Clone AT06841 Report

Search the DGRC for AT06841

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:68
Well:41
Vector:pOTB7
Associated Gene/TranscriptCG11327-RA
Protein status:AT06841.pep: gold
Sequenced Size:1816

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11327 2011-09-06 Manual selection by Sue Celniker

Clone Sequence Records

AT06841.complete Sequence

1816 bp assembled on 2011-11-03

GenBank Submission: BT132746.1

> AT06841.complete
GCGAACACACTTTCGCTAGGGAACGTTTTGATCACCGAAATAAGGGAAAA
CCCATGTTGAAAACATTGATATAATATTTCACGGATGTCGAACTAGTTAA
CCAGGTTAAATTCAGTCAGTCTTGCGTAAATTTATAAAGGCCACGATGGC
CAGCCGCAATGTGCAAGCAACTCCATCCCAGGAAGAGCTGAAGCGGACTG
AGAACAACAAGAATGTGAAAAACTCCGAAGAATGTCAATCAATGGAAAAC
GATGTGGACGCGGTTGTCCCATCTTCGTCGGAGAGTGAGCTGCGGCCTCG
CAGTTCGGGAGTTAGGCCCACTAAAATTCCGGCTCCACTTTTCTTGGGAC
CCAGTGCCAGCAGCCGGATCTACAGTTCACTGATGCCCGAGAGAAAGCGA
CGCTCCTCCATGGAAAGTCAACAGATGGCCGACGATTCTGGCATCAATTT
GGATTGCTCCACGGACGAGCAGCAGACTACGCTGTCGGCCAGACCGAGTC
CAATGCTGCAGCCGATGCTCGACAGGATTCCGGACACTAGCAGCGAGTTG
GAGCTCCGACTGGCAGAGGAGCAGACTCTCAAGGAACTTCAACGCGTCGT
CGCCGAAATGGAGGCTGATGTGGCTTTTAATAATTTAGATATGCAAAATC
TACTGCCCGATGATATTGACCAGGATACACAGGTGCAATATGACGCCACT
GATGTGGATACACAGTTGCAAAATGAAGCCTCTGATGTGGAGAATGGTGC
CGAGTCTTCCGGACTAGATATGGAACAGCTGACAGGAAACGATATTCAGC
AGGAAACACTTCCTGAAACACAACCCGAAGAACTTATACCAGGAAATGTA
CAGATGGTGGAAAAAGAAATTGCACCGAAAGGGGAATTTCCAGAAATAAA
GGAAACTGCCGTGGAAATAGAATCTTTAAAGGAATTCGAAATTGTCCAGC
ATTTGGGCGAAGAGCCAATAGATGAACACACAGAGATCGTCCAAGAGACC
CCGCAAGATCCTACAGACGTAGAATCCGAGAAATCTGTACCCGAATCGGA
TATGGAGGAACTCGAAACGTTAATTAATGAAAGTAGCGAGTCCGAAGAGG
ACAGGCTTGTTCGTGAACAATTCGAGAAATACCCTGAAACATTGGAGCCC
ATGTTTCATCCAACGGCGGATGAGATTGTGTGCATTGACTCGGTCCCGGA
ACTGGCCGACCATCCCTCACTAGATGGGTCGGTGCAAAACGGTCGCGAGA
TGGTTACTTTGGATGAACTATTTGATCCGGAGTACAATGTGCACCTAATG
CGCCAACTTTTGCAGGCCAGAATAGAAGAGAATAGCGAAGTTGAAACAGC
TCCAGACTTGATAGAAAGTGAGCAAGCGGAAGAAAGGGAGACGCTGACGG
GCCCGGAGGCGGAAATCGATATGGAGGAGGAAACGGATCCGGACCTAAAA
CAAACTGGCAAGCCCTTGAGTTTCTTGAGGCGTCTAGTCAACCACAGAAT
CCTTAAGCTTAGCTATCCCATATTGTTCTGCAGCTTGGCTTTCAGTTTGG
TCTATATAATTCGCAAGGAGTAGAAGTTCACTATTCTAGAAATGCAAATT
GGATAATGCGAACTTGCGAGAGCATACGTTTCACTACGGTATATCTTAGG
AAACACTTCAAAATCGCCCGACGCATTGGCATAGTTGGGTTGCTTTAAAT
ATCTATTTTCCAAATAAATATCCACAATATCACGGCCGCACTGTTTGTAA
TTTGTATAATTTGTATGTATATTTGAATTAAAGCGCCAATTACTTAACAA
AAAAAAAAAAAAAAAA

AT06841.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6683903..6685561 1798..140 8235 99.8 Minus
chr2L 23010047 chr2L 6685624..6685763 140..1 700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6684841..6686500 1799..140 8300 100 Minus
2L 23513712 2L 6686563..6686702 140..1 700 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6684841..6686500 1799..140 8300 100 Minus
2L 23513712 2L 6686563..6686702 140..1 700 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:14:09 has no hits.

AT06841.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:15:22 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6683903..6685560 141..1798 99 <- Minus
chr2L 6685624..6685763 1..140 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-11-03 16:50:04 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
CG11327-RB 1..1428 146..1573 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:39:38 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
CG11327-RA 1..1428 146..1573 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:26:32 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
CG11327-RA 1..1428 146..1573 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-03 16:50:04 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
CG11327-RA 11..1805 1..1795 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:39:38 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
CG11327-RA 11..1808 1..1798 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:32 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
CG11327-RA 11..1808 1..1798 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:22 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6684842..6686499 141..1798 100 <- Minus
2L 6686563..6686702 1..140 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:22 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6684842..6686499 141..1798 100 <- Minus
2L 6686563..6686702 1..140 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:15:22 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6684842..6686499 141..1798 100 <- Minus
2L 6686563..6686702 1..140 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:39:38 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6684842..6686499 141..1798 100 <- Minus
arm_2L 6686563..6686702 1..140 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:38:09 Download gff for AT06841.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6684842..6686499 141..1798 100 <- Minus
2L 6686563..6686702 1..140 100   Minus

AT06841.hyp Sequence

Translation from 145 to 1572

> AT06841.hyp
MASRNVQATPSQEELKRTENNKNVKNSEECQSMENDVDAVVPSSSESELR
PRSSGVRPTKIPAPLFLGPSASSRIYSSLMPERKRRSSMESQQMADDSGI
NLDCSTDEQQTTLSARPSPMLQPMLDRIPDTSSELELRLAEEQTLKELQR
VVAEMEADVAFNNLDMQNLLPDDIDQDTQVQYDATDVDTQLQNEASDVEN
GAESSGLDMEQLTGNDIQQETLPETQPEELIPGNVQMVEKEIAPKGEFPE
IKETAVEIESLKEFEIVQHLGEEPIDEHTEIVQETPQDPTDVESEKSVPE
SDMEELETLINESSESEEDRLVREQFEKYPETLEPMFHPTADEIVCIDSV
PELADHPSLDGSVQNGREMVTLDELFDPEYNVHLMRQLLQARIEENSEVE
TAPDLIESEQAEERETLTGPEAEIDMEEETDPDLKQTGKPLSFLRRLVNH
RILKLSYPILFCSLAFSLVYIIRKE*

AT06841.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11327-PA 475 CG11327-PA 1..475 1..475 2401 100 Plus

AT06841.pep Sequence

Translation from 145 to 1572

> AT06841.pep
MASRNVQATPSQEELKRTENNKNVKNSEECQSMENDVDAVVPSSSESELR
PRSSGVRPTKIPAPLFLGPSASSRIYSSLMPERKRRSSMESQQMADDSGI
NLDCSTDEQQTTLSARPSPMLQPMLDRIPDTSSELELRLAEEQTLKELQR
VVAEMEADVAFNNLDMQNLLPDDIDQDTQVQYDATDVDTQLQNEASDVEN
GAESSGLDMEQLTGNDIQQETLPETQPEELIPGNVQMVEKEIAPKGEFPE
IKETAVEIESLKEFEIVQHLGEEPIDEHTEIVQETPQDPTDVESEKSVPE
SDMEELETLINESSESEEDRLVREQFEKYPETLEPMFHPTADEIVCIDSV
PELADHPSLDGSVQNGREMVTLDELFDPEYNVHLMRQLLQARIEENSEVE
TAPDLIESEQAEERETLTGPEAEIDMEEETDPDLKQTGKPLSFLRRLVNH
RILKLSYPILFCSLAFSLVYIIRKE*

AT06841.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14953-PA 540 GF14953-PA 1..201 1..165 325 43.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23595-PA 468 GG23595-PA 1..468 1..475 1306 61.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11327-PA 475 CG11327-PA 1..475 1..475 2401 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17545-PA 391 GI17545-PA 1..200 1..185 180 32.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13957-PA 480 GM13957-PA 1..480 1..475 1891 84.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22551-PA 478 GD22551-PA 1..478 1..475 1982 86.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15497-PA 369 GJ15497-PA 1..170 1..162 167 34.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24220-PA 518 GK24220-PA 1..190 1..163 167 31.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18414-PA 471 GE18414-PA 1..471 1..475 1438 64.8 Plus