Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT06841.complete Sequence
1816 bp assembled on 2011-11-03
GenBank Submission: BT132746.1
> AT06841.complete
GCGAACACACTTTCGCTAGGGAACGTTTTGATCACCGAAATAAGGGAAAA
CCCATGTTGAAAACATTGATATAATATTTCACGGATGTCGAACTAGTTAA
CCAGGTTAAATTCAGTCAGTCTTGCGTAAATTTATAAAGGCCACGATGGC
CAGCCGCAATGTGCAAGCAACTCCATCCCAGGAAGAGCTGAAGCGGACTG
AGAACAACAAGAATGTGAAAAACTCCGAAGAATGTCAATCAATGGAAAAC
GATGTGGACGCGGTTGTCCCATCTTCGTCGGAGAGTGAGCTGCGGCCTCG
CAGTTCGGGAGTTAGGCCCACTAAAATTCCGGCTCCACTTTTCTTGGGAC
CCAGTGCCAGCAGCCGGATCTACAGTTCACTGATGCCCGAGAGAAAGCGA
CGCTCCTCCATGGAAAGTCAACAGATGGCCGACGATTCTGGCATCAATTT
GGATTGCTCCACGGACGAGCAGCAGACTACGCTGTCGGCCAGACCGAGTC
CAATGCTGCAGCCGATGCTCGACAGGATTCCGGACACTAGCAGCGAGTTG
GAGCTCCGACTGGCAGAGGAGCAGACTCTCAAGGAACTTCAACGCGTCGT
CGCCGAAATGGAGGCTGATGTGGCTTTTAATAATTTAGATATGCAAAATC
TACTGCCCGATGATATTGACCAGGATACACAGGTGCAATATGACGCCACT
GATGTGGATACACAGTTGCAAAATGAAGCCTCTGATGTGGAGAATGGTGC
CGAGTCTTCCGGACTAGATATGGAACAGCTGACAGGAAACGATATTCAGC
AGGAAACACTTCCTGAAACACAACCCGAAGAACTTATACCAGGAAATGTA
CAGATGGTGGAAAAAGAAATTGCACCGAAAGGGGAATTTCCAGAAATAAA
GGAAACTGCCGTGGAAATAGAATCTTTAAAGGAATTCGAAATTGTCCAGC
ATTTGGGCGAAGAGCCAATAGATGAACACACAGAGATCGTCCAAGAGACC
CCGCAAGATCCTACAGACGTAGAATCCGAGAAATCTGTACCCGAATCGGA
TATGGAGGAACTCGAAACGTTAATTAATGAAAGTAGCGAGTCCGAAGAGG
ACAGGCTTGTTCGTGAACAATTCGAGAAATACCCTGAAACATTGGAGCCC
ATGTTTCATCCAACGGCGGATGAGATTGTGTGCATTGACTCGGTCCCGGA
ACTGGCCGACCATCCCTCACTAGATGGGTCGGTGCAAAACGGTCGCGAGA
TGGTTACTTTGGATGAACTATTTGATCCGGAGTACAATGTGCACCTAATG
CGCCAACTTTTGCAGGCCAGAATAGAAGAGAATAGCGAAGTTGAAACAGC
TCCAGACTTGATAGAAAGTGAGCAAGCGGAAGAAAGGGAGACGCTGACGG
GCCCGGAGGCGGAAATCGATATGGAGGAGGAAACGGATCCGGACCTAAAA
CAAACTGGCAAGCCCTTGAGTTTCTTGAGGCGTCTAGTCAACCACAGAAT
CCTTAAGCTTAGCTATCCCATATTGTTCTGCAGCTTGGCTTTCAGTTTGG
TCTATATAATTCGCAAGGAGTAGAAGTTCACTATTCTAGAAATGCAAATT
GGATAATGCGAACTTGCGAGAGCATACGTTTCACTACGGTATATCTTAGG
AAACACTTCAAAATCGCCCGACGCATTGGCATAGTTGGGTTGCTTTAAAT
ATCTATTTTCCAAATAAATATCCACAATATCACGGCCGCACTGTTTGTAA
TTTGTATAATTTGTATGTATATTTGAATTAAAGCGCCAATTACTTAACAA
AAAAAAAAAAAAAAAA
AT06841.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 6683903..6685561 | 1798..140 | 8235 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 6685624..6685763 | 140..1 | 700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6684841..6686500 | 1799..140 | 8300 | 100 | Minus |
2L | 23513712 | 2L | 6686563..6686702 | 140..1 | 700 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6684841..6686500 | 1799..140 | 8300 | 100 | Minus |
2L | 23513712 | 2L | 6686563..6686702 | 140..1 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 11:14:09 has no hits.
AT06841.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:15:22 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 6683903..6685560 | 141..1798 | 99 | <- | Minus |
chr2L | 6685624..6685763 | 1..140 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-11-03 16:50:04 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11327-RB | 1..1428 | 146..1573 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:39:38 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11327-RA | 1..1428 | 146..1573 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:26:32 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11327-RA | 1..1428 | 146..1573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-03 16:50:04 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11327-RA | 11..1805 | 1..1795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:39:38 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11327-RA | 11..1808 | 1..1798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:32 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11327-RA | 11..1808 | 1..1798 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:22 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6684842..6686499 | 141..1798 | 100 | <- | Minus |
2L | 6686563..6686702 | 1..140 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:22 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6684842..6686499 | 141..1798 | 100 | <- | Minus |
2L | 6686563..6686702 | 1..140 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:22 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6684842..6686499 | 141..1798 | 100 | <- | Minus |
2L | 6686563..6686702 | 1..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:39:38 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6684842..6686499 | 141..1798 | 100 | <- | Minus |
arm_2L | 6686563..6686702 | 1..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:38:09 Download gff for
AT06841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6684842..6686499 | 141..1798 | 100 | <- | Minus |
2L | 6686563..6686702 | 1..140 | 100 | | Minus |
AT06841.hyp Sequence
Translation from 145 to 1572
> AT06841.hyp
MASRNVQATPSQEELKRTENNKNVKNSEECQSMENDVDAVVPSSSESELR
PRSSGVRPTKIPAPLFLGPSASSRIYSSLMPERKRRSSMESQQMADDSGI
NLDCSTDEQQTTLSARPSPMLQPMLDRIPDTSSELELRLAEEQTLKELQR
VVAEMEADVAFNNLDMQNLLPDDIDQDTQVQYDATDVDTQLQNEASDVEN
GAESSGLDMEQLTGNDIQQETLPETQPEELIPGNVQMVEKEIAPKGEFPE
IKETAVEIESLKEFEIVQHLGEEPIDEHTEIVQETPQDPTDVESEKSVPE
SDMEELETLINESSESEEDRLVREQFEKYPETLEPMFHPTADEIVCIDSV
PELADHPSLDGSVQNGREMVTLDELFDPEYNVHLMRQLLQARIEENSEVE
TAPDLIESEQAEERETLTGPEAEIDMEEETDPDLKQTGKPLSFLRRLVNH
RILKLSYPILFCSLAFSLVYIIRKE*
AT06841.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11327-PA | 475 | CG11327-PA | 1..475 | 1..475 | 2401 | 100 | Plus |
AT06841.pep Sequence
Translation from 145 to 1572
> AT06841.pep
MASRNVQATPSQEELKRTENNKNVKNSEECQSMENDVDAVVPSSSESELR
PRSSGVRPTKIPAPLFLGPSASSRIYSSLMPERKRRSSMESQQMADDSGI
NLDCSTDEQQTTLSARPSPMLQPMLDRIPDTSSELELRLAEEQTLKELQR
VVAEMEADVAFNNLDMQNLLPDDIDQDTQVQYDATDVDTQLQNEASDVEN
GAESSGLDMEQLTGNDIQQETLPETQPEELIPGNVQMVEKEIAPKGEFPE
IKETAVEIESLKEFEIVQHLGEEPIDEHTEIVQETPQDPTDVESEKSVPE
SDMEELETLINESSESEEDRLVREQFEKYPETLEPMFHPTADEIVCIDSV
PELADHPSLDGSVQNGREMVTLDELFDPEYNVHLMRQLLQARIEENSEVE
TAPDLIESEQAEERETLTGPEAEIDMEEETDPDLKQTGKPLSFLRRLVNH
RILKLSYPILFCSLAFSLVYIIRKE*
AT06841.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF14953-PA | 540 | GF14953-PA | 1..201 | 1..165 | 325 | 43.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG23595-PA | 468 | GG23595-PA | 1..468 | 1..475 | 1306 | 61.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11327-PA | 475 | CG11327-PA | 1..475 | 1..475 | 2401 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI17545-PA | 391 | GI17545-PA | 1..200 | 1..185 | 180 | 32.9 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM13957-PA | 480 | GM13957-PA | 1..480 | 1..475 | 1891 | 84.8 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD22551-PA | 478 | GD22551-PA | 1..478 | 1..475 | 1982 | 86.4 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ15497-PA | 369 | GJ15497-PA | 1..170 | 1..162 | 167 | 34.8 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK24220-PA | 518 | GK24220-PA | 1..190 | 1..163 | 167 | 31.4 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE18414-PA | 471 | GE18414-PA | 1..471 | 1..475 | 1438 | 64.8 | Plus |