Clone AT07410 Report

Search the DGRC for AT07410

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:74
Well:10
Vector:pOTB7
Associated Gene/TranscriptCG17375-RB
Protein status:AT07410.pep: gold
Preliminary Size:880
Sequenced Size:999

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17375 2002-01-01 Sim4 clustering to Release 2
CG17375 2002-04-26 Blastp of sequenced clone
CG17375 2008-04-29 Release 5.5 accounting
CG17375 2008-08-15 Release 5.9 accounting
CG17375 2008-12-18 5.12 accounting

Clone Sequence Records

AT07410.complete Sequence

999 bp (999 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113215

> AT07410.complete
AAAGTATCTTGCAGTTTTAGCTTAAGTTTCCAGACTTTTAACTTCTACCT
TTTGAGCTCGTATATATAATTCAAAAATCTTCGGTGGTTTTAAAATTCTT
AGTGACTTAAATGCGATGGAAGATGTCCGCACTCTGCGGTATGATATCCA
ATGGGATGTTTTCGAGGGCATGCAAATAGTTGACATCAATTCAAAGTACT
ATGACATGGTGATCGAGTTCATGTGGTCCAATTCGTTTCTGAAAAGTCTT
GTCTATGAGAGTCTGGGACTATTCGATTTGCCGGACATGAAACAGACTTA
TTCTTGGTATGTGCGACACATCCTGCGAAACGAGTGCTCCGTGATGATGA
TTAGCGAAGATGAAACGCAAATAAGGGCAGTGGGATTGCTGGAATGGATG
ACCGAGGAATGGCACTCCTGGGTCTTCTTTCCCTCTTCGTTGCCCAGGAA
TCTGTTCCAGCAGATCATAATGATGAAGAAGGAGCTCATCGATGCGACCA
AAGCGAACATGGGCATCTCCACCTACGATGCACTGTTCGTCCACGAGATC
GCCTTTCCGGATGAGCTCTACTTTAACCGGGATTTCCTGTCGACCATCTT
CGATGTCTTTGGCTTTGTGGCCCAGCACATGCACATGCCGCGGGTCAGCT
TCATCGCCCTCAGCTCCGTGGACCAGGAGGCCGCCAGTCTGATCGATTAC
GAAGAGATCGGGCGGACTATCTACTCGATCTACAAGGTTGGCAACACCCG
GCCCTTTGACATCCTTCGCGAGCTAGACGAGATGTACGCACTGCTGTTTG
AACTGGCCGTCTCGCCGGTACTGAAGTACATTGAAATGCCCGGTTTCGAG
GAGTTCCACGAGGCCCTGGATGCCAGGTTGGCCAAGGAGGCAGCCGAAAA
GCGCCACGACGACGATATATGATATGTTTCCTGCTGTCTTCTTCACATAA
ATGTCTGCCTACTCTTGGGCTACCCCATCGTAAAAAAAAAAAAAAAAAA

AT07410.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17375-RB 1340 CG17375-RB 119..1101 1..983 4900 99.8 Plus
CG17375.a 1064 CG17375.a 1..987 1..983 4835 99.4 Plus
CG17375.b 1058 CG17375.b 71..858 196..983 3925 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6803667..6804228 981..420 2795 99.8 Minus
chr2L 23010047 chr2L 6804645..6804840 196..1 980 100 Minus
chr2L 23010047 chr2L 6804293..6804408 421..306 580 100 Minus
chr2L 23010047 chr2L 6804477..6804590 309..196 570 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:42:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6804617..6805180 983..420 2805 99.8 Minus
2L 23513712 2L 6805597..6805792 196..1 980 100 Minus
2L 23513712 2L 6805245..6805360 421..306 580 100 Minus
2L 23513712 2L 6805429..6805542 309..196 570 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6804617..6805180 983..420 2805 99.8 Minus
2L 23513712 2L 6805597..6805792 196..1 980 100 Minus
2L 23513712 2L 6805245..6805360 421..306 580 100 Minus
2L 23513712 2L 6805429..6805542 309..196 570 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:29:40 has no hits.

AT07410.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:30:30 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6803667..6804227 421..981 99 <- Minus
chr2L 6804294..6804407 307..420 100 <- Minus
chr2L 6804480..6804590 196..306 100 <- Minus
chr2L 6804646..6804840 1..195 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:54:48 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG17375-RA 1..729 195..922 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:57:02 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG17375-RB 1..807 116..922 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:11:18 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG17375-RB 1..807 116..922 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:50:23 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG17375-RA 1..729 195..922 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:45 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG17375-RB 1..807 116..922 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:36:46 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG17375-RA 1..985 1..981 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:57:02 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG17375-RB 1..981 1..981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:18 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG17375-RB 1..981 1..981 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:50:23 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG17375-RA 1..985 1..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:45 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG17375-RB 1..981 1..981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:30 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6804619..6805179 421..981 99 <- Minus
2L 6805246..6805359 307..420 100 <- Minus
2L 6805432..6805542 196..306 100 <- Minus
2L 6805598..6805792 1..195 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:30 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6804619..6805179 421..981 99 <- Minus
2L 6805246..6805359 307..420 100 <- Minus
2L 6805432..6805542 196..306 100 <- Minus
2L 6805598..6805792 1..195 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:30 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6804619..6805179 421..981 99 <- Minus
2L 6805246..6805359 307..420 100 <- Minus
2L 6805432..6805542 196..306 100 <- Minus
2L 6805598..6805792 1..195 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:18 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6805432..6805542 196..306 100 <- Minus
arm_2L 6805246..6805359 307..420 100 <- Minus
arm_2L 6805598..6805792 1..195 100   Minus
arm_2L 6804619..6805179 421..981 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:22:17 Download gff for AT07410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6804619..6805179 421..981 99 <- Minus
2L 6805246..6805359 307..420 100 <- Minus
2L 6805432..6805542 196..306 100 <- Minus
2L 6805598..6805792 1..195 100   Minus

AT07410.pep Sequence

Translation from 115 to 921

> AT07410.pep
MEDVRTLRYDIQWDVFEGMQIVDINSKYYDMVIEFMWSNSFLKSLVYESL
GLFDLPDMKQTYSWYVRHILRNECSVMMISEDETQIRAVGLLEWMTEEWH
SWVFFPSSLPRNLFQQIIMMKKELIDATKANMGISTYDALFVHEIAFPDE
LYFNRDFLSTIFDVFGFVAQHMHMPRVSFIALSSVDQEAASLIDYEEIGR
TIYSIYKVGNTRPFDILRELDEMYALLFELAVSPVLKYIEMPGFEEFHEA
LDARLAKEAAEKRHDDDI*

AT07410.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14476-PA 238 GF14476-PA 1..237 31..267 1093 85.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23577-PA 383 GG23577-PA 138..383 24..268 1239 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13170-PA 235 GH13170-PA 1..228 36..266 698 56 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17375-PB 268 CG17375-PB 1..268 1..268 1400 100 Plus
CG17375-PD 242 CG17375-PD 2..242 28..268 1258 100 Plus
CG17375-PC 242 CG17375-PC 2..242 28..268 1258 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17749-PA 269 GI17749-PA 1..254 1..254 824 60.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25609-PA 268 GL25609-PA 1..248 1..248 1009 71 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14487-PA 256 GA14487-PA 1..236 1..248 950 68.1 Plus
Dpse\GA28047-PA 261 GA28047-PA 1..241 1..248 926 66.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13793-PA 238 GM13793-PA 1..238 31..268 1246 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17575-PA 270 GJ17575-PA 1..254 1..253 848 62.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24787-PA 270 GK24787-PA 4..262 5..265 995 70.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18399-PA 268 GE18399-PA 1..268 1..268 1373 95.1 Plus

AT07410.hyp Sequence

Translation from 115 to 921

> AT07410.hyp
MEDVRTLRYDIQWDVFEGMQIVDINSKYYDMVIEFMWSNSFLKSLVYESL
GLFDLPDMKQTYSWYVRHILRNECSVMMISEDETQIRAVGLLEWMTEEWH
SWVFFPSSLPRNLFQQIIMMKKELIDATKANMGISTYDALFVHEIAFPDE
LYFNRDFLSTIFDVFGFVAQHMHMPRVSFIALSSVDQEAASLIDYEEIGR
TIYSIYKVGNTRPFDILRELDEMYALLFELAVSPVLKYIEMPGFEEFHEA
LDARLAKEAAEKRHDDDI*

AT07410.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17375-PB 268 CG17375-PB 1..268 1..268 1400 100 Plus
CG17375-PD 242 CG17375-PD 2..242 28..268 1258 100 Plus
CG17375-PC 242 CG17375-PC 2..242 28..268 1258 100 Plus