AT07308.complete Sequence
1607 bp assembled on 2009-04-13
GenBank Submission: BT082015.1
> AT07308.complete
AAATTACATTGGCGACACAATGAAAACTCTTGAATTTTTGTGTTTGTCGA
CAGTAAAATGTCGAGTATTTGACTTCAAACCGAACTAAATTATAGAGCGT
AGTGGAGTGTCAAAGTTTCCTATGTCCCTCCGTTTATTTATCCATAGTCG
CGCATTCGGTGCGCCAGAAAATCGACCAGGTGGTGATCAGCCTGATATCC
GGAGCAGCGGCGGGGGCGCTGGCCAAGACGGTCATCGCCCCGCTGGACCG
CACAAAGATCAACTTCCAGATCCGCAACGATGTGCCCTTCTCGTTTCGAG
CCTCGCTGCGCTACCTGCAAAACACCTATGCCAACGAGGGCGTTTTGGCC
CTGTGGCGGGGGAACTCGGCCACGATGGCCAGAATCGTGCCCTACGCAGC
CATACAGTTCACGGCCCACGAGCAGTGGCGTCGCATCCTGCACGTCGACA
AGGACGGCACCAACACGAAAGGTCGTCGGTTTTTGGCTGGCTCCCTGGCG
GGAATCACCTCACAGTCGCTGACGTATCCTCTGGACCTGGCACGCGCCCG
CATGGCCGTCACGGATCGGTATACTGGCTATCGGACGCTGCGACAAGTCT
TCACCAAGATCTGGGTGGAGGAGGGTCCGCGGACGCTGTTCCGCGGCTAC
TGGGCGACCGTTCTCGGCGTGATTCCCTATGCGGGCACCTCCTTCTTCAC
CTACGAGACTCTTAAGCGGGAATACTATGAAGTGGTCGGCAACAATAAAC
CCAATACTCTAGTCTCGCTGGCCTTCGGTGCTGCGGCTGGTGCCGCCGGG
CAAACGGCCAGCTATCCATTGGACATTGTGCGGCGAAGAATGCAGACAAT
GCGGGTGAACACGGCTGGCGGAGATCGGTACCCAACCATCCTGGAGACTC
TCGTCAAGATCTATCGTGAGGAGGGCGTCAAGAACGGTTTCTACAAGGGA
CTTAGCATGAACTGGATCAAGGGACCCATCGCCGTGGGCATCAGCTTCTC
CACCTACGATCTGATCAAGGCGTGGCTCACGGAGCTGGCCAACTTGAGAC
GGGTTGAGAAATAGCCCAGCTCCCTGCCCCTGCCACTCGTCACCCATAAA
CACCACACCAAAAACGCACTGCTTTGATCTTAAGTCTCGCGATCGATGGA
TGAGCTGAGGAAATAGAAGTGAAGCACCGACATGCTCTAATTGTTAGATA
TTTTTTAGCTGTTAGTTGTGAGGGAGAGAAGCGATGAAGTGAAGACACCC
GAAAGCGCTTAACTTTGTTATTAACCGTAATTGATTTATTATCGCCGTAA
GCCGAAAGTATATCAGCCAATAAACTGTCTGAATAATGACTCGCCTGGCA
CATACTGCTCCCCAGGACCTCGTATTCAATGGTGTTGCTTTGACAATAAC
ACTCCTAGATTAATGATTACGATTTACCCGAACATTTTGTATATTGTGTA
TTGCCAACTCAATGTCAAGGCGCTGCGACTGTTAAAATAGTCATGAATTT
GAGGGTGTTCACACCAGCATATACTATGTAATTCTTGTATGTTAGTGTGT
TTTTATTATTAAAATTTACAAAATTGTTTAACTGATCGAAAAAAAAAAAA
AAAAAAA
AT07308.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
att-ORFB-RA | 1609 | att-ORFB-RA | 34..1609 | 1..1576 | 7880 | 100 | Plus |
att-ORFB.a | 1489 | att-ORFB.a | 1..1489 | 3..1491 | 7445 | 100 | Plus |
att-ORFA-RA | 2086 | att-ORFA-RA | 634..2063 | 160..1589 | 7150 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 16376299..16376971 | 1588..916 | 3365 | 100 | Minus |
chr3R | 27901430 | chr3R | 16377810..16378118 | 463..155 | 1530 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 16377484..16377749 | 729..464 | 1330 | 100 | Minus |
chr3R | 27901430 | chr3R | 16377041..16377228 | 916..729 | 940 | 100 | Minus |
chr3R | 27901430 | chr3R | 16378167..16378325 | 159..1 | 795 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:41:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20552384..20553057 | 1589..916 | 3370 | 100 | Minus |
3R | 32079331 | 3R | 20553896..20554204 | 463..155 | 1530 | 99.7 | Minus |
3R | 32079331 | 3R | 20553570..20553835 | 729..464 | 1330 | 100 | Minus |
3R | 32079331 | 3R | 20553127..20553314 | 916..729 | 940 | 100 | Minus |
3R | 32079331 | 3R | 20554253..20554411 | 159..1 | 795 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 20293215..20293888 | 1589..916 | 3370 | 100 | Minus |
3R | 31820162 | 3R | 20294727..20295035 | 463..155 | 1530 | 99.6 | Minus |
3R | 31820162 | 3R | 20294401..20294666 | 729..464 | 1330 | 100 | Minus |
3R | 31820162 | 3R | 20293958..20294145 | 916..729 | 940 | 100 | Minus |
3R | 31820162 | 3R | 20295084..20295242 | 159..1 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 10:29:36 has no hits.
AT07308.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:30:26 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 16376299..16376970 | 917..1588 | 100 | <- | Minus |
chr3R | 16377041..16377227 | 730..916 | 100 | <- | Minus |
chr3R | 16377484..16377749 | 464..729 | 100 | <- | Minus |
chr3R | 16377810..16378113 | 160..463 | 100 | <- | Minus |
chr3R | 16378167..16378325 | 1..159 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:49:21 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
att-ORFA-RC | 188..1098 | 153..1064 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:45:31 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
att-ORFA-RC | 188..1098 | 153..1064 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:33 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
att-ORFA-RA | 188..1098 | 153..1064 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:36 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
att-ORFA-RA | 188..1098 | 153..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-13 09:25:05 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
att-ORFA-RA | 484..1914 | 153..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:45:31 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
att-ORFA-RA | 484..1914 | 153..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:33 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
att-ORFA-RC | 470..1898 | 153..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:36 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
att-ORFA-RC | 470..1898 | 153..1582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:26 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20552385..20553056 | 917..1588 | 100 | <- | Minus |
3R | 20553127..20553313 | 730..916 | 100 | <- | Minus |
3R | 20553570..20553835 | 464..729 | 100 | <- | Minus |
3R | 20553896..20554199 | 160..463 | 100 | <- | Minus |
3R | 20554253..20554411 | 1..159 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:26 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20552385..20553056 | 917..1588 | 100 | <- | Minus |
3R | 20553127..20553313 | 730..916 | 100 | <- | Minus |
3R | 20553570..20553835 | 464..729 | 100 | <- | Minus |
3R | 20553896..20554199 | 160..463 | 100 | <- | Minus |
3R | 20554253..20554411 | 1..159 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:26 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20552385..20553056 | 917..1588 | 100 | <- | Minus |
3R | 20553127..20553313 | 730..916 | 100 | <- | Minus |
3R | 20553570..20553835 | 464..729 | 100 | <- | Minus |
3R | 20553896..20554199 | 160..463 | 100 | <- | Minus |
3R | 20554253..20554411 | 1..159 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:33 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16378107..16378778 | 917..1588 | 100 | <- | Minus |
arm_3R | 16378849..16379035 | 730..916 | 100 | <- | Minus |
arm_3R | 16379292..16379557 | 464..729 | 100 | <- | Minus |
arm_3R | 16379618..16379921 | 160..463 | 100 | <- | Minus |
arm_3R | 16379975..16380133 | 1..159 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:20:49 Download gff for
AT07308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20293216..20293887 | 917..1588 | 100 | <- | Minus |
3R | 20293958..20294144 | 730..916 | 100 | <- | Minus |
3R | 20294401..20294666 | 464..729 | 100 | <- | Minus |
3R | 20294727..20295030 | 160..463 | 100 | <- | Minus |
3R | 20295084..20295242 | 1..159 | 100 | | Minus |
AT07308.pep Sequence
Translation from 121 to 714
> AT07308.pep
MSLRLFIHSRAFGAPENRPGGDQPDIRSSGGGAGQDGHRPAGPHKDQLPD
PQRCALLVSSLAALPAKHLCQRGRFGPVAGELGHDGQNRALRSHTVHGPR
AVASHPARRQGRHQHERSSVFGWLPGGNHLTVADVSSGPGTRPHGRHGSV
YWLSDAATSLHQDLGGGGSADAVPRLLGDRSRRDSLCGHLLLHLRDS*
AT07308.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
att-ORFB-PA | 197 | CG33488-PA | 1..197 | 1..197 | 1068 | 100 | Plus |
AT07308.hyp Sequence
Translation from 374 to 1063
> AT07308.hyp
MARIVPYAAIQFTAHEQWRRILHVDKDGTNTKGRRFLAGSLAGITSQSLT
YPLDLARARMAVTDRYTGYRTLRQVFTKIWVEEGPRTLFRGYWATVLGVI
PYAGTSFFTYETLKREYYEVVGNNKPNTLVSLAFGAAAGAAGQTASYPLD
IVRRRMQTMRVNTAGGDRYPTILETLVKIYREEGVKNGFYKGLSMNWIKG
PIAVGISFSTYDLIKAWLTELANLRRVEK*
AT07308.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
att-ORFA-PE | 290 | CG4241-PE | 62..290 | 1..229 | 1189 | 100 | Plus |
att-ORFA-PB | 290 | CG4241-PB | 62..290 | 1..229 | 1189 | 100 | Plus |
att-ORFA-PF | 365 | CG4241-PF | 137..365 | 1..229 | 1189 | 100 | Plus |
att-ORFA-PC | 365 | CG4241-PC | 137..365 | 1..229 | 1189 | 100 | Plus |
att-ORFA-PA | 365 | CG4241-PA | 137..365 | 1..229 | 1189 | 100 | Plus |
att-ORFA-PE | 290 | CG4241-PE | 2..175 | 37..215 | 156 | 27.6 | Plus |
att-ORFA-PB | 290 | CG4241-PB | 2..175 | 37..215 | 156 | 27.6 | Plus |
att-ORFA-PF | 365 | CG4241-PF | 77..250 | 37..215 | 156 | 27.6 | Plus |
att-ORFA-PC | 365 | CG4241-PC | 77..250 | 37..215 | 156 | 27.6 | Plus |