BDGP Sequence Production Resources |
Search the DGRC for AT06280
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 62 |
Well: | 80 |
Vector: | pOTB7 |
Associated Gene/Transcript | CG42675-RD |
Protein status: | AT06280.pep: gold |
Sequenced Size: | 650 |
Gene | Date | Evidence |
---|---|---|
CG10999-RC | 2009-06-22 | Replacement based on scoring |
650 bp assembled on 2009-07-28
GenBank Submission: BT088966.1
> AT06280.complete TTTTAAATGTCTGTTTCCAACAAGGCGGAACCCAAATCACCAGTTAAAAA GGTCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTTTATGCC GCTACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGGAG GTGTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCGATGCCTCCAA GCAGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATGAAGTCGAAGG GCAATCGCAACCGTTCAACTTACAGTAGTGCTGCCCAGCAGAAGGGTCTG ACCACTGGAGTGAAGAAGAACAACTGGCGTAAGAAGCACGAGGACTTCAT TCAGTCGATTAGAGCGGCCAAGCAGGTGAAGGCGCACTTGGCGCGCGGCG GCAAGTTGAGCGACCTGCCACCACCGCCACCTTCGGAGAATCCAGACTAT GTCCAGTGTCCCCACTGTGGTCGCCGATTCAACGAACAGGCTGCGGAGCG TCATATCCCCAAGTGCGTTAACATGGTGCACAACAAGCCCCGTAACGGTC CGCCGGCCAAGAGGCGTTGAGTGGTGATTGGGAATAGATATTCGCCCATT CTTTTACTTGTGATAAAGAAGTTTTATGATTGAAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1643775..1643834 | 1..60 | 100 | -> | Plus |
chr3R | 1643896..1644467 | 61..632 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10999-RC | 1..564 | 7..570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42675-RD | 1..564 | 7..570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42675-RD | 1..564 | 7..570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42675-RD | 1..564 | 7..570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10999-RC | 13..644 | 1..632 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42675-RD | 13..644 | 1..632 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42675-RD | 13..644 | 1..632 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42675-RD | 13..644 | 1..632 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5818128..5818187 | 1..60 | 100 | -> | Plus |
3R | 5818249..5818820 | 61..632 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5818128..5818187 | 1..60 | 100 | -> | Plus |
3R | 5818249..5818820 | 61..632 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5818128..5818187 | 1..60 | 100 | -> | Plus |
3R | 5818249..5818820 | 61..632 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1643850..1643909 | 1..60 | 100 | -> | Plus |
arm_3R | 1643971..1644542 | 61..632 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5559080..5559651 | 61..632 | 100 | Plus | |
3R | 5558959..5559018 | 1..60 | 100 | -> | Plus |
Translation from 6 to 569
> AT06280.hyp MSVSNKAEPKSPVKKVNMDTTTAIPEGTALCRYCGRHFNTDRLAKHEEVC QRMLTTKRKIFDASKQRIEGTEAAAFNMKSKGNRNRSTYSSAAQQKGLTT GVKKNNWRKKHEDFIQSIRAAKQVKAHLARGGKLSDLPPPPPSENPDYVQ CPHCGRRFNEQAAERHIPKCVNMVHNKPRNGPPAKRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42675-PD | 187 | CG10999-PC | 1..187 | 1..187 | 1004 | 100 | Plus |
CG42675-PF | 383 | CG42675-PF | 202..383 | 6..187 | 978 | 99.5 | Plus |
CG42675-PC | 383 | CG10999-PB | 202..383 | 6..187 | 978 | 99.5 | Plus |
CG42675-PB | 383 | CG10999-PA | 202..383 | 6..187 | 978 | 99.5 | Plus |
CG42675-PE | 412 | CG42675-PE | 231..412 | 6..187 | 978 | 99.5 | Plus |
Translation from 6 to 569
> AT06280.pep MSVSNKAEPKSPVKKVNMDTTTAIPEGTALCRYCGRHFNTDRLAKHEEVC QRMLTTKRKIFDASKQRIEGTEAAAFNMKSKGNRNRSTYSSAAQQKGLTT GVKKNNWRKKHEDFIQSIRAAKQVKAHLARGGKLSDLPPPPPSENPDYVQ CPHCGRRFNEQAAERHIPKCVNMVHNKPRNGPPAKRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16356-PA | 389 | GF16356-PA | 204..388 | 6..187 | 700 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13059-PA | 382 | GG13059-PA | 201..382 | 6..187 | 878 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13179-PA | 380 | GH13179-PA | 195..373 | 5..183 | 671 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42675-PD | 187 | CG10999-PC | 1..187 | 1..187 | 1004 | 100 | Plus |
CG42675-PF | 383 | CG42675-PF | 202..383 | 6..187 | 978 | 99.5 | Plus |
CG42675-PC | 383 | CG10999-PB | 202..383 | 6..187 | 978 | 99.5 | Plus |
CG42675-PB | 383 | CG10999-PA | 202..383 | 6..187 | 978 | 99.5 | Plus |
CG42675-PE | 412 | CG42675-PE | 231..412 | 6..187 | 978 | 99.5 | Plus |
CG42675-PG | 427 | CG42675-PG | 246..427 | 6..187 | 978 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22365-PA | 424 | GI22365-PA | 237..417 | 6..183 | 692 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24325-PA | 466 | GL24325-PA | 283..460 | 6..182 | 666 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26574-PA | 380 | GA26574-PA | 197..374 | 6..182 | 669 | 74.4 | Plus |
Dpse\GA26574-PB | 423 | GA26574-PB | 240..417 | 6..182 | 668 | 74.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10844-PA | 383 | GM10844-PA | 202..383 | 6..187 | 978 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19826-PA | 455 | GD19826-PA | 271..455 | 3..187 | 936 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24399-PA | 385 | GJ24399-PA | 203..374 | 9..179 | 676 | 73 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22541-PA | 461 | GK22541-PA | 277..456 | 6..183 | 653 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10169-PA | 378 | GE10169-PA | 194..378 | 3..187 | 877 | 90.8 | Plus |