGCAACAAACAACTAAAAGAGAATGGCCTTGAGGAGCCGAATAGCTTTAC
TACTGGCACCACTGTGGTGGGCATCGTGTTCGACGGCGGAGTAATCATAG
GCGCCGAGTCCAGGGCTACCAGCGGCGGCATAGTTTTCTCAAAGACGTGC
CGCAAAATTATTGAGCTGCAGGCCAACATTTTTGCCGCGGGAGCTGGAAC
CGCTCGGGACACGAAAGCCCTGGTGGAACTGACGCGGGCGCAGCTGGAGC
TTCACCGGATGAACACTGGGTTCCGCAAAGTGCCGGTGTGCTGTGCCAAC
CAGATGATACGGCAGCTGCTGTTCCGTTTCAACGGGAATATAGATGCCGA
CATGATCATAGGCGGCGCGGATAACACCGGAGCGCATCTCTTCTGCACCC
GCAGCGACGGCTCCACGGACACGGCGCCCTTCACGTCCATCGGCTCCGGC
TACCAGGTATCCATGTCCATCCTGGAGTCACGGTGGTCGGAGGACCTCTC
CGAGGAGTCCGCCTGCGCCCTGGCTTGCGACGCCGTGGCCGCGGGCATGA
AGAACGACCTGTGCTCCGGAGGCAAGGTCAGCCTCTGCGTCGTGCGCTGC
GACTTCTCGGTGCAATGGCCCGAGCAGCTCCCCCGCCAGGTCCCACCAAC
TCGCACCTATCGCCTGTCACCCAAGCCCGGCCGAACCACCATTCTATCCA
CCTTGGTGCATCCGGTGCTTTCGTGGCGGGGCGCCCTAGCTCTGCCCGAG
CCAGGAGGTAGCCAGGAGCCAGGGCGAGGACCAGGCACTAGTGGTGCCGC
CAGAGGGCAGGAGGCCCCGCGCAGATCCAACAGTCTGGACGAGCCGGAGG
CCAAAAGAAAGAAACGCGGAGGGAGATAGGACCCGGCTTGGGTGATCCTC
AATATCCTTACCACAAATTTCTTGATTGGTCGTAAGCGTTTAGTGAGTTA
CCGTGATTTCAAACTTTCCATCTGGAAATTGAAGCTTGTTGCGTTATCTT
GTGCAAATTACACATTTTTTGTTTCGAGCACGACCTTCCACCAGGAGGAA
AAGAGCTCTGTTACCCGGATATTTGTACGTAGATGGATTAAATCAAATTA
AACCAAATTATTTAAAATCCAAATAAACCAAATTATCAAAAAAAAAAAAA
AAAAA

AT05866.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2R2-RA 1405 Prosbeta2R2-RA 94..1336 1..1243 6200 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1043415..1044369 1237..283 4745 99.8 Minus
chr3R 27901430 chr3R 1044435..1044615 282..102 890 99.4 Minus
chr3R 27901430 chr3R 1045009..1045110 102..1 510 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:41:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5217745..5218705 1243..283 4790 99.9 Minus
3R 32079331 3R 5218771..5218951 282..102 905 100 Minus
3R 32079331 3R 5219345..5219446 102..1 510 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4958576..4959536 1243..283 4790 99.8 Minus
3R 31820162 3R 4959602..4959782 282..102 905 100 Minus
3R 31820162 3R 4960176..4960277 102..1 510 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:58:18 has no hits.

AT05866.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:59:12 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1043472..1044369 283..1180 99 <- Minus
chr3R 1044435..1044614 103..282 99 <- Minus
chr3R 1045009..1045110 1..102 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:53:54 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
CG12161-RA 1..969 11..979 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:54:28 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R2-RA 1..969 11..979 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:47:23 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R2-RA 1..969 11..979 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:19:28 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
CG12161-RA 1..969 11..979 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:55:58 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R2-RA 1..969 11..979 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:17:53 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
CG12161-RA 1..1237 1..1237 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:54:28 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R2-RA 1..1237 1..1237 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:23 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R2-RA 1..1237 1..1237 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:19:28 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
CG12161-RA 1..1237 1..1237 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:55:58 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2R2-RA 83..1319 1..1237 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:12 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5217751..5218705 283..1237 99 <- Minus
3R 5218771..5218950 103..282 100 <- Minus
3R 5219345..5219446 1..102 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:12 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5217751..5218705 283..1237 99 <- Minus
3R 5218771..5218950 103..282 100 <- Minus
3R 5219345..5219446 1..102 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:59:12 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5217751..5218705 283..1237 99 <- Minus
3R 5218771..5218950 103..282 100 <- Minus
3R 5219345..5219446 1..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:23 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1043473..1044427 283..1237 99 <- Minus
arm_3R 1044493..1044672 103..282 100 <- Minus
arm_3R 1045067..1045168 1..102 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:53:50 Download gff for AT05866.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4958582..4959536 283..1237 99 <- Minus
3R 4959602..4959781 103..282 100 <- Minus
3R 4960176..4960277 1..102 100   Minus

AT05866.hyp Sequence

Translation from 1 to 978

> AT05866.hyp
PRIMFNGLPTLMKYPDRSPFLCGPSGFTFDNCLRNKQLKENGLEEPNSFT
TGTTVVGIVFDGGVIIGAESRATSGGIVFSKTCRKIIELQANIFAAGAGT
ARDTKALVELTRAQLELHRMNTGFRKVPVCCANQMIRQLLFRFNGNIDAD
MIIGGADNTGAHLFCTRSDGSTDTAPFTSIGSGYQVSMSILESRWSEDLS
EESACALACDAVAAGMKNDLCSGGKVSLCVVRCDFSVQWPEQLPRQVPPT
RTYRLSPKPGRTTILSTLVHPVLSWRGALALPEPGGSQEPGRGPGTSGAA
RGQEAPRRSNSLDEPEAKRKKRGGR*

AT05866.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 05:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2R2-PA 322 CG12161-PA 1..322 4..325 1693 100 Plus
Prosbeta2-PA 272 CG3329-PA 12..268 25..282 533 43.7 Plus
Prosbeta2R1-PA 307 CG18341-PA 21..264 25..269 516 43.3 Plus
Prosbeta5-PA 282 CG12323-PA 47..255 29..234 210 27.6 Plus
Prosbeta5-PB 282 CG12323-PB 47..255 29..234 210 27.6 Plus

AT05866.pep Sequence

Translation from 10 to 978

> AT05866.pep
MFNGLPTLMKYPDRSPFLCGPSGFTFDNCLRNKQLKENGLEEPNSFTTGT
TVVGIVFDGGVIIGAESRATSGGIVFSKTCRKIIELQANIFAAGAGTARD
TKALVELTRAQLELHRMNTGFRKVPVCCANQMIRQLLFRFNGNIDADMII
GGADNTGAHLFCTRSDGSTDTAPFTSIGSGYQVSMSILESRWSEDLSEES
ACALACDAVAAGMKNDLCSGGKVSLCVVRCDFSVQWPEQLPRQVPPTRTY
RLSPKPGRTTILSTLVHPVLSWRGALALPEPGGSQEPGRGPGTSGAARGQ
EAPRRSNSLDEPEAKRKKRGGR*

AT05866.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20928-PA 1093 GF20928-PA 1..269 1..269 679 48.7 Plus
Dana\GF23798-PA 272 GF23798-PA 13..268 23..279 506 43.8 Plus
Dana\GF21212-PA 322 GF21212-PA 24..228 23..228 497 44.7 Plus
Dana\GF13303-PA 314 GF13303-PA 67..247 45..225 212 32.2 Plus
Dana\GF13778-PA 284 GF13778-PA 47..247 26..223 204 27.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11178-PA 322 GG11178-PA 1..316 1..318 1149 71.7 Plus
Dere\GG15711-PA 272 GG15711-PA 12..235 22..257 506 46.2 Plus
Dere\GG18789-PA 307 GG18789-PA 22..226 23..228 500 45.6 Plus
Dere\GG20051-PA 390 GG20051-PA 68..250 46..228 218 32.4 Plus
Dere\GG20151-PA 282 GG20151-PA 47..255 26..231 208 28.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16666-PA 272 GH16666-PA 12..268 22..279 530 43 Plus
Dgri\GH12772-PA 300 GH12772-PA 19..222 24..228 478 45.9 Plus
Dgri\GH17051-PA 299 GH17051-PA 27..219 52..244 334 35.2 Plus
Dgri\GH23050-PA 315 GH23050-PA 71..247 49..225 213 32 Plus
Dgri\GH14538-PA 275 GH14538-PA 56..239 49..231 200 29.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2R2-PA 322 CG12161-PA 1..322 1..322 1693 100 Plus
Prosbeta2-PA 272 CG3329-PA 12..268 22..279 533 43.7 Plus
Prosbeta2R1-PA 307 CG18341-PA 21..264 22..266 516 43.3 Plus
Prosbeta5-PA 282 CG12323-PA 47..255 26..231 210 27.6 Plus
Prosbeta5-PB 282 CG12323-PB 47..255 26..231 210 27.6 Plus
Prosbeta5R1-PA 315 CG9868-PA 68..247 46..225 210 32 Plus
Prosbeta5R2-PB 279 CG31742-PB 52..247 31..225 201 31 Plus
Prosbeta5R2-PA 279 CG31742-PA 52..247 31..225 201 31 Plus
Prosbeta1-PA 224 CG8392-PA 13..197 47..231 186 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11352-PA 270 GI11352-PA 12..235 22..257 560 46.6 Plus
Dmoj\GI15360-PA 313 GI15360-PA 19..225 24..231 478 44.7 Plus
Dmoj\GI12054-PA 322 GI12054-PA 16..320 23..319 455 35.5 Plus
Dmoj\GI21121-PA 314 GI21121-PA 68..247 46..225 223 32.6 Plus
Dmoj\GI10892-PA 322 GI10892-PA 59..253 32..229 220 28.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24711-PA 272 GL24711-PA 12..235 22..257 521 46.6 Plus
Dper\GL21838-PA 312 GL21838-PA 1..260 1..259 494 39.7 Plus
Dper\GL15166-PA 327 GL15166-PA 18..226 20..228 486 45.7 Plus
Dper\GL22004-PA 298 GL22004-PA 1..254 8..259 479 40.8 Plus
Dper\GL13291-PA 237 GL13291-PA 62..216 48..235 200 33.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17382-PA 272 GA17382-PA 12..235 22..257 519 46.6 Plus
Dpse\GA26418-PA 312 GA26418-PA 1..268 1..269 497 39.3 Plus
Dpse\GA14896-PA 327 GA14896-PA 18..226 20..228 486 45.7 Plus
Dpse\GA27343-PA 251 GA27343-PA 7..250 8..248 481 42.4 Plus
Dpse\GA11556-PA 279 GA11556-PA 70..247 46..223 197 29.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10658-PA 322 GM10658-PA 1..322 1..322 1499 87.3 Plus
Dsec\GM12440-PA 307 GM12440-PA 16..226 17..228 520 47.6 Plus
Dsec\GM25498-PA 272 GM25498-PA 12..268 22..279 513 43.7 Plus
Dsec\GM21240-PA 282 GM21240-PA 47..279 26..243 220 27.4 Plus
Dsec\GM15565-PA 315 GM15565-PA 68..251 46..229 212 32.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19639-PA 322 GD19639-PA 1..322 1..322 1511 88.2 Plus
Dsim\GD16756-PA 307 GD16756-PA 16..226 17..228 516 47.6 Plus
Dsim\GD14518-PA 272 GD14518-PA 12..268 22..279 514 43.7 Plus
Dsim\GD10758-PA 282 GD10758-PA 47..279 26..243 220 27.4 Plus
Dsim\GD24120-PA 279 GD24120-PA 57..247 36..225 188 30.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11606-PA 270 GJ11606-PA 10..233 22..257 521 45.8 Plus
Dvir\GJ16628-PA 304 GJ16628-PA 18..222 23..228 482 45.1 Plus
Dvir\GJ13326-PA 328 GJ13326-PA 16..228 23..235 467 43.2 Plus
Dvir\GJ20967-PA 312 GJ20967-PA 71..247 49..225 206 30.9 Plus
Dvir\GJ16567-PA 328 GJ16567-PA 69..251 47..229 202 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18404-PA 359 GK18404-PA 1..239 1..239 577 45.2 Plus
Dwil\GK10550-PA 272 GK10550-PA 12..255 22..266 549 45.6 Plus
Dwil\GK25153-PA 353 GK25153-PA 24..231 23..230 517 45.2 Plus
Dwil\GK18059-PA 311 GK18059-PA 66..249 45..228 211 30.8 Plus
Dwil\GK19557-PA 362 GK19557-PA 67..250 45..228 211 30.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25306-PA 324 GE25306-PA 1..320 1..322 1183 71.4 Plus
Dyak\GE16434-PA 315 GE16434-PA 16..294 17..293 516 40 Plus
Dyak\GE22042-PA 272 GE22042-PA 12..259 22..270 508 44.4 Plus
Dyak\GE11586-PA 315 GE11586-PA 67..247 45..225 217 33.3 Plus
Dyak\Prosbeta5-PA 282 GE12841-PA 47..255 26..231 209 28.1 Plus