Clone AT06885 Report

Search the DGRC for AT06885

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:68
Well:85
Vector:pOTB7
Associated Gene/TranscriptCG14644-RA
Protein status:AT06885.pep: gold
Preliminary Size:771
Sequenced Size:1042

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14644 2002-01-01 Sim4 clustering to Release 2
CG14644 2002-02-26 Blastp of sequenced clone
CG14644 2003-01-01 Sim4 clustering to Release 3
CG14644 2008-04-29 Release 5.5 accounting
CG14644 2008-08-15 Release 5.9 accounting
CG14644 2008-12-18 5.12 accounting

Clone Sequence Records

AT06885.complete Sequence

1042 bp (1042 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089269

> AT06885.complete
GTTGAATACACTGTCACCTTACACGATCTTCTAAATCTAATGTAATGGAC
AATAATCCGACGACCCCTGCTTTGCTTGCTCAGAGCTCCTCGGTAAACGT
GTTCCACGATGAATCACTGTTACCTCAGCGTAATGTAAAAACAAGTGAGA
ATGTTCCACCAACTTGTGCGGAGAAAACGTTGTTTGTGCTGTCCATGATT
CTGATAGTCCTTTGCCTGCCGTGGTCCCTATTCTGCTGTCTCAGGGTAAT
GTCGGAGTACGAGCGAGCGGTAATCCTGCGCCTGGGTCGCCTGCGCCCTA
AGCCCCCGAGGGGGCCAGGCGTCATCTTTCTCGTGCCCTGCATTGATGAC
CTCGCTGTTGTGGACATACGTACCAGGTCATTTGACCTACATAGACAGGA
AATCCTCACTCGTGACATGGTGACGATCAGCATCGACGGAGTGGTGTACT
ACAGCATCAAGAGCCCATTCGACGCCATGCTGCAAGTATACGATCCGGAG
GAGGCGACCGAGAAGCTAGCAATGACCACGCTGCGTAACGTGGCCGGCAC
CCACAAGCTAATGGATTTGCTCTCGTCCAAGGAGTACCTCTCCAACCAAA
TAGAGGGTATATTGTACAACTCCACAGAGCCCTGGGGCATACGCGTGGAA
CGGGTCGAGATCAAGGAGATCTTCATGCCTGATCAACTGAAGCGCGCCCT
GGCTGTGGAACAGGAGGCGATGCGTGAGGCCAAGGCCAAGGTGGCCGCGG
CGCAGGGGGAGCGAGATGCGGTAACTGCTCTGAAGGAGGCTGCCGACATA
ATGGAGACCAACCCCATAGCCCTGCAGCTACGGTACTTGCAAACACTGAA
CTCCATCTGCAATGATGACACCCGGTCCTACGTCTTTCCTTTTCCTGTAG
ACATTGTGAGGAATTTGATGAAGTAGGATTGAATTCAGAAAATGCGTTCC
GTTTTTATGTACGTTCCATATAAAAATTACTTACCTATTAAATAGAATTT
AGTTCATCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT06885.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14644-RA 1132 CG14644-RA 115..1126 1..1012 5060 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 78019..78535 661..145 2585 100 Minus
chr3R 27901430 chr3R 77615..77963 1010..662 1745 100 Minus
chr3R 27901430 chr3R 78595..78740 146..1 730 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:41:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4252298..4252814 661..145 2585 100 Minus
3R 32079331 3R 4251892..4252242 1012..662 1755 100 Minus
3R 32079331 3R 4252874..4253019 146..1 730 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 3993129..3993645 661..145 2585 100 Minus
3R 31820162 3R 3992723..3993073 1012..662 1755 100 Minus
3R 31820162 3R 3993705..3993850 146..1 730 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:28:19 has no hits.

AT06885.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:29:45 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 77615..77963 662..1010 100 <- Minus
chr3R 78019..78535 145..661 100 <- Minus
chr3R 78597..78740 1..144 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:54:21 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG14644-RA 1..882 45..926 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:42:53 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG14644-RA 1..882 45..926 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:29:41 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG14644-RA 1..882 45..926 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:21:51 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG14644-RA 1..882 45..926 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:35:21 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG14644-RA 1..882 45..926 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:50:10 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG14644-RA 25..1034 1..1010 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:42:53 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG14644-RA 25..1034 1..1010 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:29:41 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG14644-RA 25..1034 1..1010 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:21:51 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG14644-RA 25..1034 1..1010 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:35:21 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
CG14644-RA 25..1034 1..1010 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:29:45 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4251894..4252242 662..1010 100 <- Minus
3R 4252298..4252814 145..661 100 <- Minus
3R 4252876..4253019 1..144 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:29:45 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4251894..4252242 662..1010 100 <- Minus
3R 4252298..4252814 145..661 100 <- Minus
3R 4252876..4253019 1..144 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:29:45 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4251894..4252242 662..1010 100 <- Minus
3R 4252298..4252814 145..661 100 <- Minus
3R 4252876..4253019 1..144 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:29:41 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 77616..77964 662..1010 100 <- Minus
arm_3R 78020..78536 145..661 100 <- Minus
arm_3R 78598..78741 1..144 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:56:31 Download gff for AT06885.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3992725..3993073 662..1010 100 <- Minus
3R 3993129..3993645 145..661 100 <- Minus
3R 3993707..3993850 1..144 100   Minus

AT06885.hyp Sequence

Translation from 44 to 925

> AT06885.hyp
MDNNPTTPALLAQSSSVNVFHDESLLPQRNVKTSENVPPTCAEKTLFVLS
MILIVLCLPWSLFCCLRVMSEYERAVILRLGRLRPKPPRGPGVIFLVPCI
DDLAVVDIRTRSFDLHRQEILTRDMVTISIDGVVYYSIKSPFDAMLQVYD
PEEATEKLAMTTLRNVAGTHKLMDLLSSKEYLSNQIEGILYNSTEPWGIR
VERVEIKEIFMPDQLKRALAVEQEAMREAKAKVAAAQGERDAVTALKEAA
DIMETNPIALQLRYLQTLNSICNDDTRSYVFPFPVDIVRNLMK*

AT06885.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14644-PA 293 CG14644-PA 1..293 1..293 1490 100 Plus
CG14644-PB 225 CG14644-PB 1..225 69..293 1133 100 Plus
CG33253-PA 367 CG33253-PA 33..315 5..288 692 48.2 Plus
CG33253-PB 414 CG33253-PB 33..315 5..288 692 48.2 Plus
CG33253-PC 302 CG33253-PC 3..250 41..288 658 50.4 Plus

AT06885.pep Sequence

Translation from 44 to 925

> AT06885.pep
MDNNPTTPALLAQSSSVNVFHDESLLPQRNVKTSENVPPTCAEKTLFVLS
MILIVLCLPWSLFCCLRVMSEYERAVILRLGRLRPKPPRGPGVIFLVPCI
DDLAVVDIRTRSFDLHRQEILTRDMVTISIDGVVYYSIKSPFDAMLQVYD
PEEATEKLAMTTLRNVAGTHKLMDLLSSKEYLSNQIEGILYNSTEPWGIR
VERVEIKEIFMPDQLKRALAVEQEAMREAKAKVAAAQGERDAVTALKEAA
DIMETNPIALQLRYLQTLNSICNDDTRSYVFPFPVDIVRNLMK*

AT06885.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13229-PA 295 GF13229-PA 2..295 3..293 1226 78.2 Plus
Dana\GF15940-PA 378 GF15940-PA 38..322 5..288 651 48.3 Plus
Dana\GF15941-PA 353 GF15941-PA 55..313 29..288 629 48.5 Plus
Dana\GF25082-PA 695 GF25082-PA 367..619 40..293 604 49.2 Plus
Dana\GF17229-PA 456 GF17229-PA 53..314 31..293 573 45.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11730-PA 293 GG11730-PA 1..293 1..293 1488 95.6 Plus
Dere\GG19210-PA 365 GG19210-PA 33..315 5..288 646 48.2 Plus
Dere\GG19211-PA 350 GG19211-PA 52..310 29..288 618 48.1 Plus
Dere\GG18608-PA 483 GG18608-PA 41..305 27..292 606 45.1 Plus
Dere\GG15239-PA 413 GG15239-PA 79..331 40..293 601 48.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23142-PA 303 GH23142-PA 36..303 28..293 872 63.1 Plus
Dgri\GH12518-PA 349 GH12518-PA 53..319 22..288 631 49.1 Plus
Dgri\GH17310-PA 402 GH17310-PA 51..310 28..288 612 44.8 Plus
Dgri\GH15690-PA 391 GH15690-PA 52..304 40..293 602 48.8 Plus
Dgri\GH11833-PA 344 GH11833-PA 56..317 27..288 568 48.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14644-PA 293 CG14644-PA 1..293 1..293 1490 100 Plus
CG14644-PB 225 CG14644-PB 1..225 69..293 1133 100 Plus
CG33253-PA 367 CG33253-PA 33..315 5..288 692 48.2 Plus
CG33253-PB 414 CG33253-PB 33..315 5..288 692 48.2 Plus
CG33253-PC 302 CG33253-PC 3..250 41..288 658 50.4 Plus
Mec2-PA 350 CG7635-PA 52..310 29..288 658 47.7 Plus
CG42540-PH 393 CG42540-PH 47..313 29..293 639 47.8 Plus
CG42540-PD 505 CG32245-PB 144..425 9..293 637 45.6 Plus
CG42540-PC 397 CG32245-PA 65..317 40..293 634 48.8 Plus
CG42540-PB 398 CG32245-PC 66..318 40..293 634 48.8 Plus
CG42540-PK 405 CG42540-PK 73..325 40..293 634 48.8 Plus
CG42540-PI 409 CG42540-PI 77..329 40..293 634 48.8 Plus
CG42540-PJ 501 CG42540-PJ 169..421 40..293 634 48.8 Plus
CG42540-PF 506 CG42540-PF 174..426 40..293 634 48.8 Plus
CG42540-PG 517 CG42540-PG 185..437 40..293 634 48.8 Plus
CG14736-PD 455 CG14736-PD 41..305 27..292 604 44.4 Plus
CG14736-PG 473 CG14736-PG 41..305 27..292 604 44.4 Plus
CG14736-PE 473 CG14736-PE 41..305 27..292 604 44.4 Plus
CG31358-PB 474 CG31358-PB 13..276 35..292 568 44 Plus
CG31358-PA 474 CG31358-PA 13..276 35..292 568 44 Plus
CG14736-PF 335 CG14736-PF 1..185 108..292 416 44.3 Plus
Stoml2-PB 366 CG2970-PB 42..224 65..248 246 32.4 Plus
Stoml2-PA 366 CG2970-PA 42..224 65..248 246 32.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18479-PA 295 GI18479-PA 23..295 23..293 852 59.3 Plus
Dmoj\GI14311-PA 351 GI14311-PA 55..313 29..288 686 49.2 Plus
Dmoj\GI14870-PA 339 GI14870-PA 43..309 22..288 642 49.1 Plus
Dmoj\GI12741-PA 495 GI12741-PA 144..425 9..293 603 45.6 Plus
Dmoj\GI10271-PA 237 GI10271-PA 2..231 58..288 507 46.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17280-PA 310 GL17280-PA 1..310 1..293 992 62.6 Plus
Dper\GL12979-PA 354 GL12979-PA 52..314 26..288 637 49 Plus
Dper\GL12980-PA 369 GL12980-PA 69..327 29..288 618 48.1 Plus
Dper\GL22263-PA 393 GL22263-PA 71..335 27..292 610 46.2 Plus
Dper\GL17909-PA 617 GL17909-PA 261..513 40..293 602 49.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24162-PA 310 GA24162-PA 1..310 1..293 994 62.6 Plus
Dpse\GA23068-PA 354 GA23068-PA 52..314 26..288 637 49 Plus
Dpse\GA20495-PA 369 GA20495-PA 69..327 29..288 619 48.1 Plus
Dpse\GA30194-PA 553 GA30194-PA 58..318 27..288 612 46.2 Plus
Dpse\GA27434-PA 393 GA27434-PA 71..335 27..292 610 46.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10718-PA 293 GM10718-PA 1..293 1..293 1493 95.9 Plus
Dsec\GM22946-PA 363 GM22946-PA 33..315 5..288 646 48.2 Plus
Dsec\GM23997-PA 476 GM23997-PA 40..304 27..292 634 45.9 Plus
Dsec\GM22941-PA 261 GM22941-PA 2..256 33..288 607 47.3 Plus
Dsec\GM14671-PA 414 GM14671-PA 83..335 40..293 600 48.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19693-PA 293 GD19693-PA 1..293 1..293 1499 96.2 Plus
Dsim\GD17427-PA 365 GD17427-PA 33..315 5..288 646 48.2 Plus
Dsim\GD18800-PA 475 GD18800-PA 41..305 27..292 630 45.9 Plus
Dsim\GD17429-PA 350 GD17429-PA 52..310 29..288 619 47.7 Plus
Dsim\GD13852-PA 414 GD13852-PA 83..335 40..293 600 48.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21340-PA 309 GJ21340-PA 37..309 23..293 876 60.4 Plus
Dvir\GJ19367-PA 347 GJ19367-PA 57..315 29..288 684 48.8 Plus
Dvir\GJ19534-PA 352 GJ19534-PA 64..325 27..288 635 49.2 Plus
Dvir\GJ15511-PA 412 GJ15511-PA 77..329 40..293 599 48.8 Plus
Dvir\GJ11079-PA 317 GJ11079-PA 17..276 28..288 592 44.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19470-PA 296 GK19470-PA 9..296 6..293 998 64.9 Plus
Dwil\GK19468-PA 296 GK19468-PA 9..296 6..293 998 64.9 Plus
Dwil\GK25172-PA 345 GK25172-PA 55..315 27..288 647 49.2 Plus
Dwil\GK25171-PA 359 GK25171-PA 63..324 27..288 631 49.6 Plus
Dwil\GK11530-PA 428 GK11530-PA 64..329 22..288 600 45.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25367-PA 293 GE25367-PA 1..293 1..293 1518 97.6 Plus
Dyak\GE17775-PA 374 GE17775-PA 33..315 5..288 646 48.2 Plus
Dyak\GE26158-PA 491 GE26158-PA 38..302 27..292 634 46.2 Plus
Dyak\GE17776-PA 350 GE17776-PA 52..310 29..288 617 47.7 Plus
Dyak\GE21459-PA 528 GE21459-PA 194..446 40..293 602 48.8 Plus