Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT07420.complete Sequence
1395 bp (1395 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113216
> AT07420.complete
CCTCGTGCCGAATCGGCACGAGGTTCATGTGAAGGGTATTTGTTTCGATT
TACCTGAGGAAGAATTTTCAAAATTTCAGAATGTTCCGGATGAGTGTCTC
GCCTTTACCATGGACAATGCGACCAAGCAAGTTCCCATCCGCTAATCCCT
ACTTTATTTTCTTTGACCACTTTCGGATTAATCTTCAAAAGCGGGACATT
TGCCATCTGAAACCGATTTCCTTGGCCAAAATAGCCGGCAGAAAATGGCG
AGAAATGACAACCGCCCAAAAATCAGTTTTTGTGCAGATAGCCGAAATAA
ATCGAGCCAGGCTTAGGGCCCGTGGTCGCCCCAGTGTTCCAGTTGTGGGA
CTTGGAAAGTTTTTCAACGTTTAACTTAAAATGACACAGAAGCATTAGCA
ATTCCCGCCACTAGTTCAAATTTTCACGAGCCACTACCAACACTTCTATA
TCATCGCACAGCTGCTAATTCGACGTTCACCACACTGGCAATAGTTGTGG
TCTGTAAAAAAGAGCAATTTTACGAAAGTACAGCATGAGTTCGGGCTTTG
TGACTGAAGCTGAGGCGACCGAGCAAAGGCAGAGACGTCAGGAGGAATGG
GAGCGTGTACGCCAGCCGGAGGATCCACTAGAACGACCTGAGGAACCCTA
CGATGGGCGCTCACTTTATGAACGCCTCAAACAAAATAAGGACAAGAAGG
ACATGGAGTTCGAGGAAGCCCACAAGCTGAAAAACCTCATCCGTGGTCTG
GACGATGATGAGGTGCAGTTTCTGGAATTGGTCGATGCCCATAAAATACA
CGCGGAGCGCCAGCAAATGCGCGACGAGGAGCTAGAACTAAAGGATTTTC
GCAATCGTGTGGAAAAGCTGCAGGAGGAGAGTGTAGACAAGAAACTGCAA
GCTGAACTAAAAACCACAGCGAAGTCCGCGGGAGCTTCGGTCGGGCGTAG
CACTCAGAAGACGCTGCTCGGCCAGGGCATCAAGAGAAAAAACGGCGAAC
TGCCCACCACCAGTAAAGTAGCCAAAATCACTGAGAATGAGGTCGAACAG
ACAGCGACAAATGAAGCAACCAAGGACCCTGCTGATAAGACAACGAACAC
CACATTAATTACAAACAAATACAACCAGGGGGCCCTAAAGTGCATCGCTA
TACTTCCGGGCATCGGCTCCTACACGGAGTCTAGTGACTCGGAGGCCAGC
ACCGATGAGGAGGAACCCAGTATGTGCAGCCGAACCGACTTATGTGGCCG
CAAAATTCCCAAGAAGAAGCAGTGCTCAGAGTAGGATCAACTTTTTATTT
GGATTCTTAAAGTGTAGTTTTTCCTTGCAAGAAAATATAGCCTAGAGTGT
AAACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AT07420.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-RA | 1765 | CG14480-RA | 5..1339 | 24..1358 | 6675 | 100 | Plus |
CG14480.a | 1770 | CG14480.a | 5..1344 | 24..1358 | 6600 | 99.6 | Plus |
ns2-RA | 2579 | ns2-RA | 2162..2579 | 1358..941 | 2090 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 13452445..13452911 | 890..1356 | 2305 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 13451778..13452162 | 346..730 | 1895 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 13451403..13451724 | 24..345 | 1565 | 99.1 | Plus |
chr2R | 21145070 | chr2R | 13452223..13452383 | 731..891 | 805 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:42:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17565386..17565854 | 890..1358 | 2345 | 100 | Plus |
2R | 25286936 | 2R | 17564718..17565103 | 345..730 | 1930 | 100 | Plus |
2R | 25286936 | 2R | 17564344..17564665 | 24..345 | 1610 | 100 | Plus |
2R | 25286936 | 2R | 17565164..17565324 | 731..891 | 805 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 17566585..17567053 | 890..1358 | 2345 | 100 | Plus |
2R | 25260384 | 2R | 17565917..17566302 | 345..730 | 1930 | 100 | Plus |
2R | 25260384 | 2R | 17565543..17565864 | 24..345 | 1610 | 100 | Plus |
2R | 25260384 | 2R | 17566363..17566523 | 731..891 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-15 15:14:58 has no hits.
AT07420.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:15:48 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 13452223..13452383 | 731..891 | 100 | -> | Plus |
chr2R | 13451399..13451724 | 20..345 | 98 | -> | Plus |
chr2R | 13451778..13452162 | 346..730 | 99 | -> | Plus |
chr2R | 13452447..13452911 | 892..1356 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:54:49 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..750 | 535..1284 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:57:04 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RB | 1..750 | 535..1284 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:09:05 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..750 | 535..1284 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:50:24 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..750 | 535..1284 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:32:56 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..750 | 535..1284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:36:48 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..1337 | 20..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:57:04 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..1337 | 20..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:05 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..1337 | 20..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:50:25 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..1337 | 20..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:32:56 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14480-RA | 1..1337 | 20..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:48 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17565164..17565324 | 731..891 | 100 | -> | Plus |
2R | 17564340..17564665 | 20..345 | 99 | -> | Plus |
2R | 17564719..17565103 | 346..730 | 100 | -> | Plus |
2R | 17565388..17565852 | 892..1356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:48 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17565164..17565324 | 731..891 | 100 | -> | Plus |
2R | 17564340..17564665 | 20..345 | 99 | -> | Plus |
2R | 17564719..17565103 | 346..730 | 100 | -> | Plus |
2R | 17565388..17565852 | 892..1356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:48 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17565164..17565324 | 731..891 | 100 | -> | Plus |
2R | 17564340..17564665 | 20..345 | 99 | -> | Plus |
2R | 17564719..17565103 | 346..730 | 100 | -> | Plus |
2R | 17565388..17565852 | 892..1356 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:05 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13452669..13452829 | 731..891 | 100 | -> | Plus |
arm_2R | 13451845..13452170 | 20..345 | 99 | -> | Plus |
arm_2R | 13452224..13452608 | 346..730 | 100 | -> | Plus |
arm_2R | 13452893..13453357 | 892..1356 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:22:18 Download gff for
AT07420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17565539..17565864 | 20..345 | 99 | -> | Plus |
2R | 17565918..17566302 | 346..730 | 100 | -> | Plus |
2R | 17566363..17566523 | 731..891 | 100 | -> | Plus |
2R | 17566587..17567051 | 892..1356 | 100 | | Plus |
AT07420.pep2 Sequence
Translation from 80 to 373
> AT07420.pep2
MFRMSVSPLPWTMRPSKFPSANPYFIFFDHFRINLQKRDICHLKPISLAK
IAGRKWREMTTAQKSVFVQIAEINRARLRARGRPSVPVVGLGKFFNV*
Sequence AT07420.pep2 has no blast hits.
AT07420.pep Sequence
Translation from 534 to 1283
> AT07420.pep
MSSGFVTEAEATEQRQRRQEEWERVRQPEDPLERPEEPYDGRSLYERLKQ
NKDKKDMEFEEAHKLKNLIRGLDDDEVQFLELVDAHKIHAERQQMRDEEL
ELKDFRNRVEKLQEESVDKKLQAELKTTAKSAGASVGRSTQKTLLGQGIK
RKNGELPTTSKVAKITENEVEQTATNEATKDPADKTTNTTLITNKYNQGA
LKCIAILPGIGSYTESSDSEASTDEEEPSMCSRTDLCGRKIPKKKQCSE*
AT07420.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF11643-PA | 237 | GF11643-PA | 1..237 | 1..249 | 1034 | 82 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG21799-PA | 243 | GG21799-PA | 1..243 | 1..249 | 1162 | 91.6 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH20924-PA | 241 | GH20924-PA | 1..241 | 1..249 | 860 | 74.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-PB | 249 | CG14480-PB | 1..249 | 1..249 | 1273 | 100 | Plus |
CG14480-PA | 249 | CG14480-PA | 1..249 | 1..249 | 1273 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI18362-PA | 243 | GI18362-PA | 1..243 | 1..249 | 890 | 72.8 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL11467-PA | 237 | GL11467-PA | 1..237 | 1..249 | 914 | 73.5 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA13016-PA | 235 | GA13016-PA | 1..235 | 1..249 | 924 | 75.1 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM21802-PA | 249 | GM21802-PA | 1..249 | 1..249 | 1287 | 98 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD11291-PA | 249 | GD11291-PA | 1..249 | 1..249 | 1298 | 98.8 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ21431-PA | 243 | GJ21431-PA | 1..243 | 1..249 | 936 | 76.1 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK21902-PA | 243 | GK21902-PA | 1..241 | 1..247 | 958 | 76.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11874-PA | 249 | GE11874-PA | 1..249 | 1..249 | 1202 | 94.4 | Plus |
AT07420.hyp Sequence
Translation from 534 to 1283
> AT07420.hyp
MSSGFVTEAEATEQRQRRQEEWERVRQPEDPLERPEEPYDGRSLYERLKQ
NKDKKDMEFEEAHKLKNLIRGLDDDEVQFLELVDAHKIHAERQQMRDEEL
ELKDFRNRVEKLQEESVDKKLQAELKTTAKSAGASVGRSTQKTLLGQGIK
RKNGELPTTSKVAKITENEVEQTATNEATKDPADKTTNTTLITNKYNQGA
LKCIAILPGIGSYTESSDSEASTDEEEPSMCSRTDLCGRKIPKKKQCSE*
AT07420.hyp Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2023-01-03 19:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14480-PB | 249 | CG14480-PB | 1..249 | 1..249 | 1273 | 100 | Plus |
CG14480-PA | 249 | CG14480-PA | 1..249 | 1..249 | 1273 | 100 | Plus |