Clone AT07308 Report

Search the DGRC for AT07308

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:73
Well:8
Vector:pOTB7
Associated Gene/Transcriptatt-ORFB-RA
Protein status:AT07308.pep: gold
Sequenced Size:1607

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
att-ORFB 2009-02-06 Manual selection by Sue Celniker

Clone Sequence Records

AT07308.complete Sequence

1607 bp assembled on 2009-04-13

GenBank Submission: BT082015.1

> AT07308.complete
AAATTACATTGGCGACACAATGAAAACTCTTGAATTTTTGTGTTTGTCGA
CAGTAAAATGTCGAGTATTTGACTTCAAACCGAACTAAATTATAGAGCGT
AGTGGAGTGTCAAAGTTTCCTATGTCCCTCCGTTTATTTATCCATAGTCG
CGCATTCGGTGCGCCAGAAAATCGACCAGGTGGTGATCAGCCTGATATCC
GGAGCAGCGGCGGGGGCGCTGGCCAAGACGGTCATCGCCCCGCTGGACCG
CACAAAGATCAACTTCCAGATCCGCAACGATGTGCCCTTCTCGTTTCGAG
CCTCGCTGCGCTACCTGCAAAACACCTATGCCAACGAGGGCGTTTTGGCC
CTGTGGCGGGGGAACTCGGCCACGATGGCCAGAATCGTGCCCTACGCAGC
CATACAGTTCACGGCCCACGAGCAGTGGCGTCGCATCCTGCACGTCGACA
AGGACGGCACCAACACGAAAGGTCGTCGGTTTTTGGCTGGCTCCCTGGCG
GGAATCACCTCACAGTCGCTGACGTATCCTCTGGACCTGGCACGCGCCCG
CATGGCCGTCACGGATCGGTATACTGGCTATCGGACGCTGCGACAAGTCT
TCACCAAGATCTGGGTGGAGGAGGGTCCGCGGACGCTGTTCCGCGGCTAC
TGGGCGACCGTTCTCGGCGTGATTCCCTATGCGGGCACCTCCTTCTTCAC
CTACGAGACTCTTAAGCGGGAATACTATGAAGTGGTCGGCAACAATAAAC
CCAATACTCTAGTCTCGCTGGCCTTCGGTGCTGCGGCTGGTGCCGCCGGG
CAAACGGCCAGCTATCCATTGGACATTGTGCGGCGAAGAATGCAGACAAT
GCGGGTGAACACGGCTGGCGGAGATCGGTACCCAACCATCCTGGAGACTC
TCGTCAAGATCTATCGTGAGGAGGGCGTCAAGAACGGTTTCTACAAGGGA
CTTAGCATGAACTGGATCAAGGGACCCATCGCCGTGGGCATCAGCTTCTC
CACCTACGATCTGATCAAGGCGTGGCTCACGGAGCTGGCCAACTTGAGAC
GGGTTGAGAAATAGCCCAGCTCCCTGCCCCTGCCACTCGTCACCCATAAA
CACCACACCAAAAACGCACTGCTTTGATCTTAAGTCTCGCGATCGATGGA
TGAGCTGAGGAAATAGAAGTGAAGCACCGACATGCTCTAATTGTTAGATA
TTTTTTAGCTGTTAGTTGTGAGGGAGAGAAGCGATGAAGTGAAGACACCC
GAAAGCGCTTAACTTTGTTATTAACCGTAATTGATTTATTATCGCCGTAA
GCCGAAAGTATATCAGCCAATAAACTGTCTGAATAATGACTCGCCTGGCA
CATACTGCTCCCCAGGACCTCGTATTCAATGGTGTTGCTTTGACAATAAC
ACTCCTAGATTAATGATTACGATTTACCCGAACATTTTGTATATTGTGTA
TTGCCAACTCAATGTCAAGGCGCTGCGACTGTTAAAATAGTCATGAATTT
GAGGGTGTTCACACCAGCATATACTATGTAATTCTTGTATGTTAGTGTGT
TTTTATTATTAAAATTTACAAAATTGTTTAACTGATCGAAAAAAAAAAAA
AAAAAAA

AT07308.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
att-ORFB-RA 1609 att-ORFB-RA 34..1609 1..1576 7880 100 Plus
att-ORFB.a 1489 att-ORFB.a 1..1489 3..1491 7445 100 Plus
att-ORFA-RA 2086 att-ORFA-RA 634..2063 160..1589 7150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16376299..16376971 1588..916 3365 100 Minus
chr3R 27901430 chr3R 16377810..16378118 463..155 1530 99.7 Minus
chr3R 27901430 chr3R 16377484..16377749 729..464 1330 100 Minus
chr3R 27901430 chr3R 16377041..16377228 916..729 940 100 Minus
chr3R 27901430 chr3R 16378167..16378325 159..1 795 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:41:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20552384..20553057 1589..916 3370 100 Minus
3R 32079331 3R 20553896..20554204 463..155 1530 99.7 Minus
3R 32079331 3R 20553570..20553835 729..464 1330 100 Minus
3R 32079331 3R 20553127..20553314 916..729 940 100 Minus
3R 32079331 3R 20554253..20554411 159..1 795 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20293215..20293888 1589..916 3370 100 Minus
3R 31820162 3R 20294727..20295035 463..155 1530 99.6 Minus
3R 31820162 3R 20294401..20294666 729..464 1330 100 Minus
3R 31820162 3R 20293958..20294145 916..729 940 100 Minus
3R 31820162 3R 20295084..20295242 159..1 795 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:29:36 has no hits.

AT07308.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:30:26 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16376299..16376970 917..1588 100 <- Minus
chr3R 16377041..16377227 730..916 100 <- Minus
chr3R 16377484..16377749 464..729 100 <- Minus
chr3R 16377810..16378113 160..463 100 <- Minus
chr3R 16378167..16378325 1..159 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:49:21 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
att-ORFA-RC 188..1098 153..1064 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:45:31 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
att-ORFA-RC 188..1098 153..1064 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:33 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
att-ORFA-RA 188..1098 153..1064 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:36 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
att-ORFA-RA 188..1098 153..1064 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-13 09:25:05 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
att-ORFA-RA 484..1914 153..1584 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:45:31 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
att-ORFA-RA 484..1914 153..1584 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:33 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
att-ORFA-RC 470..1898 153..1582 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:36 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
att-ORFA-RC 470..1898 153..1582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:26 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20552385..20553056 917..1588 100 <- Minus
3R 20553127..20553313 730..916 100 <- Minus
3R 20553570..20553835 464..729 100 <- Minus
3R 20553896..20554199 160..463 100 <- Minus
3R 20554253..20554411 1..159 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:26 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20552385..20553056 917..1588 100 <- Minus
3R 20553127..20553313 730..916 100 <- Minus
3R 20553570..20553835 464..729 100 <- Minus
3R 20553896..20554199 160..463 100 <- Minus
3R 20554253..20554411 1..159 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:30:26 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20552385..20553056 917..1588 100 <- Minus
3R 20553127..20553313 730..916 100 <- Minus
3R 20553570..20553835 464..729 100 <- Minus
3R 20553896..20554199 160..463 100 <- Minus
3R 20554253..20554411 1..159 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:33 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16378107..16378778 917..1588 100 <- Minus
arm_3R 16378849..16379035 730..916 100 <- Minus
arm_3R 16379292..16379557 464..729 100 <- Minus
arm_3R 16379618..16379921 160..463 100 <- Minus
arm_3R 16379975..16380133 1..159 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:20:49 Download gff for AT07308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20293216..20293887 917..1588 100 <- Minus
3R 20293958..20294144 730..916 100 <- Minus
3R 20294401..20294666 464..729 100 <- Minus
3R 20294727..20295030 160..463 100 <- Minus
3R 20295084..20295242 1..159 100   Minus

AT07308.pep Sequence

Translation from 121 to 714

> AT07308.pep
MSLRLFIHSRAFGAPENRPGGDQPDIRSSGGGAGQDGHRPAGPHKDQLPD
PQRCALLVSSLAALPAKHLCQRGRFGPVAGELGHDGQNRALRSHTVHGPR
AVASHPARRQGRHQHERSSVFGWLPGGNHLTVADVSSGPGTRPHGRHGSV
YWLSDAATSLHQDLGGGGSADAVPRLLGDRSRRDSLCGHLLLHLRDS*

AT07308.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
att-ORFB-PA 197 CG33488-PA 1..197 1..197 1068 100 Plus

AT07308.hyp Sequence

Translation from 374 to 1063

> AT07308.hyp
MARIVPYAAIQFTAHEQWRRILHVDKDGTNTKGRRFLAGSLAGITSQSLT
YPLDLARARMAVTDRYTGYRTLRQVFTKIWVEEGPRTLFRGYWATVLGVI
PYAGTSFFTYETLKREYYEVVGNNKPNTLVSLAFGAAAGAAGQTASYPLD
IVRRRMQTMRVNTAGGDRYPTILETLVKIYREEGVKNGFYKGLSMNWIKG
PIAVGISFSTYDLIKAWLTELANLRRVEK*

AT07308.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
att-ORFA-PE 290 CG4241-PE 62..290 1..229 1189 100 Plus
att-ORFA-PB 290 CG4241-PB 62..290 1..229 1189 100 Plus
att-ORFA-PF 365 CG4241-PF 137..365 1..229 1189 100 Plus
att-ORFA-PC 365 CG4241-PC 137..365 1..229 1189 100 Plus
att-ORFA-PA 365 CG4241-PA 137..365 1..229 1189 100 Plus
att-ORFA-PE 290 CG4241-PE 2..175 37..215 156 27.6 Plus
att-ORFA-PB 290 CG4241-PB 2..175 37..215 156 27.6 Plus
att-ORFA-PF 365 CG4241-PF 77..250 37..215 156 27.6 Plus
att-ORFA-PC 365 CG4241-PC 77..250 37..215 156 27.6 Plus