Clone AT07234 Report

Search the DGRC for AT07234

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:72
Well:34
Vector:pOTB7
Associated Gene/TranscriptCG10761-RA
Protein status:AT07234.pep: gold
Preliminary Size:1068
Sequenced Size:1270

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10761 2002-01-01 Sim4 clustering to Release 2
CG10761 2002-01-03 Blastp of sequenced clone
CG10761 2003-01-01 Sim4 clustering to Release 3
CG10761 2008-04-29 Release 5.5 accounting
CG10761 2008-08-15 Release 5.9 accounting
CG10761 2008-12-18 5.12 accounting

Clone Sequence Records

AT07234.complete Sequence

1270 bp (1270 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075173

> AT07234.complete
GGATAATCAGGAACCTTCGAGTTTAAAGTACATATAAGCGGGTTATTTGC
AGCCGTTCAAAATTCAAGTTGCCACCTTTCCAAATTTCATTTGCTCCGCC
TGGAGATTGGATCACTGGATCTTCGGTGGTCATCGTTGCCATCGCCCAAA
ACATCACCATCACTATGAGCCGACAATTTATGCATTTACCGCTTCACAGC
CGGCTGCGCCGTTTGAGAAGCGGATTGGAACCGCCATCCGGCAATGTCGT
GGATGACAGAATGTGCTGGATTTGCCTGAGGGGCGATGAGGATCACCGCC
GAAGGGATTGGGTGCATCCGTGTCGCTGTCGCGGCACCAATAAATGGGTG
CACGAGGCCTGTCTGAGTCGCTGGATCGATGAGAAGGAGATGCTATCGCC
GGGTGCTCCCGTGACGTGCACCCAATGCCGCACGGAGTACATTATAGTGA
TGCCGCCACTATGCCGCTTCGATGCCATGCTGGAGCGACTGGACAAGGGC
TGCGATCGTATGTGTCCCAGTGTTCTGATGGGCATCCTGGCGGCCACCGT
TTACTTCTCCGCGGTGATCTACGGAGCACTCACCGTGCTCCAACTGGCCG
GCTATAGCACGGGCATGAAGCTGCTCCAAGAGGATCCCTCGCTGCTGATG
ATTGTGCTGCCATCGGTGCCGACGCTCCTACTTCTCAGCAGGCTTGTGCG
CTGGGAGGACTGCGTGATCCGTTGGCTGCGTCGGCGCAAACGTAGCGCCA
TTCCCGCCGAGCAACTGGATGCTGTGGGTCTACCCCTGCCCGGTGCTCCG
CTGAGCGATGAGTACTTCGATGAGCTGGAGCGCGAGTATCCGGCCTCGGA
TGGCCTAATTGGCGGTAACTTGGCAACGGAGCAACTTGGTCGCGCCTCCA
CCAGCTTCTGCATTGCCCTAAGTCTGCCCACCATTTCCGTGGTGCTGGGA
CAGAAGCTCTTCGGCAGGATCTACGAGGAGAACAAGTTATTGAGCATCCT
CCTGGGCGGACTGACCTTTGTGACCATCAAGGGATTGGCCAGTATCTTCC
TTAGCCAGTCGCAGTATCAACAGAGGCGCCACAGATTCGTCATGGACTAC
ACTCCTCGCAATCGTATCAACTATCAGTCCCGGTAGCGCTGAAGGCATCT
GGAATCCATCAGTTACAACAAAGATCCACTGATCCTTATTTAGTTTTTTT
TTTATAGTATGGCCAAAAATCAATAAATTAGTATAATTTGCCAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

AT07234.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10761-RA 1258 CG10761-RA 1..1156 1..1156 5750 99.8 Plus
CG10761-RA 1258 CG10761-RA 1164..1256 1154..1245 395 96.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8053388..8054629 1242..1 6180 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:41:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8161537..8162792 1245..1 5985 98.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8169735..8170890 1156..1 5750 99.8 Minus
X 23527363 X 8169635..8169727 1245..1154 395 96.7 Minus
Blast to na_te.dros performed on 2019-03-15 11:26:53 has no hits.

AT07234.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:27:53 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8053388..8054629 1..1242 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:54:37 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10761-RA 1..972 165..1136 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:47 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10761-RA 1..972 165..1136 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:29:17 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10761-RA 1..972 165..1136 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:31 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10761-RA 1..972 165..1136 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:34:31 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10761-RA 1..972 165..1136 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:22:29 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10761-RA 1..1253 1..1242 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:47 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10761-RA 1..1253 1..1242 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:29:17 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10761-RA 1..1253 1..1242 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:32 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10761-RA 1..1253 1..1242 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:34:31 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10761-RA 1..1253 1..1242 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:27:53 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
X 8161540..8162792 1..1242 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:27:53 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
X 8161540..8162792 1..1242 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:27:53 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
X 8161540..8162792 1..1242 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:29:17 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8055573..8056825 1..1242 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:30 Download gff for AT07234.complete
Subject Subject Range Query Range Percent Splice Strand
X 8169638..8170890 1..1242 98   Minus

AT07234.hyp Sequence

Translation from 164 to 1135

> AT07234.hyp
MSRQFMHLPLHSRLRRLRSGLEPPSGNVVDDRMCWICLRGDEDHRRRDWV
HPCRCRGTNKWVHEACLSRWIDEKEMLSPGAPVTCTQCRTEYIIVMPPLC
RFDAMLERLDKGCDRMCPSVLMGILAATVYFSAVIYGALTVLQLAGYSTG
MKLLQEDPSLLMIVLPSVPTLLLLSRLVRWEDCVIRWLRRRKRSAIPAEQ
LDAVGLPLPGAPLSDEYFDELEREYPASDGLIGGNLATEQLGRASTSFCI
ALSLPTISVVLGQKLFGRIYEENKLLSILLGGLTFVTIKGLASIFLSQSQ
YQQRRHRFVMDYTPRNRINYQSR*

AT07234.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10761-PA 323 CG10761-PA 1..323 1..323 1704 100 Plus
CG9855-PC 382 CG9855-PC 62..341 31..323 570 40.7 Plus
CG9855-PA 382 CG9855-PA 62..341 31..323 570 40.7 Plus
CG16781-PA 383 CG16781-PA 34..325 27..316 484 35.8 Plus
CG16781-PB 386 CG16781-PB 37..328 27..316 484 35.8 Plus

AT07234.pep Sequence

Translation from 164 to 1135

> AT07234.pep
MSRQFMHLPLHSRLRRLRSGLEPPSGNVVDDRMCWICLRGDEDHRRRDWV
HPCRCRGTNKWVHEACLSRWIDEKEMLSPGAPVTCTQCRTEYIIVMPPLC
RFDAMLERLDKGCDRMCPSVLMGILAATVYFSAVIYGALTVLQLAGYSTG
MKLLQEDPSLLMIVLPSVPTLLLLSRLVRWEDCVIRWLRRRKRSAIPAEQ
LDAVGLPLPGAPLSDEYFDELEREYPASDGLIGGNLATEQLGRASTSFCI
ALSLPTISVVLGQKLFGRIYEENKLLSILLGGLTFVTIKGLASIFLSQSQ
YQQRRHRFVMDYTPRNRINYQSR*

AT07234.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20973-PA 346 GF20973-PA 25..327 11..316 1205 70.6 Plus
Dana\GF16812-PA 403 GF16812-PA 75..354 31..323 591 41.9 Plus
Dana\GF21788-PA 469 GF21788-PA 73..349 31..316 499 38.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17980-PA 325 GG17980-PA 1..319 1..319 1388 79.9 Plus
Dere\GG11621-PA 388 GG11621-PA 69..348 31..323 578 42.4 Plus
Dere\GG18582-PA 384 GG18582-PA 22..331 3..316 545 38.8 Plus
Dere\GG11538-PA 306 GG11538-PA 32..299 31..316 373 34.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24859-PA 290 GH24859-PA 4..290 30..314 783 50.9 Plus
Dgri\GH14233-PA 413 GH14233-PA 89..366 31..320 578 41.4 Plus
Dgri\GH12186-PA 303 GH12186-PA 16..286 30..316 498 36.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10761-PA 323 CG10761-PA 1..323 1..323 1704 100 Plus
CG9855-PC 382 CG9855-PC 62..341 31..323 570 40.7 Plus
CG9855-PA 382 CG9855-PA 62..341 31..323 570 40.7 Plus
CG16781-PA 383 CG16781-PA 34..325 27..316 484 35.8 Plus
CG16781-PB 386 CG16781-PB 37..328 27..316 484 35.8 Plus
CG17991-PA 294 CG17991-PA 20..287 31..316 434 35.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14409-PA 305 GI14409-PA 2..297 17..316 868 54.3 Plus
Dmoj\GI22140-PA 421 GI22140-PA 76..360 27..323 602 42.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20188-PA 337 GL20188-PA 30..324 30..322 754 50.2 Plus
Dper\GL13782-PA 311 GL13782-PA 17..307 26..313 688 49.5 Plus
Dper\GL22354-PA 389 GL22354-PA 79..352 31..323 552 40.3 Plus
Dper\GL13124-PA 345 GL13124-PA 1..145 6..145 316 41.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10551-PA 339 GA10551-PA 32..326 30..322 748 49.2 Plus
Dpse\GA26791-PA 311 GA26791-PA 17..307 26..313 682 49.5 Plus
Dpse\GA22076-PB 398 GA22076-PB 72..359 20..323 574 40.5 Plus
Dpse\GA23069-PA 404 GA23069-PA 44..321 27..316 439 37.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11202-PA 325 GM11202-PA 1..323 1..323 1526 91.6 Plus
Dsec\GM10705-PA 382 GM10705-PA 62..341 31..323 575 42 Plus
Dsec\GM12725-PA 388 GM12725-PA 38..321 31..316 441 33.8 Plus
Dsec\GM10380-PA 285 GM10380-PA 20..280 31..318 352 32.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24575-PA 320 GD24575-PA 1..320 1..320 1496 90.3 Plus
Dsim\GD19682-PA 382 GD19682-PA 62..341 31..323 574 42 Plus
Dsim\GD16331-PA 388 GD16331-PA 38..321 31..316 445 34.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18757-PA 307 GJ18757-PA 16..299 30..316 933 59.9 Plus
Dvir\GJ24258-PA 420 GJ24258-PA 65..351 25..323 600 42.1 Plus
Dvir\GJ19393-PA 367 GJ19393-PA 11..296 20..320 513 37.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19914-PA 329 GK19914-PA 17..313 11..316 964 61.1 Plus
Dwil\GK13759-PA 401 GK13759-PA 72..353 31..323 576 40.6 Plus
Dwil\GK10150-PA 387 GK10150-PA 17..310 20..316 492 35.5 Plus
Dwil\GK10149-PA 307 GK10149-PA 26..299 31..313 478 37.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17474-PA 327 GE17474-PA 1..325 1..323 1325 76.3 Plus
Dyak\GE25355-PA 374 GE25355-PA 53..332 31..323 579 42.4 Plus
Dyak\GE16894-PA 387 GE16894-PA 31..315 22..316 455 37.5 Plus